TCONS_00005440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005440
Unique NameTCONS_00005440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length928

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005440 ID=TCONS_00005440|Name=TCONS_00005440|organism=Clytia hemisphaerica|type=transcript|length=928bp
ttttattttcttttgaaagtgTTAATCCTTTTGAGGACCTCTCGAAATGA
GGTACAATAAATAGAGCCGGACTTGACAGACTTGAGTCTCGTTCTTAAAC
TTGTATGCAAACCTTAATACAGCCTCATCTCAAATAGTATAAAACCAAGA
ATACACCTGTTAAAAAGCGTTATGGCAAACTCAAATTCCCTTCTACTTGT
TCTGGTGGTGATCTGTTTGTCAACTATGGTTGTGGTTAATGGACGACCGG
TCAATGTAGATTGTAAACGGTTAAAAGAACTCAATTGCAATCAAGGATTG
ACTGAGAAAGAACtcAAGGAATTATTCAAAGAGAAATTCGAGCAACACGT
TCAAGGAAAATTAAAATCTCTAATAAATATGACTCAATTACAATCCAAGA
TTAAAGTCAATTTGATGAAGTCTGGCTGAATCCCCCCTTCAAGTATTATT
GGTTTGAAGATAAGCTAATCCTTGGAACGAAATGAATGATTTCTTTGCTT
CAACTGTAACCACACCATAGATCTTCCCGTAGCTATATGGTTGCTCAAAA
GAACAAACTTGCCAACTCTAAACGCTACAAAAAGAGTCGACTTTACTACA
GGGAGGAATAACCTAAAACCAGTACCTAAGAGGAAATCAACGCAACATTT
TACATCAATATTTCATGGTGATGGTGATCCAGGCTCCTCCTGGGTTAATT
GATCCCTAATGGAAGTTGAAGATATAAGAGTTGAGAGATGACGCAATTGA
ACTTCAAATATAATGTGTAGATagatattttacaatttttttcattactC
AATGATAAGGTTATATGCCTTACCTAGTTTTTACTtgtgttttgacattt
tacgaatttcacattttaaaaatttgaatttttcttgtaaatagTAGTTA
GCATTTTATACTTAGCCCTATATAccac
Run BLAST on NCBI

transcript from alignment at sc0000053:755911..757189+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005440 ID=TCONS_00005440|Name=TCONS_00005440|organism=Clytia hemisphaerica|type=transcript|length=1279bp|location=Sequence derived from alignment at sc0000053:755911..757189+ (Clytia hemisphaerica)
ttttattttcttttgaaagtgTTAATCCTTTTGAGGACCTCTCGAAATGA
GGTACAATAAATAGAGCCGGACTTGACAGACTTGAGTCTCGTTCTTAAAC
TTGTATGCAAACCTTAATACAGCCTCATCTCAAATAGTATAAAACCAAGA
ATACACCTGTTAAAAAGCGTTATGGCAAACTCAAATTCCCTTCTACTTGT
TCTGGTGGTGATCTGTTTGTCAACTATGGTTGTGGTTAATGGACGACCGG
TCAATGTAGATTGTAAACGGTTAAAAGAACTCAATTGCAATCAAGGATTG
ACTGAGAAAGAACGTAAGTTTTATTCTTAATACCTATTTCAGATTCTTTT
CAGTGAAATTATATTGATTCAACAGCAATCGGGacctgaaaatttttaac
atcattttgaaaatacaaaCCTCTGACTGATCAGTAACAGTAACTTAGTT
AAAAGGTTACTTATTACTTATTGACTTGTATTTTTATGCTTGAGGATTTC
GCGACCAgagaatatttcgatttttgcgAATGTAACCTAGATTTTCGAGA
TGGGATCCCCGTGAAGACTGTGAACTGTATGTAATCAGTCACAAAAGGCA
GTAAAGTATATAAAGTACCCGATTTGCTCAGTAGAATAACCattcgtttt
tattttgtttttagtcAAGGAATTATTCAAAGAGAAATTCGAGCAACACG
TTCAAGGAAAATTAAAATCTCTAATAAATATGACTCAATTACAATCCAAG
ATTAAAGTCAATTTGATGAAGTCTGGCTGAATCCCCCCTTCAAGTATTAT
TGGTTTGAAGATAAGCTAATCCTTGGAACGAAATGAATGATTTCTTTGCT
TCAACTGTAACCACACCATAGATCTTCCCGTAGCTATATGGTTGCTCAAA
AGAACAAACTTGCCAACTCTAAACGCTACAAAAAGAGTCGACTTTACTAC
AGGGAGGAATAACCTAAAACCAGTACCTAAGAGGAAATCAACGCAACATT
TTACATCAATATTTCATGGTGATGGTGATCCAGGCTCCTCCTGGGTTAAT
TGATCCCTAATGGAAGTTGAAGATATAAGAGTTGAGAGATGACGCAATTG
AACTTCAAATATAATGTGTAGATagatattttacaatttttttcattact
CAATGATAAGGTTATATGCCTTACCTAGTTTTTACTtgtgttttgacatt
ttacgaatttcacattttaaaaatttgaatttttcttgtaaatagTAGTT
AGCATTTTATACTTAGCCCTATATAccac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003099XLOC_003099Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005440-exon-sc0000053-1491911889:755911..756223TCONS_00005440-exon-sc0000053-1491911889:755911..756223Clytia hemisphaericaexon
TCONS_00005440-exon-sc0000053-1510915933:755911..756223TCONS_00005440-exon-sc0000053-1510915933:755911..756223Clytia hemisphaericaexon
TCONS_00005440-exon-sc0000053-1575043694:755911..756223TCONS_00005440-exon-sc0000053-1575043694:755911..756223Clytia hemisphaericaexon
TCONS_00005440-exon-sc0000053-1491911889:756575..757189TCONS_00005440-exon-sc0000053-1491911889:756575..757189Clytia hemisphaericaexon
TCONS_00005440-exon-sc0000053-1510915933:756575..757189TCONS_00005440-exon-sc0000053-1510915933:756575..757189Clytia hemisphaericaexon
TCONS_00005440-exon-sc0000053-1575043694:756575..757189TCONS_00005440-exon-sc0000053-1575043694:756575..757189Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:755911..757189 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.465794	0.105165	0.190315	0.356342	0.0415805	0.0515042	0	0	7.44937	6.13446	5.74383	2.25513	0.259292	0.265766	0.419623	1.64665	0.381662	0.279242	0.113152	0.205743	0.21191	0.0472812	0	0	0.109534	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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