TCONS_00055675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055675
Unique NameTCONS_00055675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1336

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055675 ID=TCONS_00055675|Name=TCONS_00055675|organism=Clytia hemisphaerica|type=transcript|length=1336bp
tgcacctttgtatcaaaaatcacaaaattttcctatgattcaatcccgag
aaaagttggtaacagatgaacggacgaacggacaaacacaggttaaAAGT
TATAAACTAAATTCATAAATGGGTATATCATATAAATCTGCATAAGTAAG
TTTTATTCCTTTTTGTGAATTCAATTGTGATGTCTTGAGAGATGTTTTTT
GCATCTAAACGTTTTACCACATTTTTCCTCCATCATGAGTTCTCGTATAA
GTTTTCAAGGTACCCTTTTGCATAAAGCATTTACCACACTATTGACattc
aaattgtttttctcCTGTGTGAGTTCTCAAATGTCTTTTCAAGGTACCCT
TTNCCTCCATCATTTACCACACTCTTGacattcaaattgttttttcctGT
GTGAGTTCTCAAATGTCTTTTCAAGGTACCCTTTTGCATAAAGCATTTGC
CACACTCTTGACATTCAAATTGTCTTTCTCCTGTGTGAGTTCTCAAATGT
CTTTTCAAGGTACCCTTTTGCATAAAGCATTTACCACACTCTTGGCattc
aaattgtttttctcCTGTGTGAGTTCTCAAATGTCTTTTCAGGCTGCCTT
TTTGTGTAAAGAtcttaccacattcttcacatttaaaattattttcacct
gCATGAATTTTCAAATGGATAGCCAAGCTGCCTTTTTGTCTGAAGTGTAT
ACCACATTCTTCACACTTGAAAGGTTTTTCTCCAGTATGagttttgaaat
gttctttcaaGTTCTTTTTTTGGGTAAAGagtttaccacattcttcacac
TTAAAGGGCTTTTCACCTGAATGAGCTCTCAAATGTGCTTTCAAGTTGCT
ATTTTGAGTAAACTgcttaccacattcttcacatttAAAACCCATGACTT
CACCATGTACTTTTTGTATATGCTCATTAAGGAACTCCTTTTTGTCGAAA
CAGAAACTACACTTTAtgcatttgaaataattttcatttttcctttctTC
TTCATCTATAACAATTGAACTTGCCatttccattaaattttcagTATTTG
ACAAGTCTTCTTCCGTAGATATTGACAGATTATCGGAGGTTTCCATGGTT
AAAACTTCATTATCTTTAGAAATTAAATCAGGGATCAAATCAATCTGCAG
ACTGGTCATATCTGTTTTTTCCATATCTAAAGTGGTCCTAACAAGATCAT
TGAAATCCAAAGtctggtcttcaaaatcaagTTCTCTCCCATTGATTGGT
TCATTCCATGTAAAACTGAAATTATTTTCCATGTTACAGTCTGtgacttc
attttcaatctcCATTGTCAAGACTGGGAgttttta
Run BLAST on NCBI

transcript from alignment at scaffold_256:23158..24755+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055675 ID=TCONS_00055675|Name=TCONS_00055675|organism=Clytia hemisphaerica|type=transcript|length=1598bp|location=Sequence derived from alignment at scaffold_256:23158..24755+ (Clytia hemisphaerica)
tgcacctttgtatcaaaaatcacaaaattttcctatgattcaatcccgag aaaagttggtaacagatgaacggacgaacggacaaacacaggttaaAAGT TATAAACTAAATTCATAAATGGGTATATCATATAAATCTGCATAAGTAAG TTTTATTCCTTTTTGTGAATTCAATTGTGATGTCTTGAGAGATGTTTTTT GCATCTAAACGTTTTACCACATTTTTCCTCCATCATGAGTTCTCGTATAA GTTTTCAAGGTACCCTTTTGCATAAAGCATTTACCACACTATTGACattc aaattgtttttctcCTGTGTGAGTTCTCAAATGTCTTTTCAAGGTACCCT TTNCCTCCATCATTTACCACACTCTTGacattcaaattgttttttcctGT GTGAGTTCTCAAATGTCTTTTCAAGGTACCCTTTTGCATAAAGCATTTGC CACACTCTTGACATTCAAATTNGaccccgagaaaagttggtaacagaacG GACAAACAGACAAACACAGGTTACAATTTATAAACTAAATTCATAAATGG GTATATCATATAAATCTGCATAAGTAAGTTTTATTCCTTTTTGTGAATTC AATTGTGATGTCTTGAGAGATGTTTTTTGCATCTAAAAGTTTTACCACAT TTTTCCTCCATCATGAGTTCTCGTATGAGTTTTCAAGGTACCCTTTTGCA TAAAGCATTTACCACACTATTGACATTCAAATTGTCTTTCTCCTGTGTGA GTTCTCAAATGTCTTTTCAAGGTACCCTTTTGCATAAAGCATTTACCACA CTCTTGGCattcaaattgtttttctcCTGTGTGAGTTCTCAAATGTCTTT TCAGGCTGCCTTTTTGTGTAAAGAtcttaccacattcttcacatttaaaa ttattttcacctgCATGAATTTTCAAATGGATAGCCAAGCTGCCTTTTTG TCTGAAGTGTATACCACATTCTTCACACTTGAAAGGTTTTTCTCCAGTAT GagttttgaaatgttctttcaaGTTCTTTTTTTGGGTAAAGagtttacca cattcttcacacTTAAAGGGCTTTTCACCTGAATGAGCTCTCAAATGTGC TTTCAAGTTGCTATTTTGAGTAAACTgcttaccacattcttcacatttAA AACCCATGACTTCACCATGTACTTTTTGTATATGCTCATTAAGGAACTCC TTTTTGTCGAAACAGAAACTACACTTTAtgcatttgaaataattttcatt tttcctttctTCTTCATCTATAACAATTGAACTTGCCatttccattaaat tttcagTATTTGACAAGTCTTCTTCCGTAGATATTGACAGATTATCGGAG GTTTCCATGGTTAAAACTTCATTATCTTTAGAAATTAAATCAGGGATCAA ATCAATCTGCAGACTGGTCATATCTGTTTTTTCCATATCTAAAGTGGTCC TAACAAGATCATTGAAATCCAAAGtctggtcttcaaaatcaagTTCTCTC CCATTGATTGGTTCATTCCATGTAAAACTGAAATTATTTTCCATGTTACA GTCTGtgacttcattttcaatctcCATTGTCAAGACTGGGAgttttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035035XLOC_035035Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055675-exon-scaffold_256-1491911889:23158..23619TCONS_00055675-exon-scaffold_256-1491911889:23158..23619Clytia hemisphaericaexon
TCONS_00055675-exon-scaffold_256-1510915933:23158..23619TCONS_00055675-exon-scaffold_256-1510915933:23158..23619Clytia hemisphaericaexon
TCONS_00055675-exon-scaffold_256-1575043694:23158..23619TCONS_00055675-exon-scaffold_256-1575043694:23158..23619Clytia hemisphaericaexon
TCONS_00055675-exon-scaffold_256-1491911889:23882..24755TCONS_00055675-exon-scaffold_256-1491911889:23882..24755Clytia hemisphaericaexon
TCONS_00055675-exon-scaffold_256-1510915933:23882..24755TCONS_00055675-exon-scaffold_256-1510915933:23882..24755Clytia hemisphaericaexon
TCONS_00055675-exon-scaffold_256-1575043694:23882..24755TCONS_00055675-exon-scaffold_256-1575043694:23882..24755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:23158..24755 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.528957 1.1135 0.103166 0.53383 0.119759 0.134468 0 0 0 0.190285 0 0.0532101 0 0 0 0.126506 0.271926 0.292396 0 0 0.438073 0.431649 0.851458 0 0.000254787 0.688049 0 0.132818 0.243585 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
BLAST of TCONS_00055675 vs. Swiss-Prot (Human)
Match: ZN782 (Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 2.505e-62
Identity = 110/237 (46.41%), Postives = 149/237 (62.87%), Query Frame = -1
Query:  311 SSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQFECQECGKCFMQKGTLKRHLRTHTGKNNLNVKSVVNDGGKGYLEKTFENSHRR 1021
            S + I +     E  F+C +C   F+ K  L  H Q+ H     F+C ECGK F+  S L+ H R H+GE+P+KC+ECGK F  K  L++H +THTGEKP+KC +CG  F QK  L  H +IH GE  +KC  CG+ F+QK +L+ H RTHTGEK ++C+ECGK F QK  L+ H RTHTGE+ +EC ECGK F +K  L++H RTHTG+   N     N  G+ + +K+    H+R
Sbjct:  435 SGLRIHQRTHTGEKPFECHECGKSFNYKSILIVH-QRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYN----CNQCGEAFSQKSNLRVHQR 666          

HSP 2 Score: 209.149 bits (531), Expect = 1.083e-59
Identity = 100/209 (47.85%), Postives = 133/209 (63.64%), Query Frame = -1
Query:  395 SSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQFECQECGKCFMQKGTLKRHLRTHTG 1021
            S +++ +     E  F+C +C   F     L  H ++ H     +KC+ECGK F   S L+ H R H+GEKP+KC +CGK F QK  L+ H + HTGEKP+KC  CG  F QK +L +H + H GE  ++CEECGK F QK +L+ H RTHTGEK +EC ECGK F +K  L++H RTHTGE+ + C +CG+ F QK  L+ H RTHTG
Sbjct:  463 SILIVHQRTHTGEKPFECNECGKSFSHMSGLRNH-RRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTG 670          

HSP 3 Score: 205.297 bits (521), Expect = 3.176e-58
Identity = 96/197 (48.73%), Postives = 131/197 (66.50%), Query Frame = -1
Query:  395 ENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQFECQECGKCFMQKGTLKRHLRTHTG 985
            E  +KC +C   F  K  L +H  + H     +KC +CGK F Q S L+ H R H+GEKP+KC  CG+ F+QK NL+ H +THTGEKP++CEECG  FRQK +L  H + H GE  ++C ECGK F++K  L++H RTHTGEK + C +CG+ F QK  L+ H RTHTGE+ ++C +CG+ F QK +L+ H + H G
Sbjct:  503 ERPYKCDECGKAFKLKSGLRKH-HRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEKPYKCDKCGRTFSQKSSLREHQKAHPG 698          

HSP 4 Score: 196.052 bits (497), Expect = 6.379e-55
Identity = 102/239 (42.68%), Postives = 140/239 (58.58%), Query Frame = -1
Query:  311 MASSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQFECQECGKCFMQKGTLKRHLRTHTGKNNLNVKSVVNDGGKGYLEKTFENSHRR 1027
            M S ++  ++    E  ++C +C   F +K  L +H Q+ H     +KC+ C K F+  S L+ H R H+GEKPF+C ECGK F  K  L  H +THTGEKPF+C ECG  F     L  H + H GE  +KC+ECGK F  K  L++H RTHTGEK ++C +CGK F QK  L+ H R HTGE+ ++C  CG+ F QK  L+ H RTHTG+     +      GK + +K+    H+R
Sbjct:  377 MNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKH-QRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEEC----GKTFRQKSNLRGHQR 610          

HSP 5 Score: 189.504 bits (480), Expect = 1.106e-52
Identity = 102/237 (43.04%), Postives = 137/237 (57.81%), Query Frame = -1
Query:  311 SSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQFECQECGKCFMQKGTLKRHLRTHTGKNNLNVKSVVNDGGKGYLEKTFENSHRR 1021
            S++ + +     + Y     C+  F  +   + H QKVH     ++  ECGK  + NS+L    ++H+GEKP++C ECGK F++K  L++H +THTGEKP+KC+ C   F  K  L IH + H GE  F+C ECGK F  K  L  H RTHTGEK FEC ECGK F     L+ H RTHTGER ++C ECGK F  K  L++H RTHTG+         N  GK + +K+    H R
Sbjct:  323 STLPVHQRTHATDKYSDYHPCTETFSYQSTFSVH-QKVHIRAKPYEYNECGKSCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYK----CNQCGKAFGQKSQLRGHHR 554          

HSP 6 Score: 171.4 bits (433), Expect = 1.956e-46
Identity = 80/170 (47.06%), Postives = 112/170 (65.88%), Query Frame = -1
Query:  476 ENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGE 985
            E  +KC +C   F +K  L  H  ++H     +KC  CG+ F+Q SNL+ H R H+GEKP++CEECGK F QK NL+ H +THTGEKP++C ECG  F +K  L  H + H GE  + C +CG+ F+QK +L+ H RTHTGEK ++C +CG+ F QK +L+ H + H G+
Sbjct:  531 EKPYKCNQCGKAFGQKSQLRGH-HRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEKPYKCDKCGRTFSQKSSLREHQKAHPGD 699          

HSP 7 Score: 142.51 bits (358), Expect = 1.906e-36
Identity = 85/213 (39.91%), Postives = 112/213 (52.58%), Query Frame = -1
Query:  311 FDKKEFLNEHIQKVHGEVMGFKCEECGKQFTQNSNLKAHLRAHSGEKPFKCEECGKLFTQKKNLKEHFKTHTGEKPFKCEECGIHFRQKGSLAIHLKIHAGENNFKCEECGKIFTQKGSLKRHLRTHTGEKQFECQECGKCFMQKGTLKRHLRTHTGERQFECQECGKCFMQKGTLKRHLRTHTGKNNLNVKSVVNDGGKGYLEKTFENSHRR 949
            F +K  + EH  +VH   +G K  E GK F +NS L  H R H+ +K      C + F+ +     H K H   KP++  ECG        L    K H GE  ++C ECGK F++K  L++H RTHTGEK ++C  C K F  K  L+ H RTHTGE+ FEC ECGK F  K  L  H RTHTG+         N+ GK +   +   +HRR
Sbjct:  294 FSQKSHIREH-HRVH---IGVKPFEYGKSFNRNSTLPVHQRTHATDKYSDYHPCTETFSYQSTFSVHQKVHIRAKPYEYNECGKSCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFE----CNECGKSFSHMSGLRNHRR 498          
The following BLAST results are available for this feature:
BLAST of TCONS_00055675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN7822.505e-6246.41Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 ... [more]
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