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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055302 ID=TCONS_00055302|Name=TCONS_00055302|organism=Clytia hemisphaerica|type=transcript|length=2230bp
TGAAAAAAAACTTCCGGGTCTCTATAATTTCGAATGTTTTTGTTCGAAAA
TCTAGTTAGATTCGAATGTTAGATTCGAACAAAAAGATTCGACAAGTTCC
CGCCGGAATTATGCACATCAAAATAAAGAAAACATTTTTCGATCCAAAGC
TTCAAAATAAATGCAGCAGCTTTTTCAGAGATGTGAAATTATTAAGCATT
ATACCAAGGAATTGATTATACACAGAAAAGGAAGATGTATTGTATTTTTT
CGATTGAGAAGAAATTCTTCATCATTGCGTTTCTCTATCAGATTAACACA
CTTTTCAATGTTTTTGTTTCGATGCATGGGTGAAACAACATTTTTGCAAC
AAAAACTAATTGGGGAACTTCTCGACTTTCATTCAACTATCGTCAAGCTG
TAAACGTGTCGAATTTTGGAAGTAAAAAGTGTTGATTGTGGAAGAATTGA
AGAAAAGTCAAAGACACAGTTTTGTAGAGGATTGGGAGAGACACGAGAGA
CCTTTTACAAAAATCTCTCGTTATATTCTTGACAAGTATTAAAGAATTTC
AAGTTTTTATACATGCATCGATAAAAAAAATTGTTTGGTCTTCACGAACA
AAAGTGCCGAAAACTGAATTTATTTGCTTTGTTTGGGTCGTGTCACGTGT
GTCGAGTAGTTTTGTAACaatttctttatatttcatcagatttaatttca
ctgactttttggaaagagtagaataagagctcataaaaaaaaagttttat
ttttacgtaTTCCAACTTTTTATTCCGCTAGTTCAGTTCtgttcggctgt
tttgttttgattttctcacaccGCTTACCTAAATGTTACCAAATTTATAT
TTGAAGTCGTCCTAAAGCCTcgtaacacccctgtctcattgcattctcga
taaattttccgatccaaagaggggttagccatttccaaactcctttccaa
tctcgagttatcaTGCCCAAAAATTAAGCCAAATTTAaaagtcctactca
agccttacaAACCCTCCTATCTCATTCCCCATTAAATTCCTGATAGAATG
AGGGGCCAACGACCTCCTAACTcctcttcaaactcgagatatcgcatgtt
ttctatttttatgacgtcatcaactgaaaatgcccaaatatttagccaaa
tttgaaagtccttttcaagccttataaatcctcccatcttattccccatA
AACTTCTCGAtctaatgaggggtcaacgacctctcaactcttcttcaaac
tcgagCTATCGCAtgttgaagtttttcccaaacccgtgacgtcattgggt
ccctttacccctaatgttgtcaacagTCAATTCGCAAATTTaggaatttt
tgcggtcaacaggtaccttatgccccaagggtccccaaaaaacaaaaaac
gtcaattttttccaagggaaagtgggtttttaaactTGCGTTTTTAAAAc
gctaattttcgcgaaattttcaaagttgaaacattccagaggctaaacac
agcggaatagcggctagacgaaaaaaaaaggtgaaaaaaaaACTGAATTT
CCATTTTTAGGGCATATCATTGAAATTTTGTGAATTTTGCTTACGCGCAT
GCGTTTGCCAAAAGAGTCGCACTCCGCTCGCTTACGCTCGCTCCGTGCGT
AATTAATTTTTTCTCATAGGACCTAGCTCTTCAATGATTTACCAGACCTT
TTGGAAAGGTTAAAAATACTCCTTTTTGTCAGCAACCCCAATTTTCAGTT
CTGGGCTCGAATTTATTTTAAGCATTTATTGAAATAGGGCTTACATTGCT
TGTAAGGTTGCTTATATAATTTTAGACAAATCTGAGGGTTGAGCCCTTAG
CAACTTGGTTGCTTATAAAAAAGTGTGGACTCACGTGTCTGGAGTCCAAG
AAGCAAGGATATTTTGATAAAATTTCATCTTGTCTGTCACTTTGTTTTCT
TTTTTCTTGGTTGAGTGCTACTATCCAGTCTTTTCTTGCCTGGAACTCCT
GATCAAGCAAATCCTTTATGGCTTCATAGTTTGGTTTCGGTTTTGAGGAT
AGCTGTTGAATGGATTTTAACAACTTCTCGTTTATTGCTGAAAGATAAAA
CATAATTCAGAATAAAACAGTCCTTTGGCCAATACATATAATTTGCCGAG
AATTAATTTTGGTGAACGACTAGAATATGGAAGAAAAGTGCAAATTTGGG
GAGAATAACTTTGATGTgagaaaaattggc Run BLAST on NCBI transcript from alignment at scaffold_252:471..2700 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055302 ID=TCONS_00055302|Name=TCONS_00055302|organism=Clytia hemisphaerica|type=transcript|length=2230bp|location=Sequence derived from alignment at scaffold_252:471..2700 (Clytia hemisphaerica)
gccaatttttctcACATCAAAGTTATTCTCCCCAAATTTGCACTTTTCTT
CCATATTCTAGTCGTTCACCAAAATTAATTCTCGGCAAATTATATGTATT
GGCCAAAGGACTGTTTTATTCTGAATTATGTTTTATCTTTCAGCAATAAA
CGAGAAGTTGTTAAAATCCATTCAACAGCTATCCTCAAAACCGAAACCAA
ACTATGAAGCCATAAAGGATTTGCTTGATCAGGAGTTCCAGGCAAGAAAA
GACTGGATAGTAGCACTCAACCAAGAAAAAAGAAAACAAAGTGACAGACA
AGATGAAATTTTATCAAAATATCCTTGCTTCTTGGACTCCAGACACGTGA
GTCCACACTTTTTTATAAGCAACCAAGTTGCTAAGGGCTCAACCCTCAGA
TTTGTCTAAAATTATATAAGCAACCTTACAAGCAATGTAAGCCCTATTTC
AATAAATGCTTAAAATAAATTCGAGCCCAGAACTGAAAATTGGGGTTGCT
GACAAAAAGGAGTATTTTTAACCTTTCCAAAAGGTCTGGTAAATCATTGA
AGAGCTAGGTCCTATGAGAAAAAATTAATTACGCACGGAGCGAGCGTAAG
CGAGCGGAGTGCGACTCTTTTGGCAAACGCATGCGCGTAAGCAAAATTCA
CAAAATTTCAATGATATGCCCTAAAAATGGAAATTCAGTttttttttcac
ctttttttttcgtctagccgctattccgctgtgtttagcctctggaatgt
ttcaactttgaaaatttcgcgaaaattagcgTTTTAAAAACGCAagttta
aaaacccactttcccttggaaaaaattgacgttttttgttttttggggac
ccttggggcataaggtacctgttgaccgcaaaaattcctAAATTTGCGAA
TTGActgttgacaacattaggggtaaagggacccaatgacgtcacgggtt
tgggaaaaacttcaacaTGCGATAGctcgagtttgaagaagagttgagag
gtcgttgacccctcattagaTCGAGAAGTTTatggggaataagatgggag
gatttataaggcttgaaaaggactttcaaatttggctaaatatttgggca
ttttcagttgatgacgtcataaaaatagaaaacatgcgatatctcgagtt
tgaagaggAGTTAGGAGGTCGTTGGCCCCTCATTCTATCAGGAATTTAAT
GGGGAATGAGATAGGAGGGTTtgtaaggcttgagtaggactttTAAATTT
GGCTTAATTTTTGGGCAtgataactcgagattggaaaggagtttggaaat
ggctaacccctctttggatcggaaaatttatcgagaatgcaatgagacag
gggtgttacgAGGCTTTAGGACGACTTCAAATATAAATTTGGTAACATTT
AGGTAAGCggtgtgagaaaatcaaaacaaaacagccgaacaGAACTGAAC
TAGCGGAATAAAAAGTTGGAAtacgtaaaaataaaactttttttttatga
gctcttattctactctttccaaaaagtcagtgaaattaaatctgatgaaa
tataaagaaattGTTACAAAACTACTCGACACACGTGACACGACCCAAAC
AAAGCAAATAAATTCAGTTTTCGGCACTTTTGTTCGTGAAGACCAAACAA
TTTTTTTTATCGATGCATGTATAAAAACTTGAAATTCTTTAATACTTGTC
AAGAATATAACGAGAGATTTTTGTAAAAGGTCTCTCGTGTCTCTCCCAAT
CCTCTACAAAACTGTGTCTTTGACTTTTCTTCAATTCTTCCACAATCAAC
ACTTTTTACTTCCAAAATTCGACACGTTTACAGCTTGACGATAGTTGAAT
GAAAGTCGAGAAGTTCCCCAATTAGTTTTTGTTGCAAAAATGTTGTTTCA
CCCATGCATCGAAACAAAAACATTGAAAAGTGTGTTAATCTGATAGAGAA
ACGCAATGATGAAGAATTTCTTCTCAATCGAAAAAATACAATACATCTTC
CTTTTCTGTGTATAATCAATTCCTTGGTATAATGCTTAATAATTTCACAT
CTCTGAAAAAGCTGCTGCATTTATTTTGAAGCTTTGGATCGAAAAATGTT
TTCTTTATTTTGATGTGCATAATTCCGGCGGGAACTTGTCGAATCTTTTT
GTTCGAATCTAACATTCGAATCTAACTAGATTTTCGAACAAAAACATTCG
AAATTATAGAGACCCGGAAGTTTTTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055302-exon-scaffold_252-1491911889:471..2700 | TCONS_00055302-exon-scaffold_252-1491911889:471..2700 | Clytia hemisphaerica | exon |
| TCONS_00055302-exon-scaffold_252-1510915933:471..2700 | TCONS_00055302-exon-scaffold_252-1510915933:471..2700 | Clytia hemisphaerica | exon |
| TCONS_00055302-exon-scaffold_252-1575043694:471..2700 | TCONS_00055302-exon-scaffold_252-1575043694:471..2700 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_252 | supercontig | scaffold_252:471..2700 . |
Blast
The following BLAST results are available for this feature:
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