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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054668 ID=TCONS_00054668|Name=TCONS_00054668|organism=Clytia hemisphaerica|type=transcript|length=871bp
GATCCTTATTTGTTGTAATTGGAAACGATATCGATGgcttgattgttttg
atttctacGGAAACAtcaataatgcttaaaatgcattttaacGTCGGTAG
AGTCTGCACCACTAACACAACTTTCAACAAACGAGAAAGTGAAAGATGAA
TTCTGTTAGATTGTTATCTTTGCTTTCTTTGCTTGCTCAAAGTTTATGCT
CAGTTTGTATTTTACAAAGTTATCCGTTATGGATATACTCTCGCCCAACT
ATTTGTTTAGTTCGTGGAGGACATATCGCTCCATCCCAATCAGACTTCGA
ATTGACGAAAGGGGAAGATGTCATTATCAAAGTGAACTTGTATCCTTATA
TCGATGAACATAGTGATTGGGTAAGTGTATACTATGCAGATCATGAAAAT
TCTTCAATAGACGCCATCTGGAATGATGATACTGGTGTAACGGAGCACGG
AATCAACAAGTTTGGTCAGCGTTTCATGGTTACATACACCAAAGATAAAA
GTGTGGAGGTGGAGATCAAAGAAATATCACGGTCAATGGTTCTCTACGTC
TCAACTGTCTTCCTCAACGCAAAAGGTCAAATCAAAAATGGTCCACTCTA
TTCTACATTTAGAATCACACTTAGGAAAGCAGCCGGATACAAGCAAGTGA
CAACCAGTCCAGTTTGTTACAAAGGAAAAGGTAGTTCACCTGGTTTCTTT
ACGATCAAAGATGCAGGCTCTATCGCCTTTGTCAAATTGCAACATGTCTC
TGGGTACATTGCTTGTGGTGAAAGACTCGTAAGTCGTTGGGCTTGTGGAT
GCTGTTATAAAGAGAACACTGTGCTAACACTTATAACAGATTCACAAGAT
AGACCATTATTCCCTGATtct Run BLAST on NCBI protein sequence of TCONS_00054668-protein >TCONS_00054668-protein ID=TCONS_00054668-protein|Name=TCONS_00054668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MNSVRLLSLLSLLAQSLCSVCILQSYPLWIYSRPTICLVRGGHIAPSQSD
FELTKGEDVIIKVNLYPYIDEHSDWVSVYYADHENSSIDAIWNDDTGVTE
HGINKFGQRFMVTYTKDKSVEVEIKEISRSMVLYVSTVFLNAKGQIKNGP
LYSTFRITLRKAAGYKQVTTSPVCYKGKGSSPGFFTIKDAGSIAFVKLQH
VSGYIACGERLVSRWACGCCYKENTVLTLITDSQDRPLFPDS Run BLAST on NCBI transcript from alignment at scaffold_243:952567..953986- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054668 ID=TCONS_00054668|Name=TCONS_00054668|organism=Clytia hemisphaerica|type=transcript|length=1420bp|location=Sequence derived from alignment at scaffold_243:952567..953986- (Clytia hemisphaerica)
GATCCTTATTTGTTGTAATTGGAAACGATATCGATGGCTTGATTGTTTTG
ATTTCTACGGAAACATCAATAATGCTTAAAATGCATTTTAACGTCGGTAG
AGTCTGCACCACTAACACAACTTTCAACAAACGAGAAAGTGAAAGATGAA
TTCTGTTAGATTGTTATCTTTGCTTTCTTTGCTTGCTCAAAGTTTATGCT
CAGGTAAATCTTTTAATCATTCAAAGACCTGAAATTTCCTGACACTCTTG
TTTACTTATTCATACCTTCCAGAAATCATAGCAACGCCTGGATTGTAATT
GTTATTGGCAGATTTTCTGATATTTATTCCATTTTTATATCCAAACTGGA
CAGTATACCTCTAACTCCTTTGAACTTTAATCTTTCTCTCTTTGTAGTTT
GTATTTTACAAAGTTATCCGTTATGGATATACTCTCGCCCAACTATTTGT
TTAGTTCGTGGAGGACATATCGCTCCATCCCAATCAGACTTCGAATTGAC
GAAAGGGGAAGATGTCATTATCAAAGTGAACTTGTATCCTTATATCGATG
AACATAGTGATTGGGTAAGTGTATACTATGCAGATCATGAAAATTCTTCA
ATAGACGCCATCTGGAATGATGATACTGGTGTAACGGAGCACGGAATCAA
CAAGTTTGGTCAGCGTTTCATGGTTACATACACCAAAGATAAAAGTGTGG
AGGTGGAGATCAAAGAAATATCACGGTCAATGGTTCTCTACGTCTCAACT
GTCTTCCTCAACGCAAAAGGTCAAATCAAAAATGGTCCACTCTATTCTAC
ATTTAGAATCACACTTAGGAAAGGTACGAGTTTTTATCAGTTTTGTTGAC
TCCTACAACCCTATATCGAACCTTTGATGGTACTCTCCAAAACTTTTCTG
CGTGAGCAATAAACTGAAATATACTGGTTGACTGTCATTGCGCATTAAAA
TTACGATTGTCCACCGGTATATCTTTCAATTTTCTAAAAAACGGCCAAAA
TAAACCTTCTTTACTGTACGGCTGTAACTTTTTATTTAAAAAATATGCGA
GAAAACTGTGCTCGCATACTTTCGTGGCTGACTGCAGTCACAGTAAAGAG
ATTTCAATTCTCAATTATGATAGCTTCTCCTGACAAAACTATTCCCTTTT
GAAATTCTTTATCACTTTATTTTTCTAGCAGCCGGATACAAGCAAGTGAC
AACCAGTCCAGTTTGTTACAAAGGAAAAGGTAGTTCACCTGGTTTCTTTA
CGATCAAAGATGCAGGCTCTATCGCCTTTGTCAAATTGCAACATGTCTCT
GGGTACATTGCTTGTGGTGAAAGACTCGTAAGTCGTTGGGCTTGTGGATG
CTGTTATAAAGAGAACACTGTGCTAACACTTATAACAGATTCACAAGATA
GACCATTATTCCCTGATTCT Coding sequence (CDS) from alignment at scaffold_243:952567..953986- >TCONS_00054668 ID=TCONS_00054668|Name=TCONS_00054668|organism=Clytia hemisphaerica|type=CDS|length=2178bp|location=Sequence derived from alignment at scaffold_243:952567..953986- (Clytia hemisphaerica)
CAGCCGGATACAAGCAAGTGACAACCAGTCCAGTTTGTTACAAAGGAAAA
GGTAGTTCACCTGGTTTCTTTACGATCAAAGATGCAGGCTCTATCGCCTT
TGTCAAATTGCAACATGTCTCTGGGTACATTGCTTGTGGTGAAAGACTCG
TAAGTCGTTGGGCTTGTGGATGCTGTTATAAAGAGAACACTGTGCTAACA
CTTATAACAGATTCACAAGATAGACCATTATTCCCTGATTCTTTTGTATT
TTACAAAGTTATCCGTTATGGATATACTCTCGCCCAACTATTTGTTTAGT
TCGTGGAGGACATATCGCTCCATCCCAATCAGACTTCGAATTGACGAAAG
GGGAAGATGTCATTATCAAAGTGAACTTGTATCCTTATATCGATGAACAT
AGTGATTGGGTAAGTGTATACTATGCAGATCATGAAAATTCTTCAATAGA
CGCCATCTGGAATGATGATACTGGTGTAACGGAGCACGGAATCAACAAGT
TTGGTCAGCGTTTCATGGTTACATACACCAAAGATAAAAGTGTGGAGGTG
GAGATCAAAGAAATATCACGGTCAATGGTTCTCTACGTCTCAACTGTCTT
CCTCAACGCAAAAGGTCAAATCAAAAATGGTCCACTCTATTCTACATTTA
GAATCACACTTAGGAAAGATGAATTCTGTTAGATTGTTATCTTTGCTTTC
TTTGCTTGCTCAAAGTTTATGCTCAGCAGCCGGATACAAGCAAGTGACAA
CCAGTCCAGTTTGTTACAAAGGAAAAGGTAGTTCACCTGGTTTCTTTACG
ATCAAAGATGCAGGCTCTATCGCCTTTGTCAAATTGCAACATGTCTCTGG
GTACATTGCTTGTGGTGAAAGACTCGTAAGTCGTTGGGCTTGTGGATGCT
GTTATAAAGAGAACACTGTGCTAACACTTATAACAGATTCACAAGATAGA
CCATTATTCCCTGATTCTTTTGTATTTTACAAAGTTATCCGTTATGGATA
TACTCTCGCCCAACTATTTGTTTAGTTCGTGGAGGACATATCGCTCCATC
CCAATCAGACTTCGAATTGACGAAAGGGGAAGATGTCATTATCAAAGTGA
ACTTGTATCCTTATATCGATGAACATAGTGATTGGGTAAGTGTATACTAT
GCAGATCATGAAAATTCTTCAATAGACGCCATCTGGAATGATGATACTGG
TGTAACGGAGCACGGAATCAACAAGTTTGGTCAGCGTTTCATGGTTACAT
ACACCAAAGATAAAAGTGTGGAGGTGGAGATCAAAGAAATATCACGGTCA
ATGGTTCTCTACGTCTCAACTGTCTTCCTCAACGCAAAAGGTCAAATCAA
AAATGGTCCACTCTATTCTACATTTAGAATCACACTTAGGAAAGATGAAT
TCTGTTAGATTGTTATCTTTGCTTTCTTTGCTTGCTCAAAGTTTATGCTC
AGCAGCCGGATACAAGCAAGTGACAACCAGTCCAGTTTGTTACAAAGGAA
AAGGTAGTTCACCTGGTTTCTTTACGATCAAAGATGCAGGCTCTATCGCC
TTTGTCAAATTGCAACATGTCTCTGGGTACATTGCTTGTGGTGAAAGACT
CGTAAGTCGTTGGGCTTGTGGATGCTGTTATAAAGAGAACACTGTGCTAA
CACTTATAACAGATTCACAAGATAGACCATTATTCCCTGATTCTTTTGTA
TTTTACAAAGTTATCCGTTATGGATATACTCTCGCCCAACTATTTGTTTA
GTTCGTGGAGGACATATCGCTCCATCCCAATCAGACTTCGAATTGACGAA
AGGGGAAGATGTCATTATCAAAGTGAACTTGTATCCTTATATCGATGAAC
ATAGTGATTGGGTAAGTGTATACTATGCAGATCATGAAAATTCTTCAATA
GACGCCATCTGGAATGATGATACTGGTGTAACGGAGCACGGAATCAACAA
GTTTGGTCAGCGTTTCATGGTTACATACACCAAAGATAAAAGTGTGGAGG
TGGAGATCAAAGAAATATCACGGTCAATGGTTCTCTACGTCTCAACTGTC
TTCCTCAACGCAAAAGGTCAAATCAAAAATGGTCCACTCTATTCTACATT
TAGAATCACACTTAGGAAAGATGAATTCTGTTAGATTGTTATCTTTGCTT
TCTTTGCTTGCTCAAAGTTTATGCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054668-exon-scaffold_243-1575043694:953784..953986 | TCONS_00054668-exon-scaffold_243-1575043694:953784..953986 | Clytia hemisphaerica | exon |
| TCONS_00054668-exon-scaffold_243-1575043694:953164..953589 | TCONS_00054668-exon-scaffold_243-1575043694:953164..953589 | Clytia hemisphaerica | exon |
| TCONS_00054668-exon-scaffold_243-1575043694:952567..952808 | TCONS_00054668-exon-scaffold_243-1575043694:952567..952808 | Clytia hemisphaerica | exon |
| TCONS_00054668-exon-scaffold_243-1510915933:953784..953986 | TCONS_00054668-exon-scaffold_243-1510915933:953784..953986 | Clytia hemisphaerica | exon |
| TCONS_00054668-exon-scaffold_243-1510915933:953164..953589 | TCONS_00054668-exon-scaffold_243-1510915933:953164..953589 | Clytia hemisphaerica | exon |
| TCONS_00054668-exon-scaffold_243-1510915933:952567..952808 | TCONS_00054668-exon-scaffold_243-1510915933:952567..952808 | Clytia hemisphaerica | exon |
| TCONS_00054668-exon-scaffold_243-1491911889:953784..953986 | TCONS_00054668-exon-scaffold_243-1491911889:953784..953986 | Clytia hemisphaerica | exon |
| TCONS_00054668-exon-scaffold_243-1491911889:953164..953589 | TCONS_00054668-exon-scaffold_243-1491911889:953164..953589 | Clytia hemisphaerica | exon |
| TCONS_00054668-exon-scaffold_243-1491911889:952567..952808 | TCONS_00054668-exon-scaffold_243-1491911889:952567..952808 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:952567..953986 - |
Blast
The following BLAST results are available for this feature:
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