TCONS_00055742 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055742
Unique NameTCONS_00055742
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length590

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055742 ID=TCONS_00055742|Name=TCONS_00055742|organism=Clytia hemisphaerica|type=transcript|length=590bp
ctccgaaaacaattaaaatgctagatcctatccatcggcacgaaatttaa
aaagtcaaatttttgcttcactttttttttgctggagaaagcttaaagtt
gcctatctagcccttcgggctttacaaatATCTGTGACTGTTCCCTCCGT
CGCTAAAAAAGGATTTAACTGGTGACTCATCTGCAGTTcacaaaaattct
ttgaatgCTGAAATTAAATGAATGGACAAAGTCCAAGACTCTGTCAGAAA
TAATACAACAGTTGAAAAACTCTTGAACCTATCATGGGCAGCTTACTTTG
CCCGCAGAGAAGAACAAGTCTTGAAGGAAACAGTGACGAGTCAAATCTTA
CCAGTATTCATTGAAGAAGCCGCAACACCCTCAATGGTGAAACATTGCCT
GACCGTTATCTTGAAGTGTCATGAATATACGAATCCTGGTGAAGTCAGAT
GGGTTACAGCGGGTGCGCTACATATCGAGAAAGCAGCGTGGACGTGTGTT
GGGCAAGTCGAAGACGGATCTGGGACTATCAGTCTCATGGCTGATGCCGA
CGTCTCAACAATTGGTGTTGCCGAATCCTGTCTTCATTGC
Run BLAST on NCBI

protein sequence of TCONS_00055742-protein

>TCONS_00055742-protein ID=TCONS_00055742-protein|Name=TCONS_00055742-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MDKVQDSVRNNTTVEKLLNLSWAAYFARREEQVLKETVTSQILPVFIEEA
ATPSMVKHCLTVILKCHEYTNPGEVRWVTAGALHIEKAAWTCVGQVEDGS
GTISLMADADVSTIGVAESCLHC
Run BLAST on NCBI

transcript from alignment at scaffold_258:8378..8967

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055742 ID=TCONS_00055742|Name=TCONS_00055742|organism=Clytia hemisphaerica|type=transcript|length=590bp|location=Sequence derived from alignment at scaffold_258:8378..8967 (Clytia hemisphaerica)
GCAATGAAGACAGGATTCGGCAACACCAATTGTTGAGACGTCGGCATCAG
CCATGAGACTGATAGTCCCAGATCCGTCTTCGACTTGCCCAACACACGTC
CACGCTGCTTTCTCGATATGTAGCGCACCCGCTGTAACCCATCTGACTTC
ACCAGGATTCGTATATTCATGACACTTCAAGATAACGGTCAGGCAATGTT
TCACCATTGAGGGTGTTGCGGCTTCTTCAATGAATACTGGTAAGATTTGA
CTCGTCACTGTTTCCTTCAAGACTTGTTCTTCTCTGCGGGCAAAGTAAGC
TGCCCATGATAGGTTCAAGAGTTTTTCAACTGTTGTATTATTTCTGACAG
AGTCTTGGACTTTGTCCATTCATTTAATTTCAGcattcaaagaatttttg
tgAACTGCAGATGAGTCACCAGTTAAATCCTTTTTTAGCGACGGAGGGAA
CAGTCACAGATatttgtaaagcccgaagggctagataggcaactttaagc
tttctccagcaaaaaaaaagtgaagcaaaaatttgactttttaaatttcg
tgccgatggataggatctagcattttaattgttttcggag

Coding sequence (CDS) from alignment at scaffold_258:8378..8967

>TCONS_00055742 ID=TCONS_00055742|Name=TCONS_00055742|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at scaffold_258:8378..8967 (Clytia hemisphaerica)
GCAATGAAGACAGGATTCGGCAACACCAATTGTTGAGACGTCGGCATCAG
CCATGAGACTGATAGTCCCAGATCCGTCTTCGACTTGCCCAACACACGTC
CACGCTGCTTTCTCGATATGTAGCGCACCCGCTGTAACCCATCTGACTTC
ACCAGGATTCGTATATTCATGACACTTCAAGATAACGGTCAGGCAATGTT
TCACCATTGAGGGTGTTGCGGCTTCTTCAATGAATACTGGTAAGATTTGA
CTCGTCACTGTTTCCTTCAAGACTTGTTCTTCTCTGCGGGCAAAGTAAGC
TGCCCATGATAGGTTCAAGAGTTTTTCAACTGTTGTATTATTTCTGACAG
AGTCTTGGACTTTGTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035085XLOC_035085Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055742-exon-scaffold_258-1491911889:8378..8967TCONS_00055742-exon-scaffold_258-1491911889:8378..8967Clytia hemisphaericaexon
TCONS_00055742-exon-scaffold_258-1510915933:8378..8967TCONS_00055742-exon-scaffold_258-1510915933:8378..8967Clytia hemisphaericaexon
TCONS_00055742-exon-scaffold_258-1575043694:8378..8967TCONS_00055742-exon-scaffold_258-1575043694:8378..8967Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055742-proteinTCONS_00055742-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:8378..8967 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.26985	0	0.633147	1.79618	6.39662	4.48024	3.20365	5.35518	0.639314	0.429173	0.411735	0.802627	1.53942	1.75572	0.882721	1.01149	2.83634	0.903053	1.96764	1.36001	5.00429	4.09308	2.1736	1.63839	1.99272	1.23942	4.7707	2.11848	1.49424	0.998551
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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