TCONS_00055805 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055805
Unique NameTCONS_00055805
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055805 ID=TCONS_00055805|Name=TCONS_00055805|organism=Clytia hemisphaerica|type=transcript|length=533bp
CTCACTTTTTACTATCACTATTAATGACAAAGTTTGGACTCGTGCGTACG
AAGTGTCAGATGTTCTAGACTACAAAAAAGGTCGAACTAGAGACGCGTTA
AAGAGGCACGTCAGTACTGAAAATAAGCGCCATAGGTACGAACTCGAAGG
ACGCGTAGCGGCAGCGCGTCCTTTTGANGTCGAACTAGAGACGCGTTAAA
GAGGCACGTCAGTACTGAAAATAAGCGCCATAGGTACGAACTCGAAGGGT
GCGTAGCGGCAGCGCGTCCTTTTGGATGGCCAAAAAACAGCCAACCAGAC
GAATATTACATCAACGAAGAAGGAATGTATGAGCTACTCTTTAAAAGCCA
ACAGCCTAAGGCAAAAGAATTTAGGAGCTATTGTTGCAACGAGTTGTTCC
CGAAAATTCGAAATCAGCTTTTACatcaaaagattgaagaaaaagacGGC
CAACTCGCCCTTCTCAATGACGACTTAACTAATGCAGAACAAAACGTTGT
AGCTCTGGAGCAAGATAATCTTGAGCTCCAAGC
Run BLAST on NCBI

transcript from alignment at scaffold_26:10912..11444

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055805 ID=TCONS_00055805|Name=TCONS_00055805|organism=Clytia hemisphaerica|type=transcript|length=533bp|location=Sequence derived from alignment at scaffold_26:10912..11444 (Clytia hemisphaerica)
GCTTGGAGCTCAAGATTATCTTGCTCCAGAGCTACAACGTTTTGTTCTGC
ATTAGTTAAGTCGTCATTGAGAAGGGCGAGTTGGCCgtctttttcttcaa
tcttttgatGTAAAAGCTGATTTCGAATTTTCGGGAACAACTCGTTGCAA
CAATAGCTCCTAAATTCTTTTGCCTTAGGCTGTTGGCTTTTAAAGAGTAG
CTCATACATTCCTTCTTCGTTGATGTAATATTCGTCTGGTTGGCTGTTTT
TTGGCCATCCAAAAGGACGCGCTGCCGCTACGCACCCTTCGAGTTCGTAC
CTATGGCGCTTATTTTCAGTACTGACGTGCCTCTTTAACGCGTCTCTAGT
TCGACNTCAAAAGGACGCGCTGCCGCTACGCGTCCTTCGAGTTCGTACCT
ATGGCGCTTATTTTCAGTACTGACGTGCCTCTTTAACGCGTCTCTAGTTC
GACCTTTTTTGTAGTCTAGAACATCTGACACTTCGTACGCACGAGTCCAA
ACTTTGTCATTAATAGTGATAGTAAAAAGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035130XLOC_035130Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055805-exon-scaffold_26-1491911889:10912..11444TCONS_00055805-exon-scaffold_26-1491911889:10912..11444Clytia hemisphaericaexon
TCONS_00055805-exon-scaffold_26-1510915933:10912..11444TCONS_00055805-exon-scaffold_26-1510915933:10912..11444Clytia hemisphaericaexon
TCONS_00055805-exon-scaffold_26-1575043694:10912..11444TCONS_00055805-exon-scaffold_26-1575043694:10912..11444Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:10912..11444 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.213558	0.123981	0.121296	0	0	0	0.131795	0.0922729	0.114295	0.332812	0	0	0	0.0621773	0	0.411003	0.084253	0	0	0.52935	0.309838	0.12555	0.228286	0	0	1.20116	1.76263	0.243071	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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