|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054647 ID=TCONS_00054647|Name=TCONS_00054647|organism=Clytia hemisphaerica|type=transcript|length=1170bpRun BLAST on NCBI transcript from alignment at scaffold_243:469301..482021- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054647 ID=TCONS_00054647|Name=TCONS_00054647|organism=Clytia hemisphaerica|type=transcript|length=12721bp|location=Sequence derived from alignment at scaffold_243:469301..482021- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00054647 vs. Swiss-Prot (Human)
Match: NOL9 (Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Homo sapiens GN=NOL9 PE=1 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 3.418e-46 Identity = 144/404 (35.64%), Postives = 207/404 (51.24%), Query Frame = 1
Query: 73 EQILNSQKNISDQQCTVLFCGGKDVGKSSFSKFTVNRLLNKQESVYFLECDCGQTEFTPPAVLSLVKITKPLFGT--THIK-PVKAFFYGYISTKDNPNDYIHLLKELHQFYLNECDTQAPLIVNTQGWVXXXXXXXXXXXXXXXXPSHVVQIQSDQESRNLPFSLDDEVIDTSHGWVTTSESVGSCRQQRSFITLDTVKQTD---------SLHK--GVFT--------RNR----------SITRYFTQMYHHPVDVDQYWIPPPLS---TIKPYVINTSDIALHIMNQNVTEDLMLMAFNVSLVALAKVPDDLVFDSSHSGLRLLKDQPRAAEYLGLAIIRNIEKIDALTTRLY-IITPEPVDVLDQVNVLLKGNIQLSQSYFT--QDPRGKHPYFSYDYD 1170
E+++N D +L CG +DVGKS+F+++ +N LLN V +LECD GQTEFTPP +SL+ IT+P+ G TH++ P K +YG S K+N +YI ++K + Y E +PLIVNT GWV GL LLIDL+R+L PSHVVQ +SD S+ +P L + +D G T S++ R+ R D ++ D + HK GV+T RNR SI Y +Q+ Q +P PLS ++ PY + + +AL I + +V +L A N S V L K+ DD+ ++ +L Q + LG I R I+ + RLY I+TP P + L VN LL G I + + G PY + DY+
Sbjct: 286 EELVNVSCEEVDGCPVILVCGSQDVGKSTFNRYLINHLLNSLPCVDYLECDLGQTEFTPPGCISLLNITEPVLGPPFTHLRTPQKMVYYGKPSCKNNYENYIDIVKYVFSAYKRE----SPLIVNTMGWVSDQGLLLLIDLIRLLSPSHVVQFRSDH-SKYMP-DLTPQYVDDMDGLYTKSKTKMRNRRFRLAAFADALEFADEEKESPVEFTGHKLIGVYTDFAFRITPRNRESHNKILRDLSILSYLSQL--------QPPMPKPLSPLHSLTPYQVPFNAVALRITHSDVAPTHILYAVNASWVGLCKIQDDV---RGYTNGPILLAQTPICDCLGFGICRGID----MEKRLYHILTPVPPEELRTVNCLLVGAIAIPHCVLKCQRGIEGTVPYVTTDYN 668 The following BLAST results are available for this feature:
BLAST of TCONS_00054647 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.