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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054846 ID=TCONS_00054846|Name=TCONS_00054846|organism=Clytia hemisphaerica|type=transcript|length=5069bpRun BLAST on NCBI protein sequence of TCONS_00054846-protein >TCONS_00054846-protein ID=TCONS_00054846-protein|Name=TCONS_00054846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1265bp MDKMLRIVLFLVGCFGLGSCLPPNNASLEFVAKDWAPPWPYPFPRPPNLPRun BLAST on NCBI transcript from alignment at scaffold_245:786751..799438- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054846 ID=TCONS_00054846|Name=TCONS_00054846|organism=Clytia hemisphaerica|type=transcript|length=12688bp|location=Sequence derived from alignment at scaffold_245:786751..799438- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_245:786751..799438- >TCONS_00054846 ID=TCONS_00054846|Name=TCONS_00054846|organism=Clytia hemisphaerica|type=CDS|length=68364bp|location=Sequence derived from alignment at scaffold_245:786751..799438- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054846 vs. Swiss-Prot (Human)
Match: VGFR1 (Vascular endothelial growth factor receptor 1 OS=Homo sapiens GN=FLT1 PE=1 SV=2) HSP 1 Score: 339.347 bits (869), Expect = 1.592e-95 Identity = 241/697 (34.58%), Postives = 343/697 (49.21%), Query Frame = 3
Query: 1686 SGSYICEAENQRGTNSNSQTLEINIEPLVKAEITDFEDMSVSQNDRKNLRIFCNATGNPAPVITWTKDGKLLDDLTVINGINQCRTLKKGIYIRKKKR---SLVICNLNFKDHGGTYECCAKNALADVKESLELLVYAKPVIRDLPA--------ERTFGVGDGDSIFCTSVANPPANVTWERVTNNSTVQIG---FTAVEKVPLDFAKVSKDDAGPYRCTATNEFGTVSETVDVIVKGTTGGLLGSDQKSTXXXXXXXXXXXXXXXXXXXCWYRRHLKAKYAKYLEPNETFILDPDRTLFD-QSNDLPYDMS-WEFPRERVTFIKTLGSGAFGQVWLAEAEGLHSFKPRENTPDARRRRKSIQKGRNRYHSMSFRYKKQTQNFEMSLEKMMVAVKTLKDGAAESEYKDLASELKILIHLGEHKNIVNLLGACT-TGGKLCVILECCPHGSLLNFLRSKRDVF----------KPAWAKHE-------------------------------VDMEKE----------CSYIDLAMTAWQVSKGMDFLQTKKLIHRDLAARNVLVGDDYIMKIADFGLARDIYADEFYLKNTTGLLPIKWMAPESIFDRVYTTSSDVWSYGILLWEIFTLGGSPYPGLPT-ENLRDYLESGRRMECPEQCPKDIYEIMLDCWAKSPYERPLFAQITERLNNCMKQNI 3569
SG YIC A N+ GT + + I P + E M D L++ C +TW LL TV N K+ + I K+ +L I N++ +D GTY C A+N V E+L + IRD A + T + ++ C + P +TW + NN +Q L +V+++D G Y C ATN+ G+V + + V+GT SD+ + + + + + + + + R +K ++ + I+DPD D Q LPYD S WEF RER+ K+LG GAFG+V A A G+ + +P R VAVK LK+GA SEYK L +ELKIL H+G H N+VNLLGACT GG L VI+E C +G+L N+L+SKRD+F +P K E D+E+E + DL ++QV++GM+FL ++K IHRDLAARN+L+ ++ ++KI DFGLARDIY + Y++ LP+KWMAPESIFD++Y+T SDVWSYG+LLWEIF+LGGSPYPG+ E+ L G RM PE +IY+IMLDCW + P ERP FA++ E+L + ++ N+
Sbjct: 530 SGIYICIASNKVGTVGRNISFYITDVP--NGFHVNLEKMPTEGED---LKLSCTVNKFLYRDVTWI----LLR--TVNNRTMHYSISKQKMAITKEHSITLNLTIMNVSLQD-SGTYACRARN----VYTGEEILQKKEITIRDQEAPYLLRNLSDHTVAISSSTTLDCHANGVPEPQITWFK--NNHKIQQEPGIILGPGSSTLFIERVTEEDEGVYHCKATNQKGSVESSAYLTVQGT------SDKSNLELITLTCTCVAATLFWLLLTLFIRKMKRSSSEIKTDYLSIIMDPDEVPLDEQCERLPYDASKWEFARERLKLGKSLGRGAFGKVVQASAFGI------KKSPTCR----------------------------------TVAVKMLKEGATASEYKALMTELKILTHIGHHLNVVNLLGACTKQGGPLMVIVEYCKYGNLSNYLKSKRDLFFLNKDAALHMEPKKEKMEPGLEQGKKPRLDSVTSSESFASSGFQEDKSLSDVEEEEDSDGFYKEPITMEDLISYSFQVARGMEFLSSRKCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRKGDTRLPLKWMAPESIFDKIYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLREGMRMRAPEYSTPEIYQIMLDCWHRDPKERPRFAELVEKLGDLLQANV 1162 The following BLAST results are available for this feature:
BLAST of TCONS_00054846 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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