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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055616 ID=TCONS_00055616|Name=TCONS_00055616|organism=Clytia hemisphaerica|type=transcript|length=851bp
TCAACTTATTGAGTTTGTTTTAGAAAGCACTTTGCTCTTGACTACTATAC
ATATAACATAAGACACTATAAATTATCAGTCGAAACATCAGAACAGCATG
GAGGCAAATGAAGCTCAAGCAAAAGATAAGGAGCTTTGTGAGAAATATAG
CATCATTCGTCCAACATTAAACGAAGAATTGTTACCAGATCTGAAGATAT
GTGTTGAAGAACGAATGAAAACAACGAAATGGAAAGCAGAATGGATCCAC
GACGGTCTGTTGGCTCGTTTCTTGAAAGCCTTTCAAACAGTGGAGGGAAC
CATGCAAGCGTTGGAAGATTATTGTGAGTGGAGACTGAAAGATGACGTTG
ATACGACTGCCGCATTGACACGGGACAATGATGAAGATATAAAACGACAA
GATGCAGTTGGTAGAGCAACTGTTTTCGAGACTTTTTTTGATCGATGTGG
ACGACCAATCATGTTAGTACATGTTAAAAACCATGACCGTTACCATGGTA
ACTATCCCAGCTTGCTTCGTTACGTTATTTGGCTGATGGAGGTGACTGCA
CAAAAAGCTGAAGAGCTGAGCGCAGATAAACGTTTCAACTTGATCTTCGA
TCTTAACGGTTTTAGTATGAGAAATATGGATTTTAAGtatgtgaaaaact
ttttgaacatGCTTCGATACTACTACCCAGAACGTATCGCACAAGCTTTC
ATTATTAACTACCCTTGGGTGTTTTGGGGATGTTGGGCTATCATTAAACA
CTGGATGAATGACGTCACACAAAGCAAGTTTATTTTCGCTGCTTATGATC
AGCTGAATGATTTTATGGACTTGGAAGAGATGCCATTGAAagtgttttga
g Run BLAST on NCBI protein sequence of SEC14 family domain containing protein >TCONS_00055616-protein ID=TCONS_00055616-protein|Name=SEC14 family domain containing protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MEANEAQAKDKELCEKYSIIRPTLNEELLPDLKICVEERMKTTKWKAEWI
HDGLLARFLKAFQTVEGTMQALEDYCEWRLKDDVDTTAALTRDNDEDIKR
QDAVGRATVFETFFDRCGRPIMLVHVKNHDRYHGNYPSLLRYVIWLMEVT
AQKAEELSADKRFNLIFDLNGFSMRNMDFKYVKNFLNMLRYYYPERIAQA
FIINYPWVFWGCWAIIKHWMNDVTQSKFIFAAYDQLNDFMDLEEMPLKVF Run BLAST on NCBI transcript from alignment at scaffold_253:551997..552847 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055616 ID=TCONS_00055616|Name=TCONS_00055616|organism=Clytia hemisphaerica|type=transcript|length=851bp|location=Sequence derived from alignment at scaffold_253:551997..552847 (Clytia hemisphaerica)
ctcaaaacactTTCAATGGCATCTCTTCCAAGTCCATAAAATCATTCAGC
TGATCATAAGCAGCGAAAATAAACTTGCTTTGTGTGACGTCATTCATCCA
GTGTTTAATGATAGCCCAACATCCCCAAAACACCCAAGGGTAGTTAATAA
TGAAAGCTTGTGCGATACGTTCTGGGTAGTAGTATCGAAGCatgttcaaa
aagtttttcacataCTTAAAATCCATATTTCTCATACTAAAACCGTTAAG
ATCGAAGATCAAGTTGAAACGTTTATCTGCGCTCAGCTCTTCAGCTTTTT
GTGCAGTCACCTCCATCAGCCAAATAACGTAACGAAGCAAGCTGGGATAG
TTACCATGGTAACGGTCATGGTTTTTAACATGTACTAACATGATTGGTCG
TCCACATCGATCAAAAAAAGTCTCGAAAACAGTTGCTCTACCAACTGCAT
CTTGTCGTTTTATATCTTCATCATTGTCCCGTGTCAATGCGGCAGTCGTA
TCAACGTCATCTTTCAGTCTCCACTCACAATAATCTTCCAACGCTTGCAT
GGTTCCCTCCACTGTTTGAAAGGCTTTCAAGAAACGAGCCAACAGACCGT
CGTGGATCCATTCTGCTTTCCATTTCGTTGTTTTCATTCGTTCTTCAACA
CATATCTTCAGATCTGGTAACAATTCTTCGTTTAATGTTGGACGAATGAT
GCTATATTTCTCACAAAGCTCCTTATCTTTTGCTTGAGCTTCATTTGCCT
CCATGCTGTTCTGATGTTTCGACTGATAATTTATAGTGTCTTATGTTATA
TGTATAGTAGTCAAGAGCAAAGTGCTTTCTAAAACAAACTCAATAAGTTG
A Coding sequence (CDS) from alignment at scaffold_253:551997..552847 >TCONS_00055616 ID=TCONS_00055616|Name=TCONS_00055616|organism=Clytia hemisphaerica|type=CDS|length=753bp|location=Sequence derived from alignment at scaffold_253:551997..552847 (Clytia hemisphaerica)
tcaaaacactTTCAATGGCATCTCTTCCAAGTCCATAAAATCATTCAGCT
GATCATAAGCAGCGAAAATAAACTTGCTTTGTGTGACGTCATTCATCCAG
TGTTTAATGATAGCCCAACATCCCCAAAACACCCAAGGGTAGTTAATAAT
GAAAGCTTGTGCGATACGTTCTGGGTAGTAGTATCGAAGCatgttcaaaa
agtttttcacataCTTAAAATCCATATTTCTCATACTAAAACCGTTAAGA
TCGAAGATCAAGTTGAAACGTTTATCTGCGCTCAGCTCTTCAGCTTTTTG
TGCAGTCACCTCCATCAGCCAAATAACGTAACGAAGCAAGCTGGGATAGT
TACCATGGTAACGGTCATGGTTTTTAACATGTACTAACATGATTGGTCGT
CCACATCGATCAAAAAAAGTCTCGAAAACAGTTGCTCTACCAACTGCATC
TTGTCGTTTTATATCTTCATCATTGTCCCGTGTCAATGCGGCAGTCGTAT
CAACGTCATCTTTCAGTCTCCACTCACAATAATCTTCCAACGCTTGCATG
GTTCCCTCCACTGTTTGAAAGGCTTTCAAGAAACGAGCCAACAGACCGTC
GTGGATCCATTCTGCTTTCCATTTCGTTGTTTTCATTCGTTCTTCAACAC
ATATCTTCAGATCTGGTAACAATTCTTCGTTTAATGTTGGACGAATGATG
CTATATTTCTCACAAAGCTCCTTATCTTTTGCTTGAGCTTCATTTGCCTC
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055616-exon-scaffold_253-1491911889:551997..552847 | TCONS_00055616-exon-scaffold_253-1491911889:551997..552847 | Clytia hemisphaerica | exon |
| TCONS_00055616-exon-scaffold_253-1510915933:551997..552847 | TCONS_00055616-exon-scaffold_253-1510915933:551997..552847 | Clytia hemisphaerica | exon |
| TCONS_00055616-exon-scaffold_253-1575043694:551997..552847 | TCONS_00055616-exon-scaffold_253-1575043694:551997..552847 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:551997..552847 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001251 | CRAL-TRIO_dom |
Blast
The following BLAST results are available for this feature:
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