TCONS_00054887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054887
Unique NameTCONS_00054887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054887 ID=TCONS_00054887|Name=TCONS_00054887|organism=Clytia hemisphaerica|type=transcript|length=420bp
aaaagaaataaaaaaatattttaacaaataaGAAATCATGGAATTGGTGG
TTCCTCCATCCAAAGGATtgttggtacccgagaagacgCCACCTTTTAAG
TTTGGATGGAATTGAATGAACCATTCGATTTTTAGTTTTTGTAActtcat
cgattatgacgtactaatcagtttttgcggtttttcgcgaaaatgagcCA
AAAAACAATTGGGTTACACATCAGGCTAGAAACTatatcatagtaccctt
catgttcagtcatatttgtttggtcattttcaatCGACTagtgcgatcta
aaaattatggtaattttaagacatgccataaatTAACCGAGTTATTATGA
ACCAAAAGGTCGAAAAGATCGTGAATATCAAAAAGTTGCAAAAAACTTGG
TATACATTGCTGGATTTTAG
Run BLAST on NCBI

transcript from alignment at scaffold_245:896540..896959

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054887 ID=TCONS_00054887|Name=TCONS_00054887|organism=Clytia hemisphaerica|type=transcript|length=420bp|location=Sequence derived from alignment at scaffold_245:896540..896959 (Clytia hemisphaerica)
CTAAAATCCAGCAATGTATACCAAGTTTTTTGCAACTTTTTGATATTCAC
GATCTTTTCGACCTTTTGGTTCATAATAACTCGGTTAatttatggcatgt
cttaaaattaccataatttttagatcgcactAGTCGattgaaaatgacca
aacaaatatgactgaacatgaagggtactatgatatAGTTTCTAGCCTGA
TGTGTAACCCAATTGTTTTTTGgctcattttcgcgaaaaaccgcaaaaac
tgattagtacgtcataatcgatgaagTTACAAAAACTAAAAATCGAATGG
TTCATTCAATTCCATCCAAACTTAAAAGGTGGcgtcttctcgggtaccaa
caATCCTTTGGATGGAGGAACCACCAATTCCATGATTTCttatttgttaa
aatatttttttatttctttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034585XLOC_034585Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054887-exon-scaffold_245-1491911889:896540..896959TCONS_00054887-exon-scaffold_245-1491911889:896540..896959Clytia hemisphaericaexon
TCONS_00054887-exon-scaffold_245-1510915933:896540..896959TCONS_00054887-exon-scaffold_245-1510915933:896540..896959Clytia hemisphaericaexon
TCONS_00054887-exon-scaffold_245-1575043694:896540..896959TCONS_00054887-exon-scaffold_245-1575043694:896540..896959Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:896540..896959 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.35397	2.13153	0.380756	0.37251	0	0.196279	0.864687	1.21426	0.305519	0.175505	0.736532	0.335943	0.23684	0.348395	0.190952	0.512302	1.09568	0.517497	0.893688	0.187036	0.162568	0.237885	0	0.175271	0.902628	2.09449	0.461109	0	0.186623	0.619986
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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