TCONS_00054825 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054825
Unique NameTCONS_00054825
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054825 ID=TCONS_00054825|Name=TCONS_00054825|organism=Clytia hemisphaerica|type=transcript|length=401bp
CCTCAACCAGAGGTGTGCTGATAAGTCAAAATAAtgttaaacaaaataaa
atataaataaaaagttGGCTGGCTGATAAGTTGTTGCTGCCAACATGAAG
cGTGTTTTCACAATACCAGAGCGAGTCCATGGCAGTGACCGTGTGACAAT
GGCCTGGCAAAACCAACAGGGAAATTTTTTGGCAGTTACAGGagtCAGTC
GCCTAGTAACGATATATGACCGCCATGGTGAATTAAAAGATGAAGTCATC
TTACCAGGAGTTTGCACAGGAATTTCATGGGATAAAGATGGAGATACATT
GGCTATTGGGAACCAAAAGACAGGAATGATTTATTTATGGGATGCAAATA
CAATGAAGACTACACAACTAGAGTCTGGTTTAAGTGACAAGAAGGGAAGA
G
Run BLAST on NCBI

transcript from alignment at scaffold_245:560899..564086-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054825 ID=TCONS_00054825|Name=TCONS_00054825|organism=Clytia hemisphaerica|type=transcript|length=3188bp|location=Sequence derived from alignment at scaffold_245:560899..564086- (Clytia hemisphaerica)
CCTCAACCAGAGGTGTGCTGATAAGTCAAGTAAGTCAATCTCAATTAAAA
AAGAAGACACTACATTCCTTCCATTTTCGATGAGCAAAACTTGAAAAAGA
AAACAAAAAATGGACGACAAGAAAATATTTACAAAAATAAACAGGTTAGT
AAAACGCTAAAGTTCATATAAAACAGACGCTTTTTTAGTGAAAAAGCGCG
TGGTTTTGAAAAGTTCAAATACCCCTGTATCATCTCGGAGGAGAGTTAAA
GTATTACCTGAGAGTGGAGCTCTAATTTTTTCTTTCGAAAGATTGTTCAC
GCACTGGTTCCTTGTCTGCGAACTGGGTCCGAATGGCACTTGCTTTAACG
ACTTATCATTCCAAGAAGAAGCTTTCAAATAAAGTGAAAACAAACTGAAA
GAAGGACTTCAAGCTCATCTACAAGATGGTCTAAAAGGATTTATGTAAAA
ACCAAAAGTATATAAGTGAGAAAAGTGAAGTGAGAAAAGTGAAAATAGAG
TTCGGTGTTTGTGCACTGGGCACCCCCCCCTCTATGCATGTTATTAGCCT
CCACTGTTGCAAGTTTTACCTGATCTCAGGGTATCTTTTTTTGAAAAAAG
AAGACATTGCATTGTTTTATTTTTTTTGAAGAAAATAGCTTGGAAAAGGT
TGAAATGAGTCACTGGAAATGGAGGAACAAAAAGTAAATAATAAGTTTTT
CTGAAAGGAGAAACCCCGAATGAAAAGAAAATCCATTTCGGCAGAAATAA
AAACTTTTTTTTGGGACATTCCCATGCTAAAGAAGCAAAAAAGTGAAAAA
AACTACATGAAAATTAAAGAACTAGAATTAGTGAATGTAATTTTTGAATT
TCTCACCTTTTTTCTGATAAAAAAGTTTCAGCCTTCAACTGTGTTTTCCT
CCATTTCCAGAAATATTTGTTTCGTCAATAGTTGCAACTTTTTTCTTCCC
TGTAGCATACAGATTTTGAAATATTGCAAAAACGTTCGGCACTTTACCAG
TTTGCGGTCTAGCCCGTGTCCACAGTGTTATATACCGCTAAAAAGCTAAG
ATCACGGGCTTTCTTTTATTAAAAACCGGAACACTTTAGCATATAGAAAA
AAGGTTAGAATGGTTCAAAGTTCACGGAAAAATGAAACGACAAAAGTTGA
GTTGACTTCTGGAGTTGGCGTTCAACATTTTTTAATTCAAATTTTTCACT
TACATTTAACTTTTTGAAAATCCTTTTTGACCAACCTTTTAGACAACTTT
TAACGTGCTCTTCGTGTTTGTTTTGATTTTTGTTTGGAGTGAGTGATCTT
CTTATAGAATAAAAAGCTTTCGAAGGGAGCGGTACTAGTGCCCAGTTCTC
AACCGAAGTACCAGTCTGCAACTGATTGCTTAAAAGAGAAAATCAGTGCT
CTAATTGCAGGTTAGGTCATATAAATTGATCAGGATGATAAAAAAACTCT
TTCCCGTATTAAATTTCTTTTCACTCGTTCTCTTGTTTGAATGAATGAGT
TTTTGAATGTTGCAAAAATAATCTCAAACTCTTGATTTTAAGTCTTCCTT
TAATTTCTTTTAGAATAATGTTAAACAAAATAAAATATAAATAAAAAGTT
GGCTGGCTGATAAGTTGTTGCTGCCAACATGAAGGTAAGACTTTTGTATC
AATGGTATTAACCAAACACTAGGTCCAAACACTATCAAGCTATTACCAGA
AACTGTCCATAAAATCATGCAGAATTCTCTCTATGGAAAGCTTTAAAAAA
CTTACTGATTAATTACAAATAAACGATCCTTCATATTCTTAAATTTTTTA
ATTTTCTAGCGTGTTTTCACAATACCAGAGCGAGTCCATGGCAGTGACCG
TGTGACAATGGCCTGGCAAAACCAACAGGGAAATTTTTTGGCAGTTACAG
GGTAAACAATTGCTTTAAATTTACCAGTCAGATACCTTTATAACAATCAT
AGCCAATTTTGTGCAATGAATGTTCACAAGATCTAATGCTTTAGAAAAAT
AGGGGAATAGACGATGTCTTCAATTTAGTAGCAAACCCCTAATTTAACTC
AGCAATTGTACAATACCAATACAACTGTTCTACCAAGTGAGTGGCACATC
CCCGTGCGCAGATTTGTTATTAATAAAGTTAATGCTACTTTCTATTTATT
TTAGAGTCAGTCGCCTAGTAACGATATATGACCGCCATGGTGAATTAAAA
GATGAAGTCATCTTACCAGGGTATGTTTTAGAATGATTTATATTTGCTTA
TCAATCACTTTTCTGGTATATATTTTTACTGAGTGATAAGAAATCTTAAA
TTCCTTCCAGTATTTTGTTTTGATCTATCTTTACCTTTAGAGTTTGCACA
GGAATTTCATGGGATAAAGATGGAGATACATTGGCTATTGGGAACCAAAA
GACAGGTTATTATTTTGACAATTCATACTCAAAATCTCATATGTTGTGTT
AAATAATTTTATCAACGGCTATAATATTTAGAATCACTTTTGAATCAAAG
CTACAACGCGCAGATTTGATATTAAGACAAACTATCTATTTGTTGATATA
AAGTCCAAAAATTTTCTTCTGTATACTTGAATCATAATAAATATTTGTTT
ATCTCAAGGAATGATTTATTTATGGGATGCAAATACAATGAAGACTACAC
AACTAGAGTCTGGTTTAAGGTAAACTTTTATTCTTTGTTAACATTATAAG
TCTTTTTGAAAGCTTTTCCCTAGGTTTTCCTATTGACTGACTTTTTGATA
TGAATTTTAAGTTTATGGCTTTTTATTCTTAAACAATTAAGGCAAGTTTT
TTTGAAAGCCTTTCCCTATTGACTGACTTTTGGATATGAATTTTAAGTTT
ATGTCTCCATCACTGAACATAATGTTTAAAGCTGAATAACCATATAACTG
AATTACAATTACAAAAACTCCTTTTCAACAAAAAACTCTTTCTCTCCTGT
TGTAGTAGACCCTCCCTGGTGCCACACCTCAACATTCCCTTCAAAAAAGC
ACTAATGATGCTTTGGTCTGGTTTAAAAGTGTCCTTTAATAGTGTTCTGA
TTATGTTTTGTCAGTATAAAACACTGTGTGCTCTTTTACGTTTTGCTAGT
TATTAAATAGTAAGTTTCTTGATTTTTTGGTTTAAGAATATACTATTCAA
GTTTTTTCTATTCATTTTTAGTGACAAGAAGGGAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034537XLOC_034537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054825-exon-scaffold_245-1575043694:564058..564086TCONS_00054825-exon-scaffold_245-1575043694:564058..564086Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1575043694:562453..562523TCONS_00054825-exon-scaffold_245-1575043694:562453..562523Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1575043694:562186..562277TCONS_00054825-exon-scaffold_245-1575043694:562186..562277Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1575043694:561867..561932TCONS_00054825-exon-scaffold_245-1575043694:561867..561932Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1575043694:561682..561746TCONS_00054825-exon-scaffold_245-1575043694:561682..561746Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1575043694:561418..561478TCONS_00054825-exon-scaffold_245-1575043694:561418..561478Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1575043694:560899..560915TCONS_00054825-exon-scaffold_245-1575043694:560899..560915Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1510915933:564058..564086TCONS_00054825-exon-scaffold_245-1510915933:564058..564086Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1510915933:562453..562523TCONS_00054825-exon-scaffold_245-1510915933:562453..562523Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1510915933:562186..562277TCONS_00054825-exon-scaffold_245-1510915933:562186..562277Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1510915933:561867..561932TCONS_00054825-exon-scaffold_245-1510915933:561867..561932Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1510915933:561682..561746TCONS_00054825-exon-scaffold_245-1510915933:561682..561746Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1510915933:561418..561478TCONS_00054825-exon-scaffold_245-1510915933:561418..561478Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1510915933:560899..560915TCONS_00054825-exon-scaffold_245-1510915933:560899..560915Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1491911889:564058..564086TCONS_00054825-exon-scaffold_245-1491911889:564058..564086Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1491911889:562453..562523TCONS_00054825-exon-scaffold_245-1491911889:562453..562523Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1491911889:562186..562277TCONS_00054825-exon-scaffold_245-1491911889:562186..562277Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1491911889:561867..561932TCONS_00054825-exon-scaffold_245-1491911889:561867..561932Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1491911889:561682..561746TCONS_00054825-exon-scaffold_245-1491911889:561682..561746Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1491911889:561418..561478TCONS_00054825-exon-scaffold_245-1491911889:561418..561478Clytia hemisphaericaexon
TCONS_00054825-exon-scaffold_245-1491911889:560899..560915TCONS_00054825-exon-scaffold_245-1491911889:560899..560915Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:560899..564086 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	20.1614	12.0086	7.1558	3.61134	1.18296	0.717938	3.82194	0	1.6477	4.57181	0	0.7979	0	0	1.9432	0	0.919631	0.701484	0.374739	2.09897	28.2076	21.9298	0	0	0	0
Blast
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BLAST of TCONS_00054825 vs. Swiss-Prot (Human)
Match: WDR19 (WD repeat-containing protein 19 OS=Homo sapiens GN=WDR19 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.027e-29
Identity = 49/99 (49.49%), Postives = 69/99 (69.70%), Query Frame = 2 
Query:   95 MKRVFTIPERVHGSDRVTMAWQNQQGNFLAVTGVSRLVTIYDRHGELKDEVILPGVCTGISWDKDGDTLAIGNQKTGMIYLWDANTMKTTQLESGLSDK 391
            MKR+F++ E+      +  AWQ   GN+LAVTG   +V I+DRHG+ + E+ LPG C  + WDKDGD LA+  +K+  IYLWDANT KT+QL++G+ D+
Sbjct:    1 MKRIFSLLEKTWLGAPIQFAWQKTSGNYLAVTGADYIVKIFDRHGQKRSEINLPGNCVAMDWDKDGDVLAVIAEKSSCIYLWDANTNKTSQLDNGMRDQ 99
The following BLAST results are available for this feature:
BLAST of TCONS_00054825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR194.027e-2949.49WD repeat-containing protein 19 OS=Homo sapiens GN... [more]
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