TCONS_00055607 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055607
Unique NameTCONS_00055607
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055607 ID=TCONS_00055607|Name=TCONS_00055607|organism=Clytia hemisphaerica|type=transcript|length=237bp
TTCAAGATGATCAATGTAATACGAAACCCACGTGATGTTTGTGTATCATT
TCTCAACCATCATGTTCTGACAGAAAACTACACTGGTGATTTACAAACCA
TCGCAGAGATTATGTTACAGGATGTAGGACCTGTCAGTGCACCCTTCTTT
ACACATATCCTGAGCTACTGGAACCAACGGGAAAATCCAAATCTTTTGAT
TGTTCACTATGAAGAGATGCAAAAAGATATAACTGGT
Run BLAST on NCBI

transcript from alignment at scaffold_253:450876..451112

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055607 ID=TCONS_00055607|Name=TCONS_00055607|organism=Clytia hemisphaerica|type=transcript|length=237bp|location=Sequence derived from alignment at scaffold_253:450876..451112 (Clytia hemisphaerica)
ACCAGTTATATCTTTTTGCATCTCTTCATAGTGAACAATCAAAAGATTTG
GATTTTCCCGTTGGTTCCAGTAGCTCAGGATATGTGTAAAGAAGGGTGCA
CTGACAGGTCCTACATCCTGTAACATAATCTCTGCGATGGTTTGTAAATC
ACCAGTGTAGTTTTCTGTCAGAACATGATGGTTGAGAAATGATACACAAA
CATCACGTGGGTTTCGTATTACATTGATCATCTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034979XLOC_034979Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055607-exon-scaffold_253-1491911889:450876..451112TCONS_00055607-exon-scaffold_253-1491911889:450876..451112Clytia hemisphaericaexon
TCONS_00055607-exon-scaffold_253-1510915933:450876..451112TCONS_00055607-exon-scaffold_253-1510915933:450876..451112Clytia hemisphaericaexon
TCONS_00055607-exon-scaffold_253-1575043694:450876..451112TCONS_00055607-exon-scaffold_253-1575043694:450876..451112Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:450876..451112 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.2164	22.2239	14.0726	21.7982	10.1837	9.42118	17.2522	24.1363	81.5307	70.714	52.5662	53.447	43.0457	48.21	67.8974	73.3832	60.6511	62.5886	10.5132	40.0843	26.0334	19.9335	45.8029	42.5662	21.2829	24.6627	58.2567	33.7534	44.0185	46.4655
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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