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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056002 ID=TCONS_00056002|Name=TCONS_00056002|organism=Clytia hemisphaerica|type=transcript|length=170bp
GTGTCACAGGACaatttacaaaaatacttttctTTGAGGTAATGAAAGAA
GAAGAGGTGAAATTTATTGTTTGTGACGAaGAGGCTGACTTAATGACTGC
CGCTGTGGCAAATCAACTTGGAGGGTATGTTGTGAGTAATGATGCTGATT
TCTTCTTGTACGAAGTTGGT Run BLAST on NCBI transcript from alignment at scaffold_266:264975..267910- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056002 ID=TCONS_00056002|Name=TCONS_00056002|organism=Clytia hemisphaerica|type=transcript|length=2936bp|location=Sequence derived from alignment at scaffold_266:264975..267910- (Clytia hemisphaerica)
GTGTCACAGGACAATTTACAAAAATACTTTTCTTTGAGGTAATGAAAGAA
GAAGAGGTGAAATTTATTGTTTGTGACGAGTAAGTTTTCTTTTATTTGAG
TAAAGTTAGATAAGTAGCAGACCAAAAAATAATTGATTTCATTCTTAAAA
AGGAATGATTGGCAATTTTTCATTTTCAGCAGTTTTCAGATAATATGTTA
TGGATTGTTTTGTTCTCAGAAAAGTGATCTGTAAGGTTTACCTGAGTCTG
TTAAATGACGTGCCTTACGTGCCCACGCGCCCTACGCGTCTGAATTTTGA
CGCGCCCTCTTACGCGCCCTAAATTTTTGAAGCGTCTTACAGTATTACGA
CCTTAAATTTTTGTAAATTTTGACGTGATTTTTATTGCCCCCCGGCACGT
GAAAGGCGAATGTTCTGCAAAAAATTATTCAGAAAAAAAGACGACAACAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTTAGCATTCTCTATGAGACAGAAGTGATTTTAT
TTCTTTATCATTTATCATATTTATCAAAAACACTTCGTAAAAATTTATTT
ATAGACTCAATGACAATGGTTTTATGAATATTTCATTTTCTGGTTGAATT
CTCAGTGTGTTATTTTCTTGCGAGTTCATACTTAATTCTCAACTTCAGTT
GAGCTAGAATCTGAGAATGTCTATGTGTGTCTGTCTGTGTGTCTGTGTGT
CACCAAAACTTTGGGGCAGGCTGGAGACTTCAAAAATGGTCCGATTGGGC
TGAAATTTTGCACACTTGATCCTTGGGCGAATCCCTGGGGGTGTTTTTCT
CATTTTTTCAAAATTTTGATTTTTGGGGCCTGGGGACGAGTTTTTCGCAA
AAACGAGGCTAAAACTTTGGGGCAGGCTGGAGACTTCAAAAATGGTCCGA
TTGGGCTGAAATTTTGCACACTTGATCCTTGGGCAAATCCCTGGGGATAT
TTTTTTTCATTTTTTCAAAATTTTAATTTTTGGGACCTGGGGACGAGTTT
TTCGCCAGAAACGAGGCTTAAACTTTGGGGCAGGCTGGAGACTTCAAAAA
TGGTCCGATTGGGCTGAAATTTTGCACACTTGATCCTTGGGCAAATCCCT
GGGGATGTTTTTTCAAAATTTAAATTTTTGGGGCCTGGGGACGAGTTTTT
CGTCAAAACGAGGCTAAAACCCAAAATGCTATAATTTTTCTTAAGCCATT
AAGTTTACAATTGGGCCTACGAATGATTTCAAAGATACTGAAGTTGAGCC
AGTGCGGTTAGCACGTTCGACAGTTGATTATGCATTATTATTTTCCAAAT
TTTAGCTAAATTGTGCTTTTAAGCGTTATGCTTATAAATAAATAAGAGTG
TAACGGTAGGGCGATTACTCAGGCTAAAAGTAGCATTCCTTATTAAATTA
TCATAAATTCAGGGTTATGGGGGCATTTATAGCGATAGTTAATGCTGCTT
ACCATGCATCTTTAAATCAATACACAATAGTTTTAAAAGTATGCTTACGC
ATCAGCCCTATCTGACCAATAATAATGTAATGCCTATGTATACATATTCT
AACATTCTTCAAAAAGAAGTAAACTATTTTTGACAAAAGCTTCGGCATCA
CATAATTAAAGAAAAATTGTTAGGAATTGTAGGAGATTCAGATTGAAGGA
AACTAATTGAAAGTTTTGTTACGAAAATGATGCTTGTAAAAACAAGTATG
CTATGTTTGATTTATGAAAAAAGTTATTACCGAAAGCCAAATTCCCTTAA
ATCAAAAGTTATTGATTGGTTTCTTATAAAGACGTTGCTTTTAATAAAAA
TAAATATGCCCACGTTAAGCACAGTCCCTTACTTGCTTTGAAAATACTGC
TTACCGAAAGCCTAATCCCCTCAAATCAAAAGTTATTGATTGGTTTCTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTGGTTTCTTATAAAGAAGATGCTTATAAGAAAAATAAATATGCTGACA
TTAAACACAATTCCTTACTTGCTTTGAAAAGAACTAATAGCGAGGTTAAA
TATTGGTTTTGCTCTAGAACACACGTTTCCGTTCAGTTTCTCGTTCTAGA
GCAAATCCGATATTTTTGCCCGGGGTATGTCGAACGAAGGCTTAAAAAAT
TCGTTTGTCGTCCTGAGTTATCTACTGATACTTAACCTCAGGGCGCGTCG
GTAATAAGGCAAGTAAGTAAGGCGCGTCAAAAATTTAGGGCACATCGATA
ATAAGGCGCGTAAGAAGGTGCGTCAAAACTTAAAGGCGCGTCGAAATTCA
GGCGCGTAGGGCGCATAGGGCGCGTAAGGCGCTTCATTTAACAGACTCGG
TTTACCTTGCTTTATTTAAATTGGGGAGGGTTCCGTCTCTTTCTCATTCT
TAATTCTTAATCACCCATTGTTTGACCATTTTCGCTTATTTTTAAAAGTG
AAATTTTATTTTCAAAACTGATTACTCAAAAACTACTGAACCAAATTCAT
AAATTAACAGCTCAAAATATAAGTTAGATCTTTCTCTTTCTTATGACATT
ATATTCAAGTTCATATCTTGATCAATTCTGCTCAAAGGTGTTGAAATACA
TGTCTAGCAAAAGGATTCTTCCAATGTCTTATTTTGCATTTTTAGAGAGG
CTGACTTAATGACTGCCGCTGTGGCAAATCAACTTGGAGGGTATGTTGTG
AGTAATGATGCTGATTTCTTCTTGTACGAAGTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056002-exon-scaffold_266-1575043694:267832..267910 | TCONS_00056002-exon-scaffold_266-1575043694:267832..267910 | Clytia hemisphaerica | exon |
| TCONS_00056002-exon-scaffold_266-1575043694:264975..265065 | TCONS_00056002-exon-scaffold_266-1575043694:264975..265065 | Clytia hemisphaerica | exon |
| TCONS_00056002-exon-scaffold_266-1510915933:267832..267910 | TCONS_00056002-exon-scaffold_266-1510915933:267832..267910 | Clytia hemisphaerica | exon |
| TCONS_00056002-exon-scaffold_266-1510915933:264975..265065 | TCONS_00056002-exon-scaffold_266-1510915933:264975..265065 | Clytia hemisphaerica | exon |
| TCONS_00056002-exon-scaffold_266-1491911889:267832..267910 | TCONS_00056002-exon-scaffold_266-1491911889:267832..267910 | Clytia hemisphaerica | exon |
| TCONS_00056002-exon-scaffold_266-1491911889:264975..265065 | TCONS_00056002-exon-scaffold_266-1491911889:264975..265065 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:264975..267910 - |
Blast
The following BLAST results are available for this feature:
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