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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055602 ID=TCONS_00055602|Name=TCONS_00055602|organism=Clytia hemisphaerica|type=transcript|length=1116bp
TTGCAACCTTTCCTGGCTCAACATATGGGCCATTACACTATAGATGTCTT
GAAAGCTATAAAACTGTTTGTCTTCGAGAAAACAAAGGCAATTTTGATGC
TAAAATTAGGCTCACTCCTGAATGTAAAATAGAATGCTCCTGGTGGAGAG
ATAAGGTCATGGACATGAAGAAATCTATTGATCTACCCCCTTTTGATCAT
GAAATATATACTGATGCTTCAAAAACAGGGTGGGGTGCTGTATTTTCCAA
TAAAAAGTTATCTGGTCATTGGGATTTTGTTGAAGATGTACACATTAATG
TGTTAGAAATGCAGGCAATACTCAATACAATCACTAAGTTtacaaaatac
ataaaaaattcaCACATTAAAGTGTACTGTGATAATGTTACTGCTGTTTC
AACTATCAATAAAATGGGAACCAGTCACAGCACTAATTGTAATAAATTAG
GACAACTTATTTGGGAATACTGTATTGAAAATTGTATATGGATTACCAGT
ACATTCATTCCTGGAAAGGAGAATATTGAAGCTGATGCCCTGTCTAGAAA
GTTGTATAAAAATGCTGAAGCAATGCTTAATAGGGAGCTTTTCAATGAAG
GCATTAAACAGTTAAATTTCATGCCTGACTTGGACTGTTTTGCAAGCCCC
TCAAATGCCCAAATTGATAGATTTGTATGTAGATTCCCAAAGAAGAACTC
CTTTGCCACCGATGCTTTTACTGTCGACTGGTCAAAATATAAGTGTTATT
TATTTCCACCTTTTAGCCTAATCGGAAGAGTGCTACAAAAGATCAGAAGG
GACAAGCCAAGAAGAGTCTTAATGGTTGTTCCTCGTTGGCCAACTCAAGC
TTGGTATCCTATGCTAGAACGTCTTATGATTCAACCGCCGTTCAACATAA
AGCCCCAAAAAGCCAATATGTTTGTGGGAAAAGGTGTTCATCCGATGGCT
CACAAAATTCCTTTGATGATGTGTCTATTGTCAGGGCTGCATACATAGGT
ATGAAGATTTCACCCGAAGTGGTGGATGTAATCATGACAAGTTGGAGGAA
AAACACATTGGCCAAATATAAACCCATTCTTAGAAAGTGGTATACGTTTT
GCTTAGAAAATAAAGT Run BLAST on NCBI protein sequence of TCONS_00055602-protein >TCONS_00055602-protein ID=TCONS_00055602-protein|Name=TCONS_00055602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
ATFPGSTYGPLHYRCLESYKTVCLRENKGNFDAKIRLTPECKIECSWWRD
KVMDMKKSIDLPPFDHEIYTDASKTGWGAVFSNKKLSGHWDFVEDVHINV
LEMQAILNTITKFTKYIKNSHIKVYCDNVTAVSTINKMGTSHSTNCNKLG
QLIWEYCIENCIWITSTFIPGKENIEADALSRKLYKNAEAMLNRELFNEG
IKQLNFMPDLDCFASPSNAQIDRFVCRFPKKNSFATDAFTVDWSKYKCYL
FPPFSLIGRVLQKIRRDKPRRVLMVVPRWPTQAWYPMLERLMIQPPFNIK
PQKANMFVGKGVHPMAHKIPLMMCLLSGLHT Run BLAST on NCBI transcript from alignment at scaffold_253:347798..348913 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055602 ID=TCONS_00055602|Name=TCONS_00055602|organism=Clytia hemisphaerica|type=transcript|length=1116bp|location=Sequence derived from alignment at scaffold_253:347798..348913 (Clytia hemisphaerica)
ACTTTATTTTCTAAGCAAAACGTATACCACTTTCTAAGAATGGGTTTATA
TTTGGCCAATGTGTTTTTCCTCCAACTTGTCATGATTACATCCACCACTT
CGGGTGAAATCTTCATACCTATGTATGCAGCCCTGACAATAGACACATCA
TCAAAGGAATTTTGTGAGCCATCGGATGAACACCTTTTCCCACAAACATA
TTGGCTTTTTGGGGCTTTATGTTGAACGGCGGTTGAATCATAAGACGTTC
TAGCATAGGATACCAAGCTTGAGTTGGCCAACGAGGAACAACCATTAAGA
CTCTTCTTGGCTTGTCCCTTCTGATCTTTTGTAGCACTCTTCCGATTAGG
CTAAAAGGTGGAAATAAATAACACTTATATTTTGACCAGTCGACAGTAAA
AGCATCGGTGGCAAAGGAGTTCTTCTTTGGGAATCTACATACAAATCTAT
CAATTTGGGCATTTGAGGGGCTTGCAAAACAGTCCAAGTCAGGCATGAAA
TTTAACTGTTTAATGCCTTCATTGAAAAGCTCCCTATTAAGCATTGCTTC
AGCATTTTTATACAACTTTCTAGACAGGGCATCAGCTTCAATATTCTCCT
TTCCAGGAATGAATGTACTGGTAATCCATATACAATTTTCAATACAGTAT
TCCCAAATAAGTTGTCCTAATTTATTACAATTAGTGCTGTGACTGGTTCC
CATTTTATTGATAGTTGAAACAGCAGTAACATTATCACAGTACACTTTAA
TGTGtgaattttttatgtattttgtaAACTTAGTGATTGTATTGAGTATT
GCCTGCATTTCTAACACATTAATGTGTACATCTTCAACAAAATCCCAATG
ACCAGATAACTTTTTATTGGAAAATACAGCACCCCACCCTGTTTTTGAAG
CATCAGTATATATTTCATGATCAAAAGGGGGTAGATCAATAGATTTCTTC
ATGTCCATGACCTTATCTCTCCACCAGGAGCATTCTATTTTACATTCAGG
AGTGAGCCTAATTTTAGCATCAAAATTGCCTTTGTTTTCTCGAAGACAAA
CAGTTTTATAGCTTTCAAGACATCTATAGTGTAATGGCCCATATGTTGAG
CCAGGAAAGGTTGCAA Coding sequence (CDS) from alignment at scaffold_253:347798..348913 >TCONS_00055602 ID=TCONS_00055602|Name=TCONS_00055602|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_253:347798..348913 (Clytia hemisphaerica)
CTATGTATGCAGCCCTGACAATAGACACATCATCAAAGGAATTTTGTGAG
CCATCGGATGAACACCTTTTCCCACAAACATATTGGCTTTTTGGGGCTTT
ATGTTGAACGGCGGTTGAATCATAAGACGTTCTAGCATAGGATACCAAGC
TTGAGTTGGCCAACGAGGAACAACCATTAAGACTCTTCTTGGCTTGTCCC
TTCTGATCTTTTGTAGCACTCTTCCGATTAGGCTAAAAGGTGGAAATAAA
TAACACTTATATTTTGACCAGTCGACAGTAAAAGCATCGGTGGCAAAGGA
GTTCTTCTTTGGGAATCTACATACAAATCTATCAATTTGGGCATTTGAGG
GGCTTGCAAAACAGTCCAAGTCAGGCATGAAATTTAACTGTTTAATGCCT
TCATTGAAAAGCTCCCTATTAAGCATTGCTTCAGCATTTTTATACAACTT
TCTAGACAGGGCATCAGCTTCAATATTCTCCTTTCCAGGAATGAATGTAC
TGGTAATCCATATACAATTTTCAATACAGTATTCCCAAATAAGTTGTCCT
AATTTATTACAATTAGTGCTGTGACTGGTTCCCATTTTATTGATAGTTGA
AACAGCAGTAACATTATCACAGTACACTTTAATGTGtgaattttttatgt
attttgtaAACTTAGTGATTGTATTGAGTATTGCCTGCATTTCTAACACA
TTAATGTGTACATCTTCAACAAAATCCCAATGACCAGATAACTTTTTATT
GGAAAATACAGCACCCCACCCTGTTTTTGAAGCATCAGTATATATTTCAT
GATCAAAAGGGGGTAGATCAATAGATTTCTTCATGTCCATGACCTTATCT
CTCCACCAGGAGCATTCTATTTTACATTCAGGAGTGAGCCTAATTTTAGC
ATCAAAATTGCCTTTGTTTTCTCGAAGACAAACAGTTTTATAGCTTTCAA
GACATCTATAGTGTAATGGCCCATATGTTGAGCCAGGAAAGGTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055602-exon-scaffold_253-1491911889:347798..348913 | TCONS_00055602-exon-scaffold_253-1491911889:347798..348913 | Clytia hemisphaerica | exon |
| TCONS_00055602-exon-scaffold_253-1510915933:347798..348913 | TCONS_00055602-exon-scaffold_253-1510915933:347798..348913 | Clytia hemisphaerica | exon |
| TCONS_00055602-exon-scaffold_253-1575043694:347798..348913 | TCONS_00055602-exon-scaffold_253-1575043694:347798..348913 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:347798..348913 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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