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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054432 ID=TCONS_00054432|Name=TCONS_00054432|organism=Clytia hemisphaerica|type=transcript|length=3040bpRun BLAST on NCBI transcript from alignment at scaffold_242:1709374..1726253- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054432 ID=TCONS_00054432|Name=TCONS_00054432|organism=Clytia hemisphaerica|type=transcript|length=16880bp|location=Sequence derived from alignment at scaffold_242:1709374..1726253- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00054432 vs. Swiss-Prot (Human)
Match: PKHG5 (Pleckstrin homology domain-containing family G member 5 OS=Homo sapiens GN=PLEKHG5 PE=1 SV=3) HSP 1 Score: 256.914 bits (655), Expect = 3.514e-71 Identity = 130/357 (36.41%), Postives = 213/357 (59.66%), Query Frame = 3
Query: 663 NRDFYLESSWKDVVDGNEEMERHDRVQQEAIWELITTEKTYIADLRVVTEVFKKCFSRLKDDGFLTDVDPFLIFANIDEIHDLNVEFW-KLLITVVENSRKSRQPIKPSDLINAFDRFEVLFQPYITFCNHDTSNINLPNYTDAVNEQVKEYFMWCDDHPRCKRIKLQGFLIKPLQRVTKYSLLIRAVEGKTQNEDEKEMLGKMRNRVETFVSKINSAVHMRQEHEKMLAVLARLETYAPVEAVNEEAEKIMNEYSSLDLKGNIPDFPLERKRLIVKEGPMRLVE-KQVKKEVQGYLFSDVFVLARPKKNTDKYKVIRQPFRLDKTVIRVLKDAGSFLVIYLNEYNVMSNAFVLQIN 1727
N LE SW++++DG+E++ R QQEA+WEL+ TE +YI LRV+ +F C L++ G L +V+ +F+NI EI L+ W ++ V+E +R++R ++P D + F F LF+PYI +C + + N+ + Y W + HP+C+R+KL L KP QR+TKY LL+++V KT+ KE + M VE F+ +N+ + RQE +++ AV++R++ Y VE+ ++E +K++ E+ LDL IP E R ++ EG +R+ E K K +V +LF+D+ ++ + K ++ +VIR P +DK V R L+D GSFL+IYLNE++ A+ Q +
Sbjct: 367 NACLRLEDSWRELIDGHEKLTRRQCHQQEAVWELLHTEASYIRKLRVIINLFLCCLLNLQESGLLCEVEAERLFSNIPEIAQLHRRLWASVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLLRDNDLFRAYITWAEKHPQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTEEPRAKEAVVAMIGSVERFIHHVNACMRQRQERQRLAAVVSRIDAYEVVESSSDEVDKLLKEFLHLDLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTRVIRPPLLVDKIVCRELRDPGSFLLIYLNEFHSAVGAYTFQAS 723 The following BLAST results are available for this feature:
BLAST of TCONS_00054432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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