TCONS_00054629 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054629
Unique NameTCONS_00054629
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2032

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054629 ID=TCONS_00054629|Name=TCONS_00054629|organism=Clytia hemisphaerica|type=transcript|length=2032bp
TGGATGGATTAGAAACAATCAAAGACCTGTCAatTTATTATCCAGAGCAC
GGAATTGTTCACAGAGGTATGGCGTAAGATTTAAATTGTTATTCTCCTTG
CTACATAcaataacaaaacaaaatgAGAGAGTGCGTATCAATCCATATTG
GACAAGCCGGTTGTCAAATCGGTAACGCATGTTGGGAACTATACTGTCTG
GAGCACGGTATTCTTCCCGATGGTACTCCTAACCCTAACCATGAAAAGGA
ACAAGGAGACTCTGCTGTTTCTTTTTACTCCGAAATGGAAGAAACCGGCC
GCCAAGTTCCGCGAGCTGTTTATGCTGATTTAGAACCCACTGTTTTAGac
GAAGTGCGAACCGGTGCTTACCGTGAGCTTTTTCATCCGGATCAACTAAT
TAATGGAAAAGAAgatgcagcaaacaactttgcACGTGGTCACTACACGA
TTGGTCGAACCCTTATTGACGAGATTATCGACAAAGTTCGAAAACTTACG
GACAACTGTTGTGGTCTTCAAGGTTTCTTGATCTTCCATTCTTTCGGCGG
TGGTACCGGATCTGGATTGACCGCACGTCTTATGGAACGTCTCTCTGTCG
ACTACGGCAAAAAATCTAAACTCCAATTTTCCGTATACCCAGCTCCACAA
GTCTCGACAGCTGTTGTTGAACCTTACAACTCAGTTCTCACCACACATTT
TACTTTCGATCATTCCGATTGTGCTTTCATGGTTGATAATGAAGCTATCT
ATGATATCTgtcgaaaaaatttgaatattgaaCGACCTAACTATACCAAT
CTGAATCGATTAATCTCTCAAGTTGTCTCATCTATCACAGCTTCTCTACG
GTTCGAAGGTGAATTGAATGTTGACTTGAACGAATTCCAAACTAACTTGG
TGCCGTATCCCCGTATCCATTTCCCATTGTCAAGTTTTGCTCCAATCTTG
GCCCCTGATAAAGCACAAAAATCGTCGTTACACGTCGCTGAGATCactca
aaatgtttttaaacaaGAAAATCAAATGGTAAAATGTGATCCCAAACAAG
GAAAATACATGTCATGTTGTTTACTTTACCGTGGAGATGTTGGCCCTCAG
GATGTCAACAAGGCTATTGCAGGAGTCAAAGCCAAATCAGATATTCAATT
TGTTGATTGGTGTCCAACTGGATTTAAAGTCGGTATTAACAACCAGACGT
TACACGCACAAGAAGGTAGCGACATGGCACCTGTTAAACGTGCTCTCTGT
ATGTTGAGCAACACCACTGCAATGGCTGCATTGTGGGCACGTTTGGATca
taaatttgatttgatgTACCGAAAGAGAGCTTTTGTTCATTGGTATGTCG
GTGAAGGTATGGAAGAAGGTGAATTCAATGAAGCTCGTGAAGATTTGGCT
GGCCTTGAGCGTGATTATGAAGAAGTGGGCGGTGATTCGCCAAACTCTGA
TGAAGGAGAGATGGACGATGAATATTAAACCCCCTGACCGCCCTatttag
aaacattttttttccacgatcaatcaataaatcactTTGAACCATAACCT
TTTGACGTTGCATTTCTTTTATGGTATAAGTGAAGTTTTTTGATGTGAca
cctttttttagaaaaaattctgtATAAGTTAGAACCCACCTTCCCTTTCA
ACACAATAATTTTTCATCTCGAATATACTTGACCACCGAGCCACATCAGT
CCTAATGAACCACAGGGCTATTCCGCACTTTAATCCaagtataaaattta
taaacagaattttataagaaaaatttttgatacAACTATTTATTATAGCC
ATATACATGGATATTTTATTGTCGTGTATAATTATTATTGTCTTTTCCTC
TCACTTTTAAAGTATTTGTCTGTAAGAAAAACCATTTTAaataactttaa
atttttttttaaattatgtttgTCATTATAGGAAAAACCTTTGGAATTTT
TACAACTGTTCTTATCGGTTTTGTATGTAAATAGTAAACGTAGTTATGGA
CAagacaaattaaaaacaaatttcgaaaaata
Run BLAST on NCBI

transcript from alignment at scaffold_243:370935..379325-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054629 ID=TCONS_00054629|Name=TCONS_00054629|organism=Clytia hemisphaerica|type=transcript|length=8391bp|location=Sequence derived from alignment at scaffold_243:370935..379325- (Clytia hemisphaerica)
TGGATGGATTAGAAACAATCAAAGACCTGTCAGTGAGTATGTTAATCAAG
GTATTATTTTTCTAACTAATCTCATAANCAAATACGTGCTTTGTCCTTCC
AATGAATTCATGAATGCTGCTCGGAGAGAGTGCTCGAAACATCAAGTGTC
GAGTTTGGCGTAATCGCTTGTGTTTAGTGGGAAAACATGAGCTTGCTCCT
CAACAGAGTTTATAAGAATTTATAGAGTGATAAACATTGATAGATAGGCT
TGCTCTTATTGGTTTTCACGCATCTATGAATGAATAATTTGGATGGATTA
GAAACAATCAAAGACCTGTCAGTGAGTATGTTAATCAAGGTATTATTTTT
CTAACTAATCTCATAATCACTTTAACATTGACAATCTGAGGTTTTTAAAT
TCGACAAGTTTTTTTTTTTATTTGAACATCCAAAAAATTGAGGCCTTCGA
ATGTTCTTAACTTTTTTAGTTTTAAGCCGAGAAATGTTCTTGAAATATTC
TTAATTTCACCATATTGTGAATATTTTTATGCAATTTTCTAAGAAATTGG
GTGTTTTAGATAAATGTTCTTAGTTTGTTCTTAATATTTTTGCCATCGAA
GCCTTGTGTTTTTATATGGTTTGTTCTTACTAAAAAACGTTTACTATCCT
TATCTTCGTGTGTCTTTGTAACAGAATAAAATGTGAATTTTGTAACATAA
TAGGTCAATTTTCTTAGTAATATTTTCTCATTCCCATTTGATTTGAGCAC
GTGATATAATGATATAATGACTCTCTCGATTTGTGGGAGATAAGTAATTA
CTTAATCTTATTAATATTACATATTACGCATGTTACTTTGAAATATAATA
TTTTCTTTCAATTTAGATTTATTATCCAGAGCACGGAATTGTTCACAGAG
GTATGGCGTAAGGTAAGTTTCTGTATTCTCATTAAAAAAGTTAAGGGTCA
AAAAGGGGCATAAACTTGTTGGGGAAAAAAAGTCGTGAAATAAGCCACTC
GGAGAAACGTTAATTCTACTCAATAAATTTCGTCAATTCTCCTTAACAAT
ATTTTTGAAAAGTTGTCTGACTGTTGCAGCTTAAGTATTTTGTTTGATAC
ATGTTTTTTTATAAGAACAAACTATATAAGAACGTAAGGCTTCGTTGGCC
AAAATGTTAAGAATAAGTTGAGAACATTTCAAGGCTTTGCGGACTCTAAA
ACACCCAATCTCCTAGGAAAATGGACAAAGATATTCACAAAATGGCCAAA
ATAAGAACATGTTAAAAACATTTTTAGACTTAAAGCTCAAAAAGTCAAGA
ACATCCGAAGGCTTCAAAAATTTTGGATGTTCTTATAAAAGAAACGTGTA
ATGTTTAATAGTTATNCAAGAACATCCGAAGGCTCCAAAAATTTTGGATG
TTCTTATAAAAGAAACGTGTAATGTTTAATAGTTATACGAATCCGTGGGA
TGGGAGACAAAATGAAATCTTTTGGCGGGCATTTGAAAGTCGGGTGAATT
AAAAGGTTCTTTATGAACTTTATCATGTTTAAACGTTTCCAACATCTACA
CAGATCAGACTGTTTGAAAGTATGTAAAATTTCATGAAAAAGAAAATCAC
TGTTGTATTATGCTGAATATACGTTTTGTTTTCAAAATATGTTTTCAAAA
AATAAACTGAAAACTAAACTATTAAAAACTTATACTAAACTAAATAGAAT
TTTTTTTTTTGATTTGAATATTAGAAGTTTGATGGTTCGGATATTGAAAC
TACAATTTTATAACAATAAAGTATACTCTTTATAATTGATTTTTGAGACT
TAGCTGCACTTGGCGTAATCGAGTATTTCCTTGCTCCTGCTATGAATCGA
AATTTATGTTAAGCTTTCAGTATCTCTTGCTTTAATTCCATTTTTTCATA
CTCTTGCCTATCTCTACTTGATTTTTAGCCACTCCAGGTTAAAAAGTGTT
TTTGTGTTCTACCTTGAGGGAACTAATTATAGCGGGAACTAATTTTCACG
GTCGAAAAAAAAATCTGAAAAATTTCATTTTGCGGGAATTGATTTTCGCA
TTTTTGCCTTACTTTGGACACATTTCTTTCATTTTACTAGGGATTTTTCA
ATTTTTTTGATGAAAATTGGCCAAATTTGTAATTCGCGGTTTATGCCGAA
AAACTGCAAAAAAAGCGAAAATTTGTTCCCTTAAGGTACTTACGTTTCAC
GCTGTCATTCTTATGAAAATTTTTCTTATAAAAAAGTTCGATTAAGATTT
ATATCAATTCTTACACTTGCTAATCAAAAGTCTTTCTTTACTTGACAAAT
TATATGTTGAGATCTTTTTAAGATGAAGACCGGTTATTTTTCATTAGAGG
CATCCGATTTTGTGCAACTTGCCGACTGGTGTTATTAATTAATCAATTTG
TGGATCACTTATATTTTAATCAAATTATCCATTCTTAATTATTTATTCAT
TTTATTTGACTGTGTGTCATTTTTTGAAGACTTTGGCTCGCCATGTTTGC
AAACACCAATTCTTTTCGTCCTATCAATTTTTCATTTGTTTTGAATTGTT
TGATTGAGTGTAATCTTGAACTTTGATTGGCTCTCGAAACATTGAATGAC
TTTCTCAAAGTAGCAATAAAATTGAACTCTGGATGGATTTCATTGGTTAT
TTAGTGTGATTTTTCAGAGTACTTTGAGCATTTTTGATAGCGTCTTTCTA
AGCACACCGGTTTGAATCAGGTATTCTGGATTCAGATTGAAGAAATTTGA
TTCATACGAAAAAAAAAGGGAAGAAGATTTCTCTGTTGCTTTTTTATCTC
GAGCACACCGTCTCATTTTGCAGGGGAAATCAGAAATCTCAAGACGTTAC
TGTGACAAAAAGATTTTTTTGCAATTACTTGACCTTGTTTGATTATTTTT
TGAATTATTTTTCTCGACAGATTTAAATTGTTATTCTCCTTGCTACATAC
AATAACAAAACAAAATGGTAAGTAAATTTGTTATATTTATTTGTTGGTTG
AGCCTGCAGGTTCTTACAGGTTCATCTTTGTGTTTTTATACATACCAAAT
TTTGTTCGCATCGACCTATCTGGGGGTGGGGATGGGTGAAAATGGTCACC
TAATTATTTCAGTTTTAAGAGGAAAGGGATTTATCATTTTCTGGGACGAG
TACGATTGAACAACATTTAGAAATGTTTTTTTCTTGGTTTTAATACGTTT
TTATTTCTTGCAAATGAAATTACACCTTGTGGTTTTGAAAAGGGTTCTTT
CTGACCCGACGAAGTTTACTACCTCAGATTATTTCATTTGACCTGAGTGC
TCTTGAAATCGAGTTTATTACAAAACACTTTGAAATGAAAGTCCTATTGG
AATTGTTGTTCGAAATTTAAAGTATACAGCTTTTCTGTTCTAAATTTTCT
TTTAAACTCTCGGTTTCAGACTATTTATGAAAATAACAAAGGAACTTTTC
GTTAAAAGTGAATTGGGCAATGATTTCTGCAAAAAAATTGCGAGCTAAAA
AAAATTCTCCAAAAAAAGAAGATCTTGCAAAATCAGCGGCGACCCCTTGT
TGTGAACTTTGAAACAAGTAATTCACTGTCATGAATAAATTATGCTGGAT
TTCTTTTCAACCAATCATTCTCTAGTCTTTCTATCAGCAAGGCGTTCATT
CGTTGATATACTAAATTATGCATGTGGTTTACATATGAACCTCCTTATAT
CATCATTCCGTTTCTAGCTTGAACCGTCATAGCAATAATTTATTCATAAA
TGGGTCGTCCAGAATAATTAATCAATTTTTTTTTCTGCTCGCAATTTTTG
TTCAAGTCTAGAAAATCTCCGGGATAAACACAAAGGAAAATGATAACTTC
CTATTACTTCCAAATTTCATTCATTCATCTTTCCACGAATGGTTTTAGGC
AAATCGAAATAATATCACATTCCTAGCGTTTGCCGATGTTATGAACCGTC
TATAACAAACTTTTTGCCATCATGTTTTCTCCCTTTTTCTCTTAGAGAGA
GTGCGTATCAATCCATATTGGACAAGCCGGTTGTCAAATCGGTAACGCAT
GTTGGGAACTATACTGTCTGGAGCACGGTATTCTTCCCGATGGTACTCCT
AACCCTAACCATGAAAAGGAACAAGGAGACTCTGCTGTTTCTTTTTACTC
CGAAATGGAAGAAACCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTGTATA
TTTTTGTAAATTTTGAATATAATAAAATAAAACCAAGAAGAACACAAACA
TGAAATTTTGTATTTCACGAGTTTCTCAGTTTACAATTCCTAGCATTTGC
CGATGTTATGAACCGTCTATAACTAACTTTTTTGCCATCATGTTTTCTCC
CTTTTTCTCATTTAGAGAGAGTGCGTATCAATCCATATTGGACAAGCCGG
TTGTCAAATCGGTAACGCATGTTGGGAACTATACTGTCTGGAGCACGGTA
TTCTTCCCGATGGTACTCCTAACCCTAACCATGAAAAGGAACAAGGAGAC
TCTGCTGTTTCTTTTTACTCCGAAATGGAAGAAACCGGCCGCCAAGTTCC
GCGAGCTGTTTATGCTGATTTAGAACCCACTGTTTTAGGTAAGGTCTTCA
TTTGTGAGTTTTCTACGGAAACTAATTGTTCGCTTCTTCAATCGGATAAA
TTTCACACTGATTTAAATTTGCGAGTTACCGATCTCGAGATTTAATTTCG
CGAAAATAAAAAGAATTAACAAAGATGCGAATAAGAAATTCACCTTAAAT
TCAAACATATATTTCTTATTATGTCTTGGGAAAACGAATGACAAAATTTT
CGTCTAATCTCGAAAAAAACGGAACAAATTTTATATCCTCAAAATTTATT
TTAGACGAAGTGCGAACCGGTGCTTACCGTGAGCTTTTTCATCCGGATCA
ACTAATTAATGGAAAAGAAGATGCAGCAAACAACTTTGCACGTGGTCACT
ACACGATTGGTCGAACCCTTATTGACGAGATTATCGACAAAGTTCGAAAA
CTTGTAAGTGTGGTCATGTCTTGCTCTTTTGTGTAAAAGATTTATTGATT
TTATAAATTTCACCCATCGAGATTTTAAGAACTGATTTGGAACACCAAAT
AGGAGATATCCTCGAACTAATGCTCTTATAATGACGTTATATATTTAATT
CCCTGCAAGAATCCTTTAACACATTTGCTGCCGCCTGCAAGTAAACTCGT
GGAGGAGTCAAAATACCGCTTGTATTTCAAAGGGCTATAATTTTTCATTA
AGAAATTTTTGCTTCTGCCGCTTTTTATTGCATTTTGAAATCTACGTTAA
ATTCTGCGTCGATTGGTATAATATGCAACTGTTACTTCCAAAGGAGTCTC
AAACTTTCGTATTCTTTAAATTCTATTTTCGTTTCTTTTGTGTTTCAGAC
GGACAACTGTTGTGGTCTTCAAGGTTTCTTGATCTTCCATTCTTTCGGCG
GTGGTACCGGATCTGGATTGACCGCACGTCTTATGGAACGTCTCTCTGTC
GACTACGGCAAAAAATCTAAACTCCAATTTTCCGTATACCCAGCTCCACA
AGTCTCGACAGCTGTTGTTGAACCTTACAACTCAGTTCTCACCACACATT
TTACTTTCGATCATTCCGATTGTGCTTTCATGGTTGATAATGAAGCTATC
TATGATATCTGTCGAAAAAATTTGAATATTGAACGACCTAACTATACCAA
TCTGAATCGATTAATCTCTCAAGTTGTCTCATCTATCACAGCTTCTCTAC
GGTTCGAAGGTAAGTCAGAAACATTACATGCTATGATGCCTTTACATCTC
TGACGAAATGATGTGGATTTTGTAGATATTTTGCCTAATTATTTGATTTT
GTTTTTGTGTATAAGAAAACAATTGTTTGTATAAACTGATACATAAATAG
TTTAATACTGTATAGAAAGATGTAACTCCTATTGTCTTTAACTTTTAGGT
GAATTGAATGTTGACTTGAACGAATTCCAAACTAACTTGGTGCCGTATCC
CCGTATCCATTTCCCATTGTCAAGTTTTGCTCCAATCTTGGCCCCTGATA
AAGCACAAAAATCGTCGTTACACGTCGCTGAGATCACTCAAAATGTTTTT
AAACAAGAAAATCAAATGGTAAAATGTGATCCCAAACAAGGAAAATACAT
GTCATGTTGTTTACTTTACCGTGGAGATGTTGGCCCTCAGGATGTCAACA
AGGCTATTGCAGGAGTCAAAGCCAAATCAGATATTCAATTTGTTGATTGG
TGTCCAACTGGATTTAAAGTCGGTATTAACAACCAGACGTTACACGCACA
AGAAGGTAGCGACATGGCACCTGTTAAACGTGCTCTCTGTATGTTGAGCA
ACACCACTGCAATGGCTGCATTGTGGGCACGTTTGGATCATAAATTTGAT
TTGATGTACCGAAAGAGAGCTTTTGTTCATTGGTAAGCTATTTTGTCATC
GTATTTTTTTATTTTGCTAACTTGCAGCTCGAACTATAAACTTACTACTT
TAGGCAACATGCTTTAACGTTTTAAGTAATTTTGTAGCGCTCCAGCAACT
TTTATCTCATTGATTCAAGTCAGATACAAGTATTTATTGCCTGCTTAAGG
GCAATTGGTTAATGTATTCGCTTTTAGCTTTAGATAGCTTGTGATTCATT
TTACTATCTTCAGGCTAAGAGATTGTAGCAACTTCAGTTCTGTATTTCAA
AAGAAAATCATTAACTCATTTAAAGTAAACTTTCTCATCTGTCGTTTACA
GGTATGTCGGTGAAGGTATGGAAGAAGGTGAATTCAATGAAGCTCGTGAA
GATTTGGCTGGCCTTGAGCGTGATTATGAAGAAGTGGGCGGTGATTCGCC
AAACTCTGATGAAGGAGAGATGGACGATGAATATTAAACCCCCTGACCGC
CCTATTTAGAAACATTTTTTTTCCACGATCAATCAATAAATCACTTTGAA
CCATAACCTTTTGACGTTGCATTTCTTTTATGGTATAAGTGAAGTTTTTT
GATGTGACACCTTTTTTTAGAAAAAATTCTGTATAAGTTAGAACCCACCT
TCCCTTTCAACACAATAATTTTTCATCTCGAATATACTTGACCACCGAGC
CACATCAGTCCTAATGAACCACAGGGCTATTCCGCACTTTAATCCAAGTA
TAAAATTTATAAACAGAATTTTATAAGAAAAATTTTTGATACAACTATTT
ATTATAGCCATATACATGGATATTTTATTGTCGTGTATAATTATTATTGT
CTTTTCCTCTCACTTTTAAAGTATTTGTCTGTAAGAAAAACCATTTTAAA
TAACTTTAAATTTTTTTTTAAATTATGTTTGTCATTATAGGAAAAACCTT
TGGAATTTTTACAACTGTTCTTATCGGTTTTGTATGTAAATAGTAAACGT
AGTTATGGACAAGACAAATTAAAAACAAATTTCGAAAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034417XLOC_034417Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054629-exon-scaffold_243-1575043694:379294..379325TCONS_00054629-exon-scaffold_243-1575043694:379294..379325Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1575043694:378414..378459TCONS_00054629-exon-scaffold_243-1575043694:378414..378459Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1575043694:376359..376405TCONS_00054629-exon-scaffold_243-1575043694:376359..376405Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1575043694:373788..374010TCONS_00054629-exon-scaffold_243-1575043694:373788..374010Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1575043694:373373..373521TCONS_00054629-exon-scaffold_243-1575043694:373373..373521Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1575043694:372617..372977TCONS_00054629-exon-scaffold_243-1575043694:372617..372977Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1575043694:371944..372427TCONS_00054629-exon-scaffold_243-1575043694:371944..372427Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1575043694:370935..371624TCONS_00054629-exon-scaffold_243-1575043694:370935..371624Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1510915933:379294..379325TCONS_00054629-exon-scaffold_243-1510915933:379294..379325Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1510915933:378414..378459TCONS_00054629-exon-scaffold_243-1510915933:378414..378459Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1510915933:376359..376405TCONS_00054629-exon-scaffold_243-1510915933:376359..376405Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1510915933:373788..374010TCONS_00054629-exon-scaffold_243-1510915933:373788..374010Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1510915933:373373..373521TCONS_00054629-exon-scaffold_243-1510915933:373373..373521Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1510915933:372617..372977TCONS_00054629-exon-scaffold_243-1510915933:372617..372977Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1510915933:371944..372427TCONS_00054629-exon-scaffold_243-1510915933:371944..372427Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1510915933:370935..371624TCONS_00054629-exon-scaffold_243-1510915933:370935..371624Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1491911889:379294..379325TCONS_00054629-exon-scaffold_243-1491911889:379294..379325Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1491911889:378414..378459TCONS_00054629-exon-scaffold_243-1491911889:378414..378459Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1491911889:376359..376405TCONS_00054629-exon-scaffold_243-1491911889:376359..376405Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1491911889:373788..374010TCONS_00054629-exon-scaffold_243-1491911889:373788..374010Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1491911889:373373..373521TCONS_00054629-exon-scaffold_243-1491911889:373373..373521Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1491911889:372617..372977TCONS_00054629-exon-scaffold_243-1491911889:372617..372977Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1491911889:371944..372427TCONS_00054629-exon-scaffold_243-1491911889:371944..372427Clytia hemisphaericaexon
TCONS_00054629-exon-scaffold_243-1491911889:370935..371624TCONS_00054629-exon-scaffold_243-1491911889:370935..371624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:370935..379325 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0535129	0.0855437	0.001314	0.0211686	0.11891	0.822527	1.52412	0.385178	2.14295	0.017453	0.255956	0.36118	0.0141346	0.00967751	1.33798	0.0941804	0.897423	0.0197017	0.00371457	0.00550546	0.00219595	0.0425201	0.148176	0.180442	4.85974e-10	0
Blast
[Close]
BLAST of TCONS_00054629 vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 682.945 bits (1761), Expect = 0.000e+0
Identity = 328/447 (73.38%), Postives = 376/447 (84.12%), Query Frame = 3 
Query:  123 MRECVSIHIGQAGCQIGNACWELYCLEHGILPDGTPNPNHEKEQGDSAVSFYSEMEETGRQVPRAVYADLEPTVLDEVRTGAYRELFHPDQLINGKEDAANNFARGHYTIGRTLIDEIIDKVRKLTDNCCGLQGFLIFHSFGGGTGSGLTARLMERLSVDYGKKSKLQFSVYPAPQVSTAVVEPYNSVLTTHFTFDHSDCAFMVDNEAIYDICRKNLNIERPNYTNLNRLISQVVSSITASLRFEGELNVDLNEFQTNLVPYPRIHFPLSSFAPILAPDKAQKSSLHVAEITQNVFKQENQMVKCDPKQGKYMSCCLLYRGDVGPQDVNKAIAGVKAKSDIQFVDWCPTGFKVGINNQTLHAQEGSDMAPVKRALCMLSNTTAMAALWARLDHKFDLMYRKRAFVHWYVGEGMEEGEFNEAREDLAGLERDYEEVGGDSPNS-DEGE 1460
            MREC+SIH+GQAG QIGNACWELYCLEHGI PDG    +     GD + + +      G+ VPRAV+ DLEPTV+DEVRTG YR+LFHP+QLI GKEDAANN+ARGHYTIG+ +ID ++D++RKL D C GLQGFL+FHSFGGGTGSG T+ LMERLSVDYGKKSKL+FS+YPAPQVSTAVVEPYNS+LTTH T +HSDCAFMVDNEAIYDICR+NL+IERP YTNLNRLISQ+VSSITASLRF+G LNVDL EFQTNLVPYPRIHFPL+++AP+++ +KA    L VAEIT   F+  NQMVKCDP+ GKYM+CCLLYRGDV P+DVN AIA +K K  IQFVDWCPTGFKVGIN Q      G D+A V+RA+CMLSNTTA+A  WARLDHKFDLMY KRAFVHWYVGEGMEEGEF+EARED+A LE+DYEEVG DS +  DEGE
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSADGEDEGE 447
The following BLAST results are available for this feature:
BLAST of TCONS_00054629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C0.000e+073.38Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
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