TCONS_00055910 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055910
Unique NameTCONS_00055910
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055910 ID=TCONS_00055910|Name=TCONS_00055910|organism=Clytia hemisphaerica|type=transcript|length=686bp
TTGAAATTTAATCTTAGTATTCAgttatcagaaaaaagtaacacTTTTGG
TTAATTATGTGTAACCTAGGTAACGTATTCTATCTAAGAACTCTCAAAAG
GGCATAACAGTTAACTTGCTCTCGTATATTGCAATATCTGATagttgaat
tttcatttgattgaTATATTGTATactattttttttgtaatatgTCGTTG
GGCGACGCTCGGATTTTTCACAACAGAATATAATTTAATTCACGATAGAT
TGACTCTGGACATTTTCATGTTAACACAATTTCCATTTGACATGAACGTA
TGGAAAAAGTAGTTTTACGATTTATTTGCATGGTTCTTGAAAAAGAATGA
CACGATAGTGGGATTGAACTTGACTGTGATGTATGGTGTGCGAAGGGGCT
GTCATCTCACTGTTTGATGGATTGAATTTAAGGTGAAATGAAAGACACGC
GATAAAGGAATTAAGTAGGAAGATCTTTAAGGAAGTTAGGCTTGCATGGA
ATATGTAGAATGCATTTGATTTGTAGCATTTGCAGTGAAAAGTTGAGTTT
TTAACGAGAAGGCAAGGGAGAGAAATATTTCAACTTTATGATAATATACT
CATGTCTGACAATCTAAGATTGGGTTGTAAGGTTGATCCGCCATATCGTA
TAGTTGGATTGAAGTTGAAGTCAGATAGAAATCGAG
Run BLAST on NCBI

transcript from alignment at scaffold_265:69510..70195

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055910 ID=TCONS_00055910|Name=TCONS_00055910|organism=Clytia hemisphaerica|type=transcript|length=686bp|location=Sequence derived from alignment at scaffold_265:69510..70195 (Clytia hemisphaerica)
CTCGATTTCTATCTGACTTCAACTTCAATCCAACTATACGATATGGCGGA
TCAACCTTACAACCCAATCTTAGATTGTCAGACATGAGTATATTATCATA
AAGTTGAAATATTTCTCTCCCTTGCCTTCTCGTTAAAAACTCAACTTTTC
ACTGCAAATGCTACAAATCAAATGCATTCTACATATTCCATGCAAGCCTA
ACTTCCTTAAAGATCTTCCTACTTAATTCCTTTATCGCGTGTCTTTCATT
TCACCTTAAATTCAATCCATCAAACAGTGAGATGACAGCCCCTTCGCACA
CCATACATCACAGTCAAGTTCAATCCCACTATCGTGTCATTCTTTTTCAA
GAACCATGCAAATAAATCGTAAAACTACTTTTTCCATACGTTCATGTCAA
ATGGAAATTGTGTTAACATGAAAATGTCCAGAGTCAATCTATCGTGAATT
AAATTATATTCTGTTGTGAAAAATCCGAGCGTCGCCCAACGAcatattac
aaaaaaaatagtATACAATATAtcaatcaaatgaaaattcaactATCAGA
TATTGCAATATACGAGAGCAAGTTAACTGTTATGCCCTTTTGAGAGTTCT
TAGATAGAATACGTTACCTAGGTTACACATAATTAACCAAAAgtgttact
tttttctgataacTGAATACTAAGATTAAATTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035206XLOC_035206Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055910-exon-scaffold_265-1491911889:69510..70195TCONS_00055910-exon-scaffold_265-1491911889:69510..70195Clytia hemisphaericaexon
TCONS_00055910-exon-scaffold_265-1510915933:69510..70195TCONS_00055910-exon-scaffold_265-1510915933:69510..70195Clytia hemisphaericaexon
TCONS_00055910-exon-scaffold_265-1575043694:69510..70195TCONS_00055910-exon-scaffold_265-1575043694:69510..70195Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_265supercontigscaffold_265:69510..70195 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0725291	0	0.0823895	0.401205	0.237778	0.0956231	0.0895212	0.125352	0	0	0.247673	0	0	0.0422336	0	0	0	0.0790642	0	0	0	0	0.077531	0	0	0	0	0.0825525	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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