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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054666 ID=TCONS_00054666|Name=TCONS_00054666|organism=Clytia hemisphaerica|type=transcript|length=868bp
GATCCTTATTTGTTGTAATTGGAAACGATATCGATGgcttgattgttttg
atttctacGGAAACAtcaataatgcttaaaatgcattttaacGTCGGTAG
AGTCTGCACCACTAACACAACTTTCAACAAACGAGAAAGTGAAAGATGAA
TTCTGTTAGATTGTTATCTTTGCTTTCTTTGCTTGCTCAAAGTTTATGCT
CAGTTTGTATTTTACAAAGTTATCCGTTATGGATATACTCTCGCCCAACT
ATTTGTTTAGTTCGTGGAGGACATATCGCTCCATCCCAATCAGACTTCGA
ATTGACGAAAGGGGAAGATGTCATTATCAAAGTGAACTTGTATCCTTATA
TCGATGAACATAGTGATTGGGTAAGTGTATACTATGCAGATCATGAAAAT
TCTTCAATAGACGCCATCTGGAATGATGATACTGGTGTAACGGAGCACGG
AATCAACAAGTTTGGTCAGCGTTTCATGGTTACATACACCAAAGATAAAA
GTGTGGAGGTGGAGATCAAAGAAATATCACGGTCAATGGTTCTCTACGTC
TCAACTGTCTTCCTCAACGCAAAAGGTCAAATCAAAAATGGTCCACTCTA
TTCTACATTTAGAATCACACTTAGGAAAGCCGGATACAAGCAAGTGACAA
CCAGTCCAGTTTGTTACAAAGGAAAAGGTAGTTCACCTGGTTTCTTTACG
ATCAAAGATGCAGGCTCTATCGCCTTTGTCAAATTGCAACATGTCTCTGG
GTACATTGCTTGTGGTGAAAGACTCGTAAGTCGTTGGGCTTGTGGATGCT
GTTATAAAGAGAACACTGTGCTAACACTTATAACAGATTCACAAGATAGA
CCATTATTCCCTGATtct Run BLAST on NCBI transcript from alignment at scaffold_243:952567..953986- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054666 ID=TCONS_00054666|Name=TCONS_00054666|organism=Clytia hemisphaerica|type=transcript|length=1420bp|location=Sequence derived from alignment at scaffold_243:952567..953986- (Clytia hemisphaerica)
GATCCTTATTTGTTGTAATTGGAAACGATATCGATGGCTTGATTGTTTTG
ATTTCTACGGAAACATCAATAATGCTTAAAATGCATTTTAACGTCGGTAG
AGTCTGCACCACTAACACAACTTTCAACAAACGAGAAAGTGAAAGATGAA
TTCTGTTAGATTGTTATCTTTGCTTTCTTTGCTTGCTCAAAGTTTATGCT
CAGGTAAATCTTTTAATCATTCAAAGACCTGAAATTTCCTGACACTCTTG
TTTACTTATTCATACCTTCCAGAAATCATAGCAACGCCTGGATTGTAATT
GTTATTGGCAGATTTTCTGATATTTATTCCATTTTTATATCCAAACTGGA
CAGTATACCTCTAACTCCTTTGAACTTTAATCTTTCTCTCTTTGTAGTTT
GTATTTTACAAAGTTATCCGTTATGGATATACTCTCGCCCAACTATTTGT
TTAGTTCGTGGAGGACATATCGCTCCATCCCAATCAGACTTCGAATTGAC
GAAAGGGGAAGATGTCATTATCAAAGTGAACTTGTATCCTTATATCGATG
AACATAGTGATTGGGTAAGTGTATACTATGCAGATCATGAAAATTCTTCA
ATAGACGCCATCTGGAATGATGATACTGGTGTAACGGAGCACGGAATCAA
CAAGTTTGGTCAGCGTTTCATGGTTACATACACCAAAGATAAAAGTGTGG
AGGTGGAGATCAAAGAAATATCACGGTCAATGGTTCTCTACGTCTCAACT
GTCTTCCTCAACGCAAAAGGTCAAATCAAAAATGGTCCACTCTATTCTAC
ATTTAGAATCACACTTAGGAAAGGTACGAGTTTTTATCAGTTTTGTTGAC
TCCTACAACCCTATATCGAACCTTTGATGGTACTCTCCAAAACTTTTCTG
CGTGAGCAATAAACTGAAATATACTGGTTGACTGTCATTGCGCATTAAAA
TTACGATTGTCCACCGGTATATCTTTCAATTTTCTAAAAAACGGCCAAAA
TAAACCTTCTTTACTGTACGGCTGTAACTTTTTATTTAAAAAATATGCGA
GAAAACTGTGCTCGCATACTTTCGTGGCTGACTGCAGTCACAGTAAAGAG
ATTTCAATTCTCAATTATGATAGCTTCTCCTGACAAAACTATTCCCTTTT
GAAATTCTTTATCACTTTATTTTTCTAGCAGCCGGATACAAGCAAGTGAC
AACCAGTCCAGTTTGTTACAAAGGAAAAGGTAGTTCACCTGGTTTCTTTA
CGATCAAAGATGCAGGCTCTATCGCCTTTGTCAAATTGCAACATGTCTCT
GGGTACATTGCTTGTGGTGAAAGACTCGTAAGTCGTTGGGCTTGTGGATG
CTGTTATAAAGAGAACACTGTGCTAACACTTATAACAGATTCACAAGATA
GACCATTATTCCCTGATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054666-exon-scaffold_243-1575043694:953784..953986 | TCONS_00054666-exon-scaffold_243-1575043694:953784..953986 | Clytia hemisphaerica | exon |
| TCONS_00054666-exon-scaffold_243-1575043694:953164..953589 | TCONS_00054666-exon-scaffold_243-1575043694:953164..953589 | Clytia hemisphaerica | exon |
| TCONS_00054666-exon-scaffold_243-1575043694:952567..952805 | TCONS_00054666-exon-scaffold_243-1575043694:952567..952805 | Clytia hemisphaerica | exon |
| TCONS_00054666-exon-scaffold_243-1510915933:953784..953986 | TCONS_00054666-exon-scaffold_243-1510915933:953784..953986 | Clytia hemisphaerica | exon |
| TCONS_00054666-exon-scaffold_243-1510915933:953164..953589 | TCONS_00054666-exon-scaffold_243-1510915933:953164..953589 | Clytia hemisphaerica | exon |
| TCONS_00054666-exon-scaffold_243-1510915933:952567..952805 | TCONS_00054666-exon-scaffold_243-1510915933:952567..952805 | Clytia hemisphaerica | exon |
| TCONS_00054666-exon-scaffold_243-1491911889:953784..953986 | TCONS_00054666-exon-scaffold_243-1491911889:953784..953986 | Clytia hemisphaerica | exon |
| TCONS_00054666-exon-scaffold_243-1491911889:953164..953589 | TCONS_00054666-exon-scaffold_243-1491911889:953164..953589 | Clytia hemisphaerica | exon |
| TCONS_00054666-exon-scaffold_243-1491911889:952567..952805 | TCONS_00054666-exon-scaffold_243-1491911889:952567..952805 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:952567..953986 - |
Blast
The following BLAST results are available for this feature:
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