TCONS_00055997 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055997
Unique NameTCONS_00055997
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length248

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055997 ID=TCONS_00055997|Name=TCONS_00055997|organism=Clytia hemisphaerica|type=transcript|length=248bp
GAAGGAGGAGATTCGAGTGCTTCCACATCATCAGAATCAGAGAGCGATGA
AAGTGAAACAGAAGATGGCAATGATATGAAAATTTCACAAAGTGATGCGC
AGAAAAACATGGCTGATAATGGTTCAATGATGTCAAAATTCTTTTCAACG
CGAAGTTGGCGCAAAAGAACTACAGCACTTTATATACGAAGTTAGAAAGC
TCACAACTGAGGTACCATTATGGTTCGGGAAAAAGAAGACTGAAACCG
Run BLAST on NCBI

transcript from alignment at scaffold_266:252620..253845-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055997 ID=TCONS_00055997|Name=TCONS_00055997|organism=Clytia hemisphaerica|type=transcript|length=1226bp|location=Sequence derived from alignment at scaffold_266:252620..253845- (Clytia hemisphaerica)
GAAGGAGGAGATTCGAGTGCTTCCACATCATCAGAATCAGAGAGCGATGA
AAGTGAAACAGAAGATGGCAATGATATGGTATGTCCTTTTTCACAAGTAC
TCAGGACGGTTTAATAGAGTTATTTCTCACGTTAGTTATTTACGTAGTTT
TGGACTTCCATACTCAGGGACAGGGACCTATAGGATAAATACAACTCATG
CACTATTTGATAGCATCAAAAGAGAAGGATGGTGGGTTATGGGGATGCTA
ATAAATAAAGGCCAAAATTCTTGGTGAAATTATGGCACTTATTTTCAATA
TTTATCAAAATACAAAAAGAGTTTTTTCCTTTTTCTATACTAAAGCTCCT
ATCCATAATTTAGTTGATATACCATGATTGACGTATATTTTGATTTGCAG
AAAATTTCACAAAGTGATGCGCAGAAAAACATGGCTGATAATGGTAACAC
TCTTTTGTATTATATTATCGAAGCTAAACGTACTTTCATTAATACTTTTA
TCGAACTACATTACGGTCGAATGTTCAAATTGTTCTCTTCTTAAAGGTTT
TATTTTTTACATAAGTGTTCCCGTTTCATATCAGCCACATGTTTCGTATC
AGGACAGTGTCTGCCTATTGTTATATTGTGCTGATATAAGCAAAAATATG
TTTTCTTTTCCTCTTTCTGACCAATCTTGCTCCACATCTGTGTAAATTCA
ATATCAAAAAGCTTATAAATTAAAATTGACGAGTAAGCAAACGACATCAC
TCCTATTTTCCATTGGTAAACGTTATTATATTTCGTTTTTATAACTCGAA
GCCCTCGAACTCGCTCCTTGATTTAAAAGACTCCTGATCTGAGTTATAGA
GAGACTTTAGAACTTCATACTGTTTATGTTCTTTAGGTTCAATGATGTCA
AAATTCTTTTCAACGCGAAGTTGGCGCAAAAGAACTACAGGTTAGAAATA
CTCGTAGATAACAGTAAACATAGCATATCCCATCCTCTAAATTCACTTAT
TCAGATTTCTTGTATAAAAATAAGTATAGTTTAATTGATGCGGAATTATT
GTAGCGAATGCTCTGCTGAGGCATGGCTGTGGACAGCATTAATAGATTTG
GAGACAAGTTGATGTACGAGTATTGTAATATCTTCAGAATTTTCTTCTTA
TAGCACTTTATATACGAAGTTAGAAAGCTCACAACTGAGGTACCATTATG
GTTCGGGAAAAAGAAGACTGAAACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035241XLOC_035241Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055997-exon-scaffold_266-1575043694:253768..253845TCONS_00055997-exon-scaffold_266-1575043694:253768..253845Clytia hemisphaericaexon
TCONS_00055997-exon-scaffold_266-1575043694:253403..253445TCONS_00055997-exon-scaffold_266-1575043694:253403..253445Clytia hemisphaericaexon
TCONS_00055997-exon-scaffold_266-1575043694:252906..252959TCONS_00055997-exon-scaffold_266-1575043694:252906..252959Clytia hemisphaericaexon
TCONS_00055997-exon-scaffold_266-1575043694:252620..252692TCONS_00055997-exon-scaffold_266-1575043694:252620..252692Clytia hemisphaericaexon
TCONS_00055997-exon-scaffold_266-1510915933:253768..253845TCONS_00055997-exon-scaffold_266-1510915933:253768..253845Clytia hemisphaericaexon
TCONS_00055997-exon-scaffold_266-1510915933:253403..253445TCONS_00055997-exon-scaffold_266-1510915933:253403..253445Clytia hemisphaericaexon
TCONS_00055997-exon-scaffold_266-1510915933:252906..252959TCONS_00055997-exon-scaffold_266-1510915933:252906..252959Clytia hemisphaericaexon
TCONS_00055997-exon-scaffold_266-1510915933:252620..252692TCONS_00055997-exon-scaffold_266-1510915933:252620..252692Clytia hemisphaericaexon
TCONS_00055997-exon-scaffold_266-1491911889:253768..253845TCONS_00055997-exon-scaffold_266-1491911889:253768..253845Clytia hemisphaericaexon
TCONS_00055997-exon-scaffold_266-1491911889:253403..253445TCONS_00055997-exon-scaffold_266-1491911889:253403..253445Clytia hemisphaericaexon
TCONS_00055997-exon-scaffold_266-1491911889:252906..252959TCONS_00055997-exon-scaffold_266-1491911889:252906..252959Clytia hemisphaericaexon
TCONS_00055997-exon-scaffold_266-1491911889:252620..252692TCONS_00055997-exon-scaffold_266-1491911889:252620..252692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:252620..253845 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.9186	0	1.74336	4.95253	1.06712	1.68651	4.25579	3.11873	4.49182	5.84354	12.3386	9.67651	13.0501	16.9733	4.14582	2.81543	1.07264	5.25182	10.6798	5.72259	0	1.68878	0	0	23.9905	7.44589	4.40058	2.18643	5.32046	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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