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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055723 ID=TCONS_00055723|Name=TCONS_00055723|organism=Clytia hemisphaerica|type=transcript|length=358bp
ATGATCGAGCAAGCATGCAAATTCTACAATCTAAAGCTCTCTGAGGCAAC
TATGAAGCGTCATAAGTCCTCTCTACCGGTGGACGTGAACGTTGTCGGAG
AGGACAAGGTACCAGCATCCCTATCCATTCGGCCAACGATACCCATAGAC
GTGAAGATAAAGCTGTTAAAAGGAATGGACGACATCAAATTTACACGTCT
TTCCATCACTATAGTTGACGATTCTTCTGATAGAGcCGCTGTACCATCAA
AACCTAAGCCACAGAACAAGATTTGTCAAGCCATTGCAGAAATCGATAGG
CATATGAAGAAAAAGGGATACGCTATATGTGAAGGTATGGTTTACAAAAA
GCCCAAGG Run BLAST on NCBI protein sequence of TCONS_00055723-protein >TCONS_00055723-protein ID=TCONS_00055723-protein|Name=TCONS_00055723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MIEQACKFYNLKLSEATMKRHKSSLPVDVNVVGEDKVPASLSIRPTIPID
VKIKLLKGMDDIKFTRLSITIVDDSSDRAAVPSKPKPQNKICQAIAEIDR
HMKKKGYAICEGMVYKKPK Run BLAST on NCBI transcript from alignment at scaffold_258:147438..148701+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055723 ID=TCONS_00055723|Name=TCONS_00055723|organism=Clytia hemisphaerica|type=transcript|length=1264bp|location=Sequence derived from alignment at scaffold_258:147438..148701+ (Clytia hemisphaerica)
ATGATCGAGCAAGCATGCAAATTCTACAATCTAAAGCTCTCTGAGGCAAC
TATGAAGCGTCATAAGGTACgtaatttcaaacttatcaTCGCTCTAAAAC
AACACGGCTCtccttaataaaaaaatttatcttacacccaattttttgat
tgattaTAAACAAATCCTATAATTCTATATTTCACTgtgtttttgatttc
aaataatTAAGTTTTAAAAGTTCAAGATTTCTATAATGtttgtttcatat
ttttagTCCTCTCTACCGGTGGACGTGAACGTTGTCGGAGAGGACAAGGT
ACCAGCATCCCTATCCATTCGGCCAACGATACCCATAGACGTGAAGATAA
AGCTGTTAAAAGGAATGGACGACATCAAATTTACACGTCTTTCCATCACT
ATAGTTGACGATTCTTCTGATAGAGGTATGTTTATTTTgaatatatatgt
gaagaaataagaatttctgtccaactatattcactcaggagatttgggtg
gcagagcagatATATATATATCCAAAGGAGTCTAAGGTGTTTACACCTTT
GTTGAttcatgttttgttttcttctcctgtcagtctgcctggagtttgtt
gtcatcttgtacaggccgctggggtaatgtcgcctggctgtcttaaatga
cagtcagcctgtcccaagccaggataaagacagagggacccagagaggac
taattacccCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNATATatacatcgtctctctaagaggaaaaagaat
tcggccactctttgttgtttgtaggtctgacaggagaaaacattttattt
tcatactatatatatatttataacataatttaagaataaaatgctcaaaa
aactATTTCCAGGACCCTAAAATTAGATCATATTTAGTGTTAATTTTTAG
AACGTTCTTAATGTCCTAAAAACGTTAGGTGGACTtcgaaacaacgttat
gtgttATTTATAACTGAAAGctttcaaaaactaaattttagcCGCTGTAC
CATCAAAACCTAAGCCACAGAACAAGATTTGTCAAGCCATTGCAGAAATC
GATAGGCATATGAAGAAAAAGGGATACGCTATATGTGAAGGTATGGTTTA
CAAAAAGCCCAAGG Coding sequence (CDS) from alignment at scaffold_258:147438..148701+ >TCONS_00055723 ID=TCONS_00055723|Name=TCONS_00055723|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_258:147438..148701+ (Clytia hemisphaerica)
ATGATCGAGCAAGCATGCAAATTCTACAATCTAAAGCTCTCTGAGGCAAC
TATGAAGCGTCATAAGTCCTCTCTACCGGTGGACGTGAACGTTGTCGGAG
AGGACAAGGTACCAGCATCCCTATCCATTCGGCCAACGATACCCATAGAC
GTGAAGATAAAGCTGTTAAAAGGAATGGACGACATCAAATTTACACGTCT
TTCCATCACTATAGTTGACGATTCTTCTGATAGAGcCGCTGTACCATCAA
AACCTAAGCCACAGAACAAGATTTGTCAAGCCATTGCAGAAATCGATAGG
CATATGAAGAAAAAGGGATACGCTATATGTGAAGGTATGGTTTACAAAAA
GCCCAAGATGATCGAGCAAGCATGCAAATTCTACAATCTAAAGCTCTCTG
AGGCAACTATGAAGCGTCATAAGTCCTCTCTACCGGTGGACGTGAACGTT
GTCGGAGAGGACAAGGTACCAGCATCCCTATCCATTCGGCCAACGATACC
CATAGACGTGAAGATAAAGCTGTTAAAAGGAATGGACGACATCAAATTTA
CACGTCTTTCCATCACTATAGTTGACGATTCTTCTGATAGAGcCGCTGTA
CCATCAAAACCTAAGCCACAGAACAAGATTTGTCAAGCCATTGCAGAAAT
CGATAGGCATATGAAGAAAAAGGGATACGCTATATGTGAAGGTATGGTTT
ACAAAAAGCCCAAGATGATCGAGCAAGCATGCAAATTCTACAATCTAAAG
CTCTCTGAGGCAACTATGAAGCGTCATAAGTCCTCTCTACCGGTGGACGT
GAACGTTGTCGGAGAGGACAAGGTACCAGCATCCCTATCCATTCGGCCAA
CGATACCCATAGACGTGAAGATAAAGCTGTTAAAAGGAATGGACGACATC
AAATTTACACGTCTTTCCATCACTATAGTTGACGATTCTTCTGATAGAGc
CGCTGTACCATCAAAACCTAAGCCACAGAACAAGATTTGTCAAGCCATTG
CAGAAATCGATAGGCATATGAAGAAAAAGGGATACGCTATATGTGAAGGT
ATGGTTTACAAAAAGCCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055723-exon-scaffold_258-1491911889:147438..147503 | TCONS_00055723-exon-scaffold_258-1491911889:147438..147503 | Clytia hemisphaerica | exon |
| TCONS_00055723-exon-scaffold_258-1510915933:147438..147503 | TCONS_00055723-exon-scaffold_258-1510915933:147438..147503 | Clytia hemisphaerica | exon |
| TCONS_00055723-exon-scaffold_258-1575043694:147438..147503 | TCONS_00055723-exon-scaffold_258-1575043694:147438..147503 | Clytia hemisphaerica | exon |
| TCONS_00055723-exon-scaffold_258-1491911889:147694..147862 | TCONS_00055723-exon-scaffold_258-1491911889:147694..147862 | Clytia hemisphaerica | exon |
| TCONS_00055723-exon-scaffold_258-1510915933:147694..147862 | TCONS_00055723-exon-scaffold_258-1510915933:147694..147862 | Clytia hemisphaerica | exon |
| TCONS_00055723-exon-scaffold_258-1575043694:147694..147862 | TCONS_00055723-exon-scaffold_258-1575043694:147694..147862 | Clytia hemisphaerica | exon |
| TCONS_00055723-exon-scaffold_258-1491911889:148579..148701 | TCONS_00055723-exon-scaffold_258-1491911889:148579..148701 | Clytia hemisphaerica | exon |
| TCONS_00055723-exon-scaffold_258-1510915933:148579..148701 | TCONS_00055723-exon-scaffold_258-1510915933:148579..148701 | Clytia hemisphaerica | exon |
| TCONS_00055723-exon-scaffold_258-1575043694:148579..148701 | TCONS_00055723-exon-scaffold_258-1575043694:148579..148701 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_258 | supercontig | scaffold_258:147438..148701 + |
Blast
The following BLAST results are available for this feature:
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