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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055226 ID=TCONS_00055226|Name=TCONS_00055226|organism=Clytia hemisphaerica|type=transcript|length=1004bp
TATTTAATaagagaaaaagttttatttttgataaaaattatgtcataaac
tgaatgaaaaaaaactacTCCTGCATAATTAGTAGTTCATGGtttctttt
gaagtttttctaaaaaataaccTCTAACTAACTGTATACTTCATACCAAT
GTGACAAACTATCTGTAAAAAAAGCCAGTTttttacaaatcaaaaaaatg
aaagtcaTAATATATTTCATATAATATTCAAATTCACCGTAAAATACTTT
GGTTCCGTACTGTAGCCCATAAATCTCGATTTGCTTTCAGTCcaacacaa
aaattaaaatacaatGGATTGCCAGAAGCTTAGAAATAAGAACGAGACAT
TAGCACAATCTTCTTGGAAGTGTCATTTTACTGAAGAATTAACAGGCTTA
AGAGAGAAGATTCCAAAGTgtgataaaaagtaaaaatgattTGAATAACT
TTTTGGAGATAATTCCATTTTCCACTCCATAGAGGGATTGATGGATCTCc
attgaagtcaatctgaaTACATGATCGATTTCCAAGACGGTACTGTATGA
TTCATCCAGCATTGTGTAATGACCAGGACTACAACGGTACGACATGTAAT
CAACCAGTGTAATGCTTGTCCAAGACGGTACAACGGTATGGTTCATCCAC
AAGATTGTGACAAAATGATCAGAACTTTAATCCTATAATATTCTACATGT
AGTCAACCAGTGTAATGTTTGTCTATTGTCTGTTTCTTTTATACTATTTA
CAAAATATCCACAATAAATTTGTGAATCGACTTGTTGTTGTTACAAACGA
CAAGTTTCGATATTCATTTTATTCAGTTACGAGGTTACAAGGCTCTGGTA
ATCTGCTCCCTTCTTGCTTACGAAGGACTTTTTACATTTTCGAGGTTTTT
CGAGGATTTTTCGAGGTTTTGTTCAACCGTCAGTAGCTTCGTTTTCAGTT
CTCGAGGAGGGTTGTTTTTGTTGCATGCAACTTCTAGCTACTGATTCGAA
CAGT Run BLAST on NCBI transcript from alignment at scaffold_251:370862..373749- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055226 ID=TCONS_00055226|Name=TCONS_00055226|organism=Clytia hemisphaerica|type=transcript|length=2888bp|location=Sequence derived from alignment at scaffold_251:370862..373749- (Clytia hemisphaerica)
TATTTAATAAGAGAAAAAGTTTTATTTTTGATAAAAATTATGTCATAAAC
TGAATGAAAAAAAACTACTCCTGCATAATTAGTAGTTCATGGTTTCTTTT
GAAGTTTTTCTAAAAAATAACCTCTAACTAACTGTATACTTCATACCAAT
GTGACAAACTATCTGTAAAAAAAGCCAGTTTTTTACAAATCAAAAAAATG
AAAGTCATAATATATTTCATATAATATTCAAATTCACCGTAAAATACTTT
GGTTCCGTACTGTAGCCCATAAATCTCGATTTGCTTTCAGTCCAACACAA
AAATTAAAATACAATGGATTGCCAGAAGCTTAGAAATAAGAACGAGACAT
TAGCACAATCTTCTTGGAAGTGTCATTTTACTGAAGAATTAACAGGCTTA
AGAGAGAAGATTCCAAAGTGTGATAAAAAGTAAAAATGATTTGAATAACT
TTTTGGAGATAATTCCATTTTCCACTCCATAGAGGGATTGATGGATCTCC
ATTGAAGTCAATCTGAATACATGATCGATTTCCAAGACGGTACTGTATGA
TTCATCCAGCATTGTGTAATGACCAGGACTACAACGGTACGACATGTAAT
CAACCAGTGTAATGCTTGTCCAAGACGGTACAACGGTATGGTTCATCCAC
AAGATTGTGACAAAATGATCAGAACTTTAATCCTATAATATTCTACATGT
AGTCAACCAGTGTAATGTTTGTCTATTGTCTGTTTCTTTTATACTATTTA
CAAAATATCCACAATAAATTTGTGAATCGACTTGTTGTTGTTACAAACGA
CAAGTTTCGATATTCATTTTATTCAGTTACGAGGTTACAAGGCTCTGGTA
ATCTGCTCCCTTCTTGTTTACGAAGGGCTTTTACATTTTTCCTTTTCGAG
GTTTTGTTCAACCGTCAGTAGCCTCGTTTTCAGTTCTCGAGGAGGGTTGT
TTTTGTTGCATGCAACTTCTAGCTACTGATTCGAACAGTCTGAAAGGAGA
ATACAATAAATTCATAATTAGCTGTGAGATTGAGAAGCTAACACATTTTG
ACAAACTTAGTTTTACAAAAAGATTGATTTCAAAAAGTGAACTTGATTCA
ACCAAAGTTGTAACAAGTTCAATAAAAGACCTCACAAACCTTGACAAAAT
TTCTTACATGGTATAATTTCAATATGTTTTTTCAGATCACTTACTCAAAA
GTTACAGAGGATTTAATTTATCTCAGCCAAAACCTATCCTCAAAATAAAT
ATCCATAAAATACTGGTATGGAATAAAGCCACTTACTTTTCAATTTCGTG
TGCGCAGTGTACGAAGTCGTGACTCCAGAACTTGTAATTGTGATTTTTGA
TCAACTCAATGAAGGTGATCAAGAGACCCCANTAAAAAAAGGTCCGAAAA
CTTTGCAAAAAAGCACCACCAAATTGAATGTTGAAACAAACTCACTAAAT
AAAAATAAAACAATATTGGATTGAGTAAAAATAGGTTTTGAAAGTTTTAC
TTACGCCTTTTTCATTGATTATTGAAAAGTGTATAAACCTTTTTTCTAGG
ATTCTGGTAGAAAACTATAGAACTTTCATTATGGGCTCTTGCAGAAAAAA
AATTGAATATTGGGGGTGGGGATATAACATTTTTTGAAAAATTACCTATC
GGAAATTGTGACTTTTGACCCCCCGAACATTCATTTTGTAAATTTTTCAC
TAACCCGGACAATATTTCCTATGTATCCTTCACCTCCCATGTGCGAAAAT
AATAACTGTCTGTTGAGGGCTTTGTGGGCGTTCTTCCTTCGGACCTAAAC
GGTCCCTGTACCAAGTTTCAGTCAAATGTTTAGGGCAGTCAAATGTCGAG
GGGAAGCGTTACTCTACTACTAAACAATGAAAAAGAAAGGAATATTTAAT
AAGAGAAAAAGTTTTATTTTTGATAAAAATTATGTCATAAACTGAATGAA
AAAAAACTACTCATGCATAATAGTAGCTCTTGGTTTCTTTTGAAGTTTTT
CTAAAAAATAACCTCTAACTAACTGCATACCAATATAACAATGTGACAAA
CTATCTGTAAAAAAAGCCAGTTTTTTACAAATCAAAAAAAAATGAAAGTC
ATAATATATTTCATATAATATTCAAATTCACCGTAAAATACTTTGGTTCC
GTACTGTAGCCCATAAAGCTCTATTTGCTTTCAGTCCAACACAAAAATTA
AAATGCAACTGATTGTAAGAAGCTTAGAAATAAGAACGAAACATTGGCAC
AATCTTCTTAGAAGTGTCATTTTACTGAATTAACAGGCTTAAGAGAGAAG
ATTCCAAAGTGTGATAAAAAGTAAAAATGATTTGAATAACTTTTGGAGAT
AATTCCATTTTCCACTCCATAGAGGGATTGATGAATCTCCATTGAAGTCA
ATCTGAATACATGATCGATTTCCAAGACGGTACGCTACGATTCCTCCAAC
ATTGTGTAATGACCAGGACTACAACGGTACGACATGTAATCAACCTGTGT
AATATTTGTCCAAGACGGTACAACGGTAGGGTTCATCCACAAGATTGTGT
CAAAATAATCAGAACTTCAATCCTATAATATTCTACATGTAGTCAACCAG
TGTAATGTTTGTCTATTGTCTGTTTCTTTTATACTATTTACAAAATATCC
ACAAGAAATTTGTGAATCGACTTGTTACTAACGACAAGTTTCGATATTTA
TTTCATTCAGTTACGAGGTTACAAGGCTCTGGTAATCTGCTCCCTTCTTG
CTTACGAAGGACTTTTTACATTTTCGAGGTTTTTCGAGGATTTTTCGAGG
TTTTGTTCAACCGTCAGTAGCTTCGTTTTCAGTTCTCGAGGAGGGTTGTT
TTTGTTGCATGCAACTTCTAGCTACTGATTCGAACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055226-exon-scaffold_251-1575043694:372909..373749 | TCONS_00055226-exon-scaffold_251-1575043694:372909..373749 | Clytia hemisphaerica | exon |
| TCONS_00055226-exon-scaffold_251-1575043694:370862..371024 | TCONS_00055226-exon-scaffold_251-1575043694:370862..371024 | Clytia hemisphaerica | exon |
| TCONS_00055226-exon-scaffold_251-1510915933:372909..373749 | TCONS_00055226-exon-scaffold_251-1510915933:372909..373749 | Clytia hemisphaerica | exon |
| TCONS_00055226-exon-scaffold_251-1510915933:370862..371024 | TCONS_00055226-exon-scaffold_251-1510915933:370862..371024 | Clytia hemisphaerica | exon |
| TCONS_00055226-exon-scaffold_251-1491911889:372909..373749 | TCONS_00055226-exon-scaffold_251-1491911889:372909..373749 | Clytia hemisphaerica | exon |
| TCONS_00055226-exon-scaffold_251-1491911889:370862..371024 | TCONS_00055226-exon-scaffold_251-1491911889:370862..371024 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:370862..373749 - |
Blast
The following BLAST results are available for this feature:
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