TCONS_00055835 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00055835
Unique Name	TCONS_00055835
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	591

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_262:11899..17346+

transcript sequence

>TCONS_00055835 ID=TCONS_00055835|Name=TCONS_00055835|organism=Clytia hemisphaerica|type=transcript|length=591bp
TACAGGTGTAATGTTGAACAAATTGTTGGTACTTTTTGTGGAGATGATAA
CAAGCCACATGATATTTACACTCATTCTAAATGTGCTACCTTAAAATTGG
TCAATGGATATAAATATGCGAGTTATTTTCGAGTCTTGGCTGAATTCATA
GATCAAGCGTCTATCCCGCACTCTGATTGCTCCTGGTATGAGAGGGTGTT
AACAGAGCCAAGCGGTGTGATTATTTCACCAGGGTGGCCACACGGTACCG
GCAAAAACAAAGTGGAATGTAATTGGAGAATTAAAACACAAAATGACAAA
AGCATTACTCTAAACATAATGGATGACGATTTTCAATCGAATGATTATTT
CCCCTCGTGCAAATCACATCTCAAACTCGAAGGCAAGCAATCAAATCCGT
ACATCTTTTTCTACAAGTACATTTGCGACAACGGAAATCATATCTTGAGA
TCTAGCAAcacatataatacgtataaCTATGATGTCAATGTTGAATACAT
ATTCAAGAAGGTCTTTAACAACAAAAACTACAGAGGTTTAGCACTGGGAT
GGACAACTTATGACAACCCAAAACATCACACTCGTCAAAGT

Run BLAST on NCBI

transcript from alignment at scaffold_262:11899..17346+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00055835 ID=TCONS_00055835|Name=TCONS_00055835|organism=Clytia hemisphaerica|type=transcript|length=5448bp|location=Sequence derived from alignment at scaffold_262:11899..17346+ (Clytia hemisphaerica)
TACAGGTGTAATGTTGAACAAATTGTTGGTACTTTTTGTGGAGATGATAA
CAAGCCACATGATATTTACACTCATTCTAAATGTGCTACCTTAAAATTGG
TCAATGGATATAAATATGCGAGTTATTTTCGAGTCTTGGCTGAATTCATA
GATCAAGCGTCTATCCCGCACTCTGATTGCTCCTGGTATGAGAGGTAAGA
TTTAGCCTACAATGTCATTTTAAAGTTCATGAAATGTCGTAAAAAGTAAT
TTTATGTGCATTTTATTGGGTGGAAATTACTTCCGCACGATAcaggttct
tgaaaaaatccATAAAGAGCGCTAGAAAGATGAAAAGACTTGATGAAAAT
GAGTTCctcaaaaatctttaatttgATAAACTCACACAACAAAAATTGTT
GGGTATTCTTCCAATGTTCTTAAGGTATTCTTCCGATGTTTTTAAGGTAT
TCTTTCGATGTTCTTAAGGTATTCTTTCGATGTTCTTAAGGTATTCTTTC
GATGTTCTTAAGGTATTCTTTCGATGTTCTTAAGGTATTCTTTCGATGGT
CTTAAGGTATTCCTTCGATGTTCTTAAGGTATTCTTTCGAtgttcttagg
gtattctttcGGGTAAAAACAGCTCATTGACCTCAATGAGCTATTTTTAC
CCGAAAGTAACATCGATTGATATGGCACAATTCTTGTTTATTTACTCTTT
AGGGTGTTAACAGAGCCAAGCGGTGTGATTATTTCACCAGGGTGGCCACA
CGGTACCGGCAAAAACAAAGTGGAATGTAATTGGAGAATTAAAACACAAA
ATGACAAAAGCATTACTCTAAACATAATGGATGACGATTTTCAATCGAAT
GATTATTTCCCCTCGTGCAAATCACATCTCAAACTCGAAGGTTAGTTTCA
TCTAGCGTGATCTTTTTGCGTATTTTTCGTTCAACTCAAGGATTGCCGAG
TCCTGATAAATTTTAATTACTTAAggactctgaccatagtccCGGCGGGG
AGGGGAGGTACTTAGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACC
AAAAATAGCACTAGTGGACGGCAGGCTTTAGGATTCTTTTGAGGTTTCAT
TAATTTTAAATTACTGAGGTATTTAATCTGTCATACTTTCTTCCCTCAAA
AAGTTCTTTCTGCAGAATTAAAACCAGATTATAAGAAATCTATGGGGTAG
ACGGGGGTAGTtgggacagaaatattttagacgatacgcatcccctatat
caaatcatatcagaggggatgcgtgcagcctataCAAGTGCTTGAGAAAT
TGCGCAATACAGCACGTCGAATCTTTCTGTCATTACTCTGCGATgcaata
taaaaatattgccGAACAAACTGCAAGCGCTTGCAATTTCTCCTTGCAAT
TTGACGTTTTTCtcataaaacatttttatttgtatAATTTCAGACTCTTT
CTAAGGAGGTTACGCTTCAAGAATCTCCAGACGGAAGCAATGAAACAATT
GCAATGAAGCCGCATTAAAAAAGCTTaaaggttttgattttaaataagag
tgataccgtttgcttactcatcaattttaatttacaagctttttcgcatt
tttcgcacacagatgtggagcagaTTGGCaagaaagaggagaagaaaaac
atttttttgcttatatcagcataacataacaataggaagacactgccccg
atatgaaatatgtgtctgatttGAAACGGGAtcacttatttaaaaacaaa
acctttaagagacTGAAAACGCTAATCCGAAAGGTTTTGATtaccttaat
ttttttttcaggcaagCAATCAAATCCGTACATCTTTTTCTACAAGTACA
TTTGCGACAACGGAAAtcatatctcgagatctagcaacacatataatacg
tataaCTATGATGTCAACGTTGAATACGTATTCAAGAAANTATCTTGAGA
TCTAGCAAcacatataatacgtataaCTATGATGTCAATGTTGAATACAT
ATTCAAGAAGGTCTTTAACAACAAAAACTACAGAGGTTTAGCACTGGGAT
GGACAACTTATGACAACCCAAAACATCACACTCGTCAAAGTAAGATATTT
TATTGTTACAGTGAAGTCCCTGGGAgggtagactagcaagcgtctgtctt
tcttTGGACACATGAaagcgggaatagtgcttataatagaGAGTTCTCGT
CAAAGTAAGTATCTTAActaataatacaccttttcgatcgtagccgctaa
ttgccacgcgggcattttttgtctgttttaccaccctaaaaccatctttt
tttcgcacctaaagacaaaagtgtaaaaaaatgattgggtcgagtttagg
gtggtaaattaaataataaagtggcacgcgcctgaccgtgcGACTACATT
CGAAAAGGTGTAATAAACGGGATAAATAACTTTAAACCgttgaatccaaa
agttccattaagaatcaaatcgatctgattggttaaaacttaaaaacgat
GTCATTGACCTAAATGAAATAGTTACTAATCAGAAAAAGCGTTTGATTGT
TGAAGGTAAACCTTTTCATGAATTATGTCAAGAGGAAAACGCTTAcctcc
ttttcaaaatattacctactacagggtgtcccgaaaaaaattccTGTCTC
TGAGCACGAGGTCAAGTAGAAATTTGTTTTGTGTGTATGTCTAGTTTATC
TCTTTAACGCAACGCAGTAATTAACACTTTAATGGTTACAGTGAAGCAGT
AGCACAATAAACTTAAGATTAAAATATCAATTGTGTTgttaaataaatca
tttttatGAACTTTTTATGAACTTCAAACaaagtaaaaacattttaatga
tcGCATTATATTTAACCACANcctatatcaaatcatatcagaggggatgc
gtgcagcctataCAAGTGCTTGAGAAATTGCGCAATACAGCACGTCGAAT
CTTTCTGTCATTACTCTGCGATgcaatataaaaatattgccGAACAAACT
GCAAGCGCTTGCAATTTCTCCTTGCAATTTGACGTTTTTCtcataaaaca
tttttatttgtatAATTTCAGACTCTTTCTAAGGAGGTTACGCTTCAAGA
ATCTCCAGACGGAAGCAATGAAACAATTGCAATGAAGCCGCATTAAAAAA
GCTTAAAGGTTTCgattttaaataagagtgataccgtttgcttactcatc
aattttaattcacaagctttttcgcatttttcgcacacagatgtggagca
gaTTGGCaagaaagaggagaagaaaaacatttttttgcttatatcagcat
aacataacaataggaagacactgccCCGATATGAAATATTTGTCTGATTT
GAAACGGGAtcacttatttaaaaacaaaacctttaagagacTGAAAACGC
TAATCCGAAAGGTTTTGATTACCTTAATTTGTTTTTCAGGCAAGCAATCA
AATCCGTACATCTTTTTCTACAAGTACATTTGCGACAACGGAAATCATAT
CTTGAGATCTAGCAAcacatataatacgtataaCTATGATGTCAATGTTG
AATACATATTCAAGAAGGTCTTTAACAACAAAAACTACAGAGGTTTAGCA
CTGGGATGGACAACTTATGACAACCCAAAACATCACACTCGTCAAAGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035155	XLOC_035155	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00055835-exon-scaffold_262-1491911889:11899..12092	TCONS_00055835-exon-scaffold_262-1491911889:11899..12092	Clytia hemisphaerica	exon
TCONS_00055835-exon-scaffold_262-1510915933:11899..12092	TCONS_00055835-exon-scaffold_262-1510915933:11899..12092	Clytia hemisphaerica	exon
TCONS_00055835-exon-scaffold_262-1575043694:11899..12092	TCONS_00055835-exon-scaffold_262-1575043694:11899..12092	Clytia hemisphaerica	exon
TCONS_00055835-exon-scaffold_262-1491911889:12601..12788	TCONS_00055835-exon-scaffold_262-1491911889:12601..12788	Clytia hemisphaerica	exon
TCONS_00055835-exon-scaffold_262-1510915933:12601..12788	TCONS_00055835-exon-scaffold_262-1510915933:12601..12788	Clytia hemisphaerica	exon
TCONS_00055835-exon-scaffold_262-1575043694:12601..12788	TCONS_00055835-exon-scaffold_262-1575043694:12601..12788	Clytia hemisphaerica	exon
TCONS_00055835-exon-scaffold_262-1491911889:17138..17346	TCONS_00055835-exon-scaffold_262-1491911889:17138..17346	Clytia hemisphaerica	exon
TCONS_00055835-exon-scaffold_262-1510915933:17138..17346	TCONS_00055835-exon-scaffold_262-1510915933:17138..17346	Clytia hemisphaerica	exon
TCONS_00055835-exon-scaffold_262-1575043694:17138..17346	TCONS_00055835-exon-scaffold_262-1575043694:17138..17346	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_262	supercontig	scaffold_262:11899..17346 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.791764	0	0	1.30918	2.67517	8.65001e-09	0	0	0	0	0.247786	2.0837e-07	0	0	0	0	1.08644	1.78502	0	0	0	3.17606	0	4.71108e-08	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00055835 vs. Swiss-Prot (Human)

BLAST of TCONS_00055835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00055835 (transcript) - C. hemisphaerica