TCONS_00055879 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055879
Unique NameTCONS_00055879
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055879 ID=TCONS_00055879|Name=TCONS_00055879|organism=Clytia hemisphaerica|type=transcript|length=1375bp
GTGAAATTGAAGACTGCGTCAACCTGACGATGAACAATCATCGAAACCAC
CTTTCTGTAAGAACTGATTCAATTCATTATTTGCTTCCCAAAAACTGTTC
TACTCTCGTGTACCTGATGGACGGGATAAGCGGGGTGggtggaaaaaaaa
tcaattagtgGGGGGATtctcagccataaaaaacatgatgAAATCGCAAT
ATCCATGATTTATTCTCAACTTTGGTTCTTGGGGTCTGGGACAGGTTTTT
CGCAACTGCTACAAATGGGCCTCCAAAGAGTTTgaaaaatactgaagttg
agcccagtgtgTTGCTCATGTTCGACTATTGTTTAATTTGTTCTCTACAA
TAGACCTTGGCGAAAAAAAAACGAGGAACAGAGGTTTCAACCACgttcaa
aaagacaaaaagccTCCCGGCTAATTTCAACTTAAAAACAGGGTACAAAG
TTTATGTCGTTCACAGGGCTTACGTGAGAGCCAAGAAAGTCGGAAAAGCC
TTGGTTCTTGAGTCCACAGATGATATGTACAAACTCTACTTGAATTCACA
ATACGATACTAAAACGCTGATTGAATTACCAAAACATCAAGAAAATTTGG
TGGCTAATTTCCATCAACTGAAGCTTGGAAACATATTTTGGATTAAAAAG
TGTGACACAAGTCCGGTCACACAGAAAAAACCTACAACGAAACCAACCAT
CCCAAGAACAATCCCAACCATCCCAAAAGCAGCTCAGCCtaccaagaaaa
agaaaacgaaaacatCCACTCCAAAGAGAAAAGATGTTTCATTTGAAATA
GAAAATTCAGACATGGTTTTACAGCAGTCAAATATACAGAATGTGACACC
AACCTCTCAAAAAGGTATcctattttgaaacttttaattttGTGGTAAAC
ATCTTTTTGCCTTAAGtaggggattaatttttgcgggaagtTATTTTTGT
GAGGACGGGAATTGTAAATTTTTCGTCAtgcaaaaagaaccaattgtATT
GACGTGTAGCATGCcgtttattttggcgaatgacatcgtaaatctgttct
attttgacttattttgagcaaatttgataaatttaagGGTTTATTTAGGC
AAGAAAACgaagaatttaatttggcgggaacttttttggcgagtgagcaa
aaaatttaattttggcgggaactaattttggcgaatttcgtctaaatcag
ccaaatccgccaacattagttcccgcaaaaataagttcccttaaggtatt
tgtAACTtctatgataaaatgataaaaactttattacaattcttttttca
gaaaaatcagataTGGTTTTACAGTCCGATACTATACAGAATGTGACACC
AACCTCTCAAAAAGGTATcctattt
Run BLAST on NCBI

transcript from alignment at scaffold_264:58420..61212-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055879 ID=TCONS_00055879|Name=TCONS_00055879|organism=Clytia hemisphaerica|type=transcript|length=2793bp|location=Sequence derived from alignment at scaffold_264:58420..61212- (Clytia hemisphaerica)
GTGAAATTGAAGACTGCGTCAACCTGACGATGAACAATCATCGAAACCAC
CTTTCTGTAAGAACTGATTCAATTCATTATTTGCTTCCCAAAAACTGTTC
TACTCTCGTGTACCTGATGGACGGGATAAGCGGGGTGGGTGGAAAAAAAA
TCAATTAGTGGGGGGATTCTCAGCCATAAAAAACATGATGAAATCGCAAT
ATCCATGATTTATTCTCAACTTTGGTTCTTGGGGTCTGGGACAGGTTTTT
CGCAACTGCTACAAATGGGCCTCCAAAGAGTTTGAAAAATACTGAAGTTG
AGCCCAGTGTGTTGCTCATGTTCGACTATTGTTTAATTTGTTCTCTACAA
TAGACCTTGGCGAAAAAAAAACGAGGAACAGAGGTTTCAACCACGTTCAA
AAAGACAAAAAGCCTCCCGGCTAATTTCAACTTAAAAACAGGGTGAGTTT
TAATGAGGCACGAAACAGATTAAATTTGTTGTTCTGTTGTTGTTCAGAAT
GTTGGAAAAATATGGTCGGTATAATTAAATTAATTTTTCAAAATTTGGAG
TCAGCAAAAGTTTTTGTGGGGTTGGGTATGTTATACTTCAATGAAAATTG
TAATCAAAATGGTTTCAGACATTTTGAGGCAAGGCGTCAAAAAACCACAT
TCCTTTGTTATTCAGACCGAAGTTTAGAAGACAAAATAGGGGGCAGTAGG
TTATGACAGTTATGACAAAAACGTCGACTCATTTAATTCCAGGTACAAAG
TTTATGTCGTTCACAGGGCTTACGTGAGAGCCAAGAAAGTCGGAAAAGCC
TTGGTTCTTGAGTCCACAGGTAACTTAGAAAATACAAAGAATTTAAATTT
TTGTCCATACTTTTATATTTGCTGCAACACTGAAGTAAGACTCAAATATT
TATTTAAAGAATAGTAGTTTGAATTTTTTGTGAAGTACATAGTTCCAAAA
ATTACGTATAACGTATTTTGAGTGTACATACTTTTTGAATGGTCTTTTAC
GAAACTTCCTTAAATTATGCTTCATATAAAGTTCCAAACATTTTGTGTAT
ATATATTTTGATGAATCAGCATTTCCTATAAGTCTTTAGTACGTAAATTT
CACAAATATGAATAAATTTGAGAAATTCATCCAACAATTATTTCTTTGTA
TTTACTTCAATAGATGATATGTACAAACTCTACTTGAATTCACAATACGA
TACTAAAACGCTGATTGAATTACCAAAACATCAAGAAAATTTGGTGGCTA
ATTTCCATCAACTGAAGGTATCAGGGATTTTTTCAAGCACTTTGAGCTAC
TACAGTTTTTGTATAATTATATTGAGTTTCAAATGCGATTTAGCTGGGGG
TCTGGGGGTCGCTTTAAGCCCCCCAGTGGGGGTTCTAAATTTGGCCCTAG
ATTGCTTTAAACAAGAAAAAAAAGTGAAAACATTAATGCCGCCTAAGTAA
AAATAGAAAGATTTTGGCCCATTTTACGCCGGTCCTTTTAACGCGGCCCT
TAATCACGCCACGCACGAGCCCAAAAATAACGCCATTAAGGGCATAGTTT
CTAGAGGGGTCAAGACCCCCCCCCATTAGGTAAGAAGACCCTCCATTAGG
TAAGAAGACCCCCCCTTAAGTGGGAACCCCAGCCATTCTAATTCGCGTCG
GCATTCGGCTATTGCTGACGCAAATGCCAACGTAAATTTGGGTTTTCTTT
GTATAAGAAGTGTGATTTTCTCTCTGTGGGGTCTTGGGTAATTGTTCCCT
TTCACCTTTTTATAGCTTGGAAACATATTTTGGATTAAAAAGTGTGACAC
AAGTCCGGTCACACAGAAAAAACCTACAACGAAACCAACCATCCCAAGAA
CAATCCCAACCATCCCAAAAGCAGCTCAGCCTACCAAGAAAAAGAAAACG
AAAACATCCACTCCAAAGAGAAAAGATGTTTCATTTGAAATAGGTAATTT
TTCAAACACTTCTTTAGGCAAGAAAACAAAAAATTTAATTTTGGCGGGAA
CTTATTTTGGCGAGTGAGCAAAAAGTTTAATTTTTGCGGGAACTAATTTT
GGCAAATTTGGTCTAAATCGGCCAAATCCGCCAAAATTAGTTCCCGCAAA
AATAAGTTCCCTTAAGATATTTGTAACTTTACATGCACGTTCAAGTTTTT
CGTGCATTGCCAGTACTCTTAAACTTCTATGATAAAATGATAAAAACTTT
ATTACAATTCTTTTCTCAGAAAATTCAGACATGGTTTTACAGCAGTCAAA
TATACAGAATGTGACACCAACCTCTCAAAAAGGTATCCTATTTTGAAACT
TTTAATTTTGTGGTAAACATCTTTTTGCCTTAAGTAGGGGATTAATTTTT
GCGGGAAGTTATTTTTGTGAGGACGGGAATTGTAAATTTTTCGTCATGCA
AAAAGAACCAATTGTATTGACGTGTAGCATGCCGTTTATTTTGGCGAATG
ACATCGTAAATCTGTTCTATTTTGACTTATTTTGAGCAAATTTGATAAAT
TTAAGGGTTTATTTAGGCAAGAAAACGAAGAATTTAATTTGGCGGGAACT
TTTTTGGCGAGTGAGCAAAAAATTTAATTTTGGCGGGAACTAATTTTGGC
GAATTTCGTCTAAATCAGCCAAATCCGCCAACATTAGTTCCCGCAAAAAT
AAGTTCCCTTAAGGTATTTGTAACTTCTATGATAAAATGATAAAAACTTT
ATTACAATTCTTTTTTCAGAAAAATCAGATATGGTTTTACAGTCCGATAC
TATACAGAATGTGACACCAACCTCTCAAAAAGGTATCCTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035186XLOC_035186Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055879-exon-scaffold_264-1575043694:60771..61212TCONS_00055879-exon-scaffold_264-1575043694:60771..61212Clytia hemisphaericaexon
TCONS_00055879-exon-scaffold_264-1575043694:60394..60470TCONS_00055879-exon-scaffold_264-1575043694:60394..60470Clytia hemisphaericaexon
TCONS_00055879-exon-scaffold_264-1575043694:59946..60049TCONS_00055879-exon-scaffold_264-1575043694:59946..60049Clytia hemisphaericaexon
TCONS_00055879-exon-scaffold_264-1575043694:59270..59447TCONS_00055879-exon-scaffold_264-1575043694:59270..59447Clytia hemisphaericaexon
TCONS_00055879-exon-scaffold_264-1575043694:58420..58993TCONS_00055879-exon-scaffold_264-1575043694:58420..58993Clytia hemisphaericaexon
TCONS_00055879-exon-scaffold_264-1510915933:60771..61212TCONS_00055879-exon-scaffold_264-1510915933:60771..61212Clytia hemisphaericaexon
TCONS_00055879-exon-scaffold_264-1510915933:60394..60470TCONS_00055879-exon-scaffold_264-1510915933:60394..60470Clytia hemisphaericaexon
TCONS_00055879-exon-scaffold_264-1510915933:59946..60049TCONS_00055879-exon-scaffold_264-1510915933:59946..60049Clytia hemisphaericaexon
TCONS_00055879-exon-scaffold_264-1510915933:59270..59447TCONS_00055879-exon-scaffold_264-1510915933:59270..59447Clytia hemisphaericaexon
TCONS_00055879-exon-scaffold_264-1510915933:58420..58993TCONS_00055879-exon-scaffold_264-1510915933:58420..58993Clytia hemisphaericaexon
TCONS_00055879-exon-scaffold_264-1491911889:60771..61212TCONS_00055879-exon-scaffold_264-1491911889:60771..61212Clytia hemisphaericaexon
TCONS_00055879-exon-scaffold_264-1491911889:60394..60470TCONS_00055879-exon-scaffold_264-1491911889:60394..60470Clytia hemisphaericaexon
TCONS_00055879-exon-scaffold_264-1491911889:59946..60049TCONS_00055879-exon-scaffold_264-1491911889:59946..60049Clytia hemisphaericaexon
TCONS_00055879-exon-scaffold_264-1491911889:59270..59447TCONS_00055879-exon-scaffold_264-1491911889:59270..59447Clytia hemisphaericaexon
TCONS_00055879-exon-scaffold_264-1491911889:58420..58993TCONS_00055879-exon-scaffold_264-1491911889:58420..58993Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_264supercontigscaffold_264:58420..61212 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.252035	0.0274188	0	0	0.121345	0	0.051956	0	0.0494172	0	0	0	0	0	0.155	0.787856	0.318078	0.18274	0	0	0.183014	0.160519	0.0813603	0	0	0	0	0	0.113534	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055879 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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