TCONS_00055885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055885
Unique NameTCONS_00055885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055885 ID=TCONS_00055885|Name=TCONS_00055885|organism=Clytia hemisphaerica|type=transcript|length=782bp
atagcctagaagcttGACGACTCAATGGAGATTTAAAAGAGATCAAGAAT
GAACTTTTTTGTATATTGTAGCTACAGGCCCTAAAATGTTAGCTTTGATA
TATATATTAGTGGTTGTATGTCTgctgttttttactttttagaagTCCTC
CCTATTTGTAAGCAAGATATCACTTTTCCTGTTCTTGTCTCTTTATTTCG
GCAACCACTGCTTGTCGCTTCATGTTGCTTCTGGGACCTACCTCTCGAAA
TGGTTGGAAATTTAGCAGGCCTACTCCCTCTTTCATCTTTAGCTTCTTGG
ACGGCGCCTACAATATCCGTATGGTTAAGATACGATATTTCTTGACAAGT
TGCTTCCTCCACCTTCCATTTTCTCCCAGTCTTCACCAGAGGGGGGTCCT
CTTTTATTCCACCGTTGTTCGAAAATCTTAGCATTATGACATATTAATGA
tatattattattttcaattgtcattgtttctttattattttcaagCTAGC
tagtaatttatttttgaattgatTTGTGATTATTAAATGATCATATGAAT
AATTAATTTCTAAATAATTCAATATTCTGTATATATTACTGTCAATTGGG
GTTACTTTCATAAGTGAGGGGTAACTTTCATCACCTGCTGTCCACAACAT
TTTCTGGTCCGCAATTAAAAAAGTGTGTTTTGAATTGAAAGAGGGTTGTT
GCAATAGACAGACTGTACCTTTAAAATTATAAAGGCTGGTgcgtccagtc
aaaacacagagtTGATCTGTAGCATCTCGCTT
Run BLAST on NCBI

protein sequence of TCONS_00055885-protein

>TCONS_00055885-protein ID=TCONS_00055885-protein|Name=TCONS_00055885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MLRFSNNGGIKEDPPLVKTGRKWKVEEATCQEISYLNHTDIVGAVQEAKD
ERGSRPAKFPTISRGRSQKQHEATSSGCRNKETRTGKVISCLQIGRTSKK
Run BLAST on NCBI

transcript from alignment at scaffold_264:56068..56849

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055885 ID=TCONS_00055885|Name=TCONS_00055885|organism=Clytia hemisphaerica|type=transcript|length=782bp|location=Sequence derived from alignment at scaffold_264:56068..56849 (Clytia hemisphaerica)
AAGCGAGATGCTACAGATCAactctgtgttttgactggacgcACCAGCCT
TTATAATTTTAAAGGTACAGTCTGTCTATTGCAACAACCCTCTTTCAATT
CAAAACACACTTTTTTAATTGCGGACCAGAAAATGTTGTGGACAGCAGGT
GATGAAAGTTACCCCTCACTTATGAAAGTAACCCCAATTGACAGTAATAT
ATACAGAATATTGAATTATTTAGAAATTAATTATTCATATGATCATTTAA
TAATCACAAatcaattcaaaaataaattactaGCTAGcttgaaaataata
aagaaacaatgacaattgaaaataataatataTCATTAATATGTCATAAT
GCTAAGATTTTCGAACAACGGTGGAATAAAAGAGGACCCCCCTCTGGTGA
AGACTGGGAGAAAATGGAAGGTGGAGGAAGCAACTTGTCAAGAAATATCG
TATCTTAACCATACGGATATTGTAGGCGCCGTCCAAGAAGCTAAAGATGA
AAGAGGGAGTAGGCCTGCTAAATTTCCAACCATTTCGAGAGGTAGGTCCC
AGAAGCAACATGAAGCGACAAGCAGTGGTTGCCGAAATAAAGAGACAAGA
ACAGGAAAAGTGATATCTTGCTTACAAATAGGGAGGActtctaaaaagta
aaaaacagcAGACATACAACCACTAATATATATATCAAAGCTAACATTTT
AGGGCCTGTAGCTACAATATACAAAAAAGTTCATTCTTGATCTCTTTTAA
ATCTCCATTGAGTCGTCaagcttctaggctat

Coding sequence (CDS) from alignment at scaffold_264:56068..56849

>TCONS_00055885 ID=TCONS_00055885|Name=TCONS_00055885|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_264:56068..56849 (Clytia hemisphaerica)
ATGCTAAGATTTTCGAACAACGGTGGAATAAAAGAGGACCCCCCTCTGGT
GAAGACTGGGAGAAAATGGAAGGTGGAGGAAGCAACTTGTCAAGAAATAT
CGTATCTTAACCATACGGATATTGTAGGCGCCGTCCAAGAAGCTAAAGAT
GAAAGAGGGAGTAGGCCTGCTAAATTTCCAACCATTTCGAGAGGTAGGTC
CCAGAAGCAACATGAAGCGACAAGCAGTGGTTGCCGAAATAAAGAGACAA
GAACAGGAAAAGTGATATCTTGCTTACAAATAGGGAGGActtctaaaaag
taa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035192XLOC_035192Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055885-proteinTCONS_00055885-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055885-exon-scaffold_264-1491911889:56068..56849TCONS_00055885-exon-scaffold_264-1491911889:56068..56849Clytia hemisphaericaexon
TCONS_00055885-exon-scaffold_264-1510915933:56068..56849TCONS_00055885-exon-scaffold_264-1510915933:56068..56849Clytia hemisphaericaexon
TCONS_00055885-exon-scaffold_264-1575043694:56068..56849TCONS_00055885-exon-scaffold_264-1575043694:56068..56849Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_264supercontigscaffold_264:56068..56849 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.247663	0.181133	0	0.068586	0.333988	0.395882	0.796025	0.149046	0.678278	0.452392	0.439103	0.412356	0.164713	0.342112	0.527367	0.415027	1.162	0.857528	0.592361	0.895357	2.03537	1.75196	0.780906	0.709957	0	0.177985	1.44328	0.271819	0.962104	0.910215
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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