TCONS_00055823 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055823
Unique NameTCONS_00055823
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055823 ID=TCONS_00055823|Name=TCONS_00055823|organism=Clytia hemisphaerica|type=transcript|length=451bp
TCGCGAAAATGACCCCATTTAGGTAAATAAAGACTCTAAGATAAAATTTC
ACGTATATATATGAAAAATACACAACTCTAAGATAAAAATGCATGTACAT
GAAAAATACACAACTCTAAGATAAAAATGCATGTACATGAAAAATACACA
ACTAACTCTCAGATAAAAATGTGCATGCACAAGAAAAATATCAACCTGTA
TGAGATAAAAATATATGGAGTAGATAAAATACTAACTCTAGATAAAAACA
CATGTAATAAGATAAAAACAAGTCTTGGATAAAAATACAAACTTTAAGAT
AAAATGAGACCTTTCAAGACCCAGACCAAAAGTGAGCCTAAGTTAAGGAA
TTTAAgacaaaaaaacgtgtaacagtTAAAATTAgtataaaacttgtttt
ctaGATCAACATTGTATTTCTTCCAATAATGAAACATTTGTAGAAGGGCT
N
Run BLAST on NCBI

transcript from alignment at scaffold_260:13928..14574-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055823 ID=TCONS_00055823|Name=TCONS_00055823|organism=Clytia hemisphaerica|type=transcript|length=647bp|location=Sequence derived from alignment at scaffold_260:13928..14574- (Clytia hemisphaerica)
TCGCGAAAATGACCCCATTTAGGTAAATAAAGACTCTAAGATAAAATTTC
ACGTATATATATGAAAAATACACAACTCTAAGATAAAAATGCATGTACAT
GAAAAATACACAACTCTCAGATAAAAATGTGCATGCACATGAAAAATACA
CAACTCTAAGATAAAAATGCATGTACATGAAAAATACACAACTCTCAGAT
AAAAATGTGCATGCACATGAAAAATACACAACTCTAAGATAAAAATGCAT
GTACATGAAAAATACACAACTCTCAGATAAAAATGTGCATGCACATGAAA
AATACACAACTCTAAGATAAAAATGCATGTACATGAAAAATACACAACTA
ACTCTCAGATAAAAATGTGCATGCACAAGAAAAATATCAACCTGTATGAG
ATAAAAATATATGGAGTAGATAAAATACTAACTCTAGATAAAAACACATG
TAATAAGATAAAAACAAGTCTTGGATAAAAATACAAACTTTAAGATAAAA
TGAGACCTTTCAAGACCCAGACCAAAAGTGAGCCTAAGTTAAGGAATTTA
AGACAAAAAAACGTGTAACAGTTAAAATTAGTATAAAACTTGTTTTCTAG
ATCAACATTGTATTTCTTCCAATAATGAAACATTTGTAGAAGGGCTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035145XLOC_035145Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055823-exon-scaffold_260-1575043694:14477..14574TCONS_00055823-exon-scaffold_260-1575043694:14477..14574Clytia hemisphaericaexon
TCONS_00055823-exon-scaffold_260-1575043694:13928..14280TCONS_00055823-exon-scaffold_260-1575043694:13928..14280Clytia hemisphaericaexon
TCONS_00055823-exon-scaffold_260-1510915933:14477..14574TCONS_00055823-exon-scaffold_260-1510915933:14477..14574Clytia hemisphaericaexon
TCONS_00055823-exon-scaffold_260-1510915933:13928..14280TCONS_00055823-exon-scaffold_260-1510915933:13928..14280Clytia hemisphaericaexon
TCONS_00055823-exon-scaffold_260-1491911889:14477..14574TCONS_00055823-exon-scaffold_260-1491911889:14477..14574Clytia hemisphaericaexon
TCONS_00055823-exon-scaffold_260-1491911889:13928..14280TCONS_00055823-exon-scaffold_260-1491911889:13928..14280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_260supercontigscaffold_260:13928..14574 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.275049	0	0	0	2.14375	1.72214	0.589366	0.970765	1.70703	2.14059	1.43958	1.26547	0.360002	1.36593	0.962205	0.755469	0	0.675973	1.32617	1.07562	0	0.00092812	0.168091	0	2.04765	2.10714	0.621908	0.847348	0.782579	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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