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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056009 ID=TCONS_00056009|Name=TCONS_00056009|organism=Clytia hemisphaerica|type=transcript|length=875bp
CTAAAGAACAGTTTTTCTGAACTGAATTTTCTACTGTGTGAGTGTGACCA
AGATGGaagaaaatccataatggctacCCAAGCGAGAAAGAAAGTGTATC
AAAATCCTAGAAAGTTTGTTTTTTCTGTTGGACTATTTTCaggttttctt
tgatttcatgaattaaaatggCTAGTGAAGGAGGAGAAACAGCGACTGCT
TCAGATTTGGAACAGCAATTTCACAGTAAAGGTTATGAATATCTAGATCA
TCCAGCAGATGTTCAAATCCACTCATGGGGAGCAAGTCTCAAAGAGGCAT
TTGAAGAAGCAGCAGTAGGCATGTACGGAATTATGACAGAAATCGAAACA
GTTGACCCAATACAAGAAGAAAATGTAGAGGCAAATGGACATGACATTGA
ATCACTACTATTCAATTTCTTAGATGAAtgtctttttgtattttgtgcAG
AGCCTTACATTTGTGCTTGTCGTGTAGAAATAACAGAATTTGATGAAACT
AACTTTACTATAAAAGCAATATTGAGGGGAGAACAATTTAACCTGGATAA
ACATCCGCAAGGGACTGAAGTAAAAGCAATTACATACTCAAATTTGCAAA
TTCATAGGAATGAAAAAGACTTTGAAGTCTATGTTATTGTTgatatttag
tatattttttaaaattttatgtcttAGAATCTGATTTTCAATTGTTTAAG
TGTGCTATAATTTGCAGATCCAAAATGACAAATCAATTTCAATATCAAAT
TGTCTACATTGTAATAACAACATCATCAAATACTACAAAATACCACTATC
TAACTTCTATATTATTGATTTTAAGAAGTTCTTTTCTTAGAAAAGGTATT
ATTTCTGCTtactttttaaaataac Run BLAST on NCBI protein sequence of TCONS_00056009-protein >TCONS_00056009-protein ID=TCONS_00056009-protein|Name=TCONS_00056009-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MASEGGETATASDLEQQFHSKGYEYLDHPADVQIHSWGASLKEAFEEAAV
GMYGIMTEIETVDPIQEENVEANGHDIESLLFNFLDECLFVFCAEPYICA
CRVEITEFDETNFTIKAILRGEQFNLDKHPQGTEVKAITYSNLQIHRNEK
DFEVYVIVDI Run BLAST on NCBI transcript from alignment at scaffold_266:347233..353893- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056009 ID=TCONS_00056009|Name=TCONS_00056009|organism=Clytia hemisphaerica|type=transcript|length=6661bp|location=Sequence derived from alignment at scaffold_266:347233..353893- (Clytia hemisphaerica)
CTAAAGAACAGTTTTTCTGAACTGAATTTTCTACTGTGTGAGTGTGACCA
AGATGGAAGAAAATCCATAATGGCTACCCAAGCGAGAAAGAAAGTGTATC
AAAATCCTAGAAAGTTTGTTTTTTCTGTTGGACTATTTTCAGGTTTTCTT
TGATTTCATGGTAAGAAGATTGTTCTTTTCTTTTGCTCGAAAGATCTATC
CCAGAAAAAGAAAAACTTAATATAGATCCATGGCTTCGTTATATCAAAAT
AGTTTCCTCTGCCATGCTCATGCATGATACGCGGTGCAGTAGTGTTTGTG
TTGATAGATGGCATGGGATGTAGCCATAAAGTTTGCCCCCTTGTGTCTAC
ACATAGCANTTAGCATACATAGAAAAAAAGTGCGAAGGGTTCAAAGTTCA
CGGAAAAATGAAACATTTGGTTTGACGTCAACGAAAGTTGCATGACTTCT
GGAGTCGCTAACTTAGTCAAAATGGGTGTCACATGGCTTGGTAGCAGGTT
TTAGGTGCCCCTAAGAATTCAGGTGACCCCTAAGATTTAGGTAACCCCTG
GTTGCCAAATATTTTCGGTGACCCCTAAGCCAATGACACGTCAAATTTTT
TCGAAAATCCTTTTCATTCAGACAATCAAACAAATACAATAGTTAGTTTA
GCTTATTGCTAGATAGAATAAATGCCCTACTAAGAAATAGGAAATAAGCT
AATTATTGCCAGATTATCAAGGTTTTGTAAGTCAGGGGGCAAATCCCTTG
TCAGACAGATTTTTTATCTAAGTAATGCAACATAATTAAAGAATTTTTAC
AGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA
GATACATAGATACATGGATGCGTAGATATGTAGATACATAGATACATGGA
TGTGTAGATATGTAGATACATAGATGGGAACGGCTTCAATGAATCGGCTG
TCCTTGGCTGAACGCTCGTCTAAAGAACAGTTTTTCTGAACTGAATTTTC
TACTGTGTGAGTGTGACCAAGATGGAAGAAAATCCATAATGGCTACCCAA
GCGAGAAAGAAAGTGTATCAAAATCCTAGAAAGTTTGTTTTTTCTGTTGG
ACTATTTTCAGGTTTTCTTTGATTTCATGGTAAGAAGATTGTTCTTTTCT
TTTGCTCGAAAGATCTATCCCAGAAAAAGAAAAACTTAATATAGATCCAT
GGCTTCGTTATATCAAAATAGTTTCCTCTGCCATGCTCATGCATGATACG
CGGTGCAGTAGTGTTTGTGTTGATAGATGGCATGGGATGTAGCCATAAAG
TTTGCCCCCTTGTGTCTACACATAGCATAGGGCAGTAGGGCTGTGTAATA
GCAGCCCTATAGGGAATAGGGGCAGGGTTGGGAGCTATTATATATAGGGT
CTGTAAATTACCGTGAGTGGTCCTAAATCCGACAGCCCTGTGCCTAAAAT
CCGACCCCCCAAATAACTGCTATGAAAAAAATTCTATGTTTACAAACATT
CCCTCTCCAAGTTGAACAATAAACTATATTGCGAGAACTCTCGAATGAAA
ANGACCCCTAAGCCAATGACACGTCAAATTTTTTCGAAAATCCTTTTCAT
TCAGACAATCAAACAAATACAATAGTTAGTTTAGCTTATTGCTAGATAGA
ATAAATGCCCTACTAAGAAATAGGAAATAAGCTAATTATTGCCAGATTAT
CAAGGTTTTGTAAGTCAGGGGGCAAATCCCTTGTCAGACAGATTTTTTAT
CTAAGTAATGCAACATAATTAAAGAATTTTTACAGATATATAATATATTA
GATACCAAATTTTCAGTTTTTTAGCATTGCTTAGATTGGGCGGTTCAAGT
TATAGTCCGTTAACCCCATGTGAACAACATGGATTTTTCGTAACAATTTA
CTTTTGAAAAACTTCAGGATTTCCGTAACATTCAAGATTTTTTACGAGAA
AATCTTGGATTTTCCAAAACTTGGCAAGAAAATAGAGCAAATTTTATGGA
TTTTCCAATACATATGACTAAATAATGAGGAAAAATCCTGGATTTCCGAA
ACCTTTTTCAAATTTCTCAGGATTTCCAAGTGAAAAAAAATCCCAAAAAC
CCTGTCGTCCACAGCCCAATAAAATATAAGATGAGAAAGTGCCAACCTAT
GGTCTGGTAGGCTGCTTATGATGAAAAGCAAGTTCAGAAAAAAATCACCA
AACAGAGAATCTAGCCTCCAGGCAGATCCATCTGAAAAAATTTAGGTGAC
CCCTAACATGGTTAGTCCCCCCTAGCCACAGGCCAAAATTAGGTACCAAT
CGCTGTTCGACCTTTTAGCCCCCCCCCTCAGGCCAGGGGGGGTTCCAGCC
ATGTGTCAGGTATGTGCGAGCCATAAGGGTACCTTTTCTCATTCCTCAAA
AGTCTCTCAAAGGGGTACAAATTCAAAAGTTAGTCTCTGAAAGGGTCCCA
AAATCACGAAAGTCAAAAATTTTGATCAAAAATTGATGAAAATCAAACCA
AGATTTGGAAAAAATGGACCAAAATTTAGGAAAAAGTCTCTCAAAGGGTC
CCAAAATCACGAAAGTCAAAAATTTTGATCAAAAATTGATGAAAATCAAA
CCAAGATTTGGAAAAAATGGACCAAAATTTAGGAAAAAGTCTCTCAAAGG
GTCCCAAAATCCCCAAAATTTTGTCTCTCAAAGGGACGATTTTCGATTTT
CGGCTCGGACATACCCGTCCCCTTGCAAACCTAGTCCCCCCCCCCCCGGA
AAAATAATTACCCAATATTATTGTGAATCTGTTGCTCGTGTTTAAAACAT
TAACAATTTTTTAATAAAAAATTATGCTTTTTATAAGAAGCAATTAATGT
TTTGGCTCAATTGGTTCAGTGTAATCTCTCAGTTTAGTTGACACTTTGGT
ATCTTCATTGCGTTACAGTACAGCAAAAAGTTTGTTTTTATTTCAGTTTG
TATCTTTGAAAGACCCCATCGGATTTGGGGAGGGTTGTCGGTAGACAGGA
GGTTGTCGGATTTAGGACCACTCACGGTACACTCTATAAGTATAAGTTTG
TTTTGTTTTCTTTTAACCCAACTGGTATGATTTTGCTTTGGAATCCATGC
GTTTGGTGGTTCGAGCAGTTGACGCTTGGGAGATTATATTAGAATCAGTT
TTGAAAAGAAAGAAAATAACTCAGAAGCAATTCAAAGACTCAGACATATT
CAAAAGTAGAATGAAAGATTGGAAATAGAGAAAGTACAGTAACTTGGTCG
ACGACATCCCTCTTCTAATATTGTGGGGAGTCATTTACAATCTACACAGC
ACCGTTGAATGTCAAACATACCTCATCTAATTCCGACACTCTTCTTTATA
GGATGGGAATAATAGGGAGGTCGGAATCGCTGATTGAAACTATATATATT
CTTTGCTTAGAGGTCAGAGAGGAAATAACCTTTTGTCTCACAGCTCTTAA
AACTTTTGTCTTAAACAAAAATCTTAAACAATGAACTTCACTAACTTCTA
AAAGCAACTTTGCTATCAACCTTTCTACTTTTAAAATACTTAGAGATCCA
GTCCAAAAGTACAAAATATTCCTAAACCTTACCTTCTTTTTGGATAATTT
GAACTCTGGGATCATTTAATTGCATTTAAGGACAAAATAGGTTAATAGCA
AAATTGTTTTTTGGGTTTGGTAAAGCTCACCTTTGAAGATTTGAGATTTT
AGAAACACATTTTGACAGACTTAATCTTTTTAAATGGTAGATCAGGAGGT
AAAGATCTTGATGAAAGTTTGTACTATCCCCATGAAACTTTCCAAAAACC
AAGATTTCATTGTCTTAGAGGACTCATTTTCTGTTCAATCTTGATCAAAA
ATTGTTGCTTTTAACAGCATTGTCAAGATTTTTAGGATTTTAGAGTTAAG
ACGGATTTTGAGCTAGCCCTAATATTTATAAAAGAAAGAAAACGGGTTCC
AACTTTTGATAAATTGTTGCACTATCTATAGGATGCTTTCACAAAATTAA
GAAACATGTATCAATGGGTACTCATTTCGGGCAAAAATTTCAGCCAAAAA
TGTACTTTTAAGTCAATTTTGCAAAATTAAGGGGGTCAGGAAAGTTAGAA
GAATCATGATTTTCAGATCAAATTTATTTTCTAACTGCCAGTTATTGGCT
GCAATATAATGACTCTAGTCAAAAAGTTGAGAAGAAAAGCCTTTTTGGCC
CAAGAAAGCACATTTGACAACTTTTTTCACCTAGTTTCATGGTTTTGATA
TGAAAGATTCATCATACAGTATCCCTTATATTACAACAAATTCAGTGACC
TAGACCCGTTTAAAATCTGTCAATGGGCTAAAATATCCCAAATTTTAGTC
ATTTTTTGAGCAATATTATATTAAGAAAGCTTTTAAATCAAGATTAAAAA
TTAATGGTAGGAGGTCACATAGGTTTTTCTTTTAATCCTGAGATACCAGA
CAATTATCTTTTAGGAACAGAGGAGTTGGAGGCCAGAAAATGTTCAGATT
TCTAGGAAAATTAGGCTAAAGTTGGTACTTTTTTAGACCTAATTGGCTTT
TCAGGCCTCTAGGGGCCAGCAAGGCTGTAATTTTTTATTGCAACCACTTC
GAATGGATAGACCAGGGACTGAACTACAAGGAATTATTATTTTGAACAGG
AACAAATTCCTCTGGGACTGGTCAGATGGCTTTAAAATACCCATAAAATC
AAATTTGTAGTGTTTTTGTGACGTCATAACTAAGAACATATCTAAAAATT
AAAAAAATCTAAGTTTCAAACTATTGGACCTGCCCCGCTCTTAAAAAACT
GGCTCTTAAGGGGTCACATATTGATTCTTCCCACGGCTAACGTCAAATTG
ACGCGAAGGGGTGGGGGGTTAAAGTCTGTGAAGCTAAGAAATTTCACCAG
AAATATTGATTTTTTGAGACGTTTATTCTGTGACAAATGTTACTTTCCAA
ATTTCTTTTCCTCCTTTTATATACCTAAGTATTTGTTTGCTTCGCTATTT
TATAGAACAATTTTAACCAAAACAAATGGACCGATGTTTATGTCTCGTGT
TCCTTTTGTTTAGATGGTCTGCGCGGCCCTTGAATTTCACGGACGGTCGG
TCTTTTTTTTGTGAAATGTCGCTATTCTGTTGATTATGATTACGGAGATA
TGATTAATTCCAGCAGCTTTGCAAAAAAAAGTTTAGGGGTTTTCAAATTA
TTAATTATTAATTTGACGTTATTCGTGGGAAGAATCAATATGTGAGTGAC
CCCTAAGTAATAGATGTCAGATGTGCTCACGAAAAAAATTGAATAATATT
GCGGAAATAGATTTCAGATTTTTTAAATTGATTATTGACTCCATTGACAA
TATTTGCCAAATAGAGCCAGAATTGGTATTTTTATTCAAAACACCTCACT
GCCAGGCCAAGACACTTGAAAACTTTTTTCTCAGTGACACTTTAAAAGGA
TTAATTTTCCATGAGACTCACAATATATTTTTGTGAATAATTGTTTTCAA
ATATTTTGTGTGAAAAAGGCAATAGTTCGGCTAATTTGAAACTCAGGTCA
AAGGTTACAGGTCAATAGGTCACATATTATAAGCCAGGGAATTTTCTAAG
CACTTTGAGCTGGAACTGTTTTTTGTAAATTTAGATTGAGTTTCTAATAA
TGCCTGAAAGGGAACATGAAGCTGGAGGTCTGGGCGCTGTTTGAAAATTA
TCTTTGTCTCTATTTGCCTTTTTTACAGTATAGCAGACTAGATTTATTAT
GATTAAGCTCTGAAACTCTAGTATACCATTTAAGTTTTGTTTTGTTTTCA
AATCAAAGTTCTACAGAACTTAAAGGTGTTCTGNCTGAAACTCTAGTATA
CCATTTAAGTTTTGTTTTGTTTTCAAATCAAAGTTCTACAGAACTTATCC
AATCTTCAAAAGTTAATACTTTGGTATAATATTTTTAAAACAAAAGAATT
AAAATGGCTAGTGAAGGAGGAGAAACAGCGACTGCTTCAGATTTGGAACA
GCAATTTCACAGTAAAGGTTATGAATATCTAGATCATCCAGCAGATGTTC
AAATCCACTCATGGGGAGCAAGTCTCAAAGAGGCATTTGAAGAAGCAGCA
GTAGGCATGTACGGAATTATGACAGAAATCGAAACAGTTGACCCAATACA
AGAAGAAAATGTAGAGGCAAATGGACATGACATTGAATCACTACTATTCA
ATTTCTTAGATGAATGTCTTTTTGTATTTTGTGCAGAGCCTTACATTTGT
GCTTGTCGTGTAGAAATAACAGAATTTGATGAAACTAACTTTACTATAAA
AGCAATATTGAGGGGAGAACAATTTAACCTGGATAAACATCCGCAAGGGA
CTGAAGTAAAAGCAATTACATACTCAAATTTGCAAATTCATAGGAATGAA
AAAGACTTTGAAGTCTATGTTATTGTTGATATTTAGTATATTTTTTAAAA
TTTTATGTCTTAGAATCTGATTTTCAATTGTTTAAGTGTGCTATAATTTG
CAGATCCAAAATGACAAATCAATTTCAATATCAAATTGTCTACATTGTAA
TAACAACATCATCAAATACTACAAAATACCACTATCTAACTTCTATATTA
TTGATTTTAAGAAGTTCTTTTCTTAGAAAAGGTATTATTTCTGCTTACTT
TTTAAAATAAC Coding sequence (CDS) from alignment at scaffold_266:347233..353893- >TCONS_00056009 ID=TCONS_00056009|Name=TCONS_00056009|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at scaffold_266:347233..353893- (Clytia hemisphaerica)
ATGGCTAGTGAAGGAGGAGAAACAGCGACTGCTTCAGATTTGGAACAGCA
ATTTCACAGTAAAGGTTATGAATATCTAGATCATCCAGCAGATGTTCAAA
TCCACTCATGGGGAGCAAGTCTCAAAGAGGCATTTGAAGAAGCAGCAGTA
GGCATGTACGGAATTATGACAGAAATCGAAACAGTTGACCCAATACAAGA
AGAAAATGTAGAGGCAAATGGACATGACATTGAATCACTACTATTCAATT
TCTTAGATGAATGTCTTTTTGTATTTTGTGCAGAGCCTTACATTTGTGCT
TGTCGTGTAGAAATAACAGAATTTGATGAAACTAACTTTACTATAAAAGC
AATATTGAGGGGAGAACAATTTAACCTGGATAAACATCCGCAAGGGACTG
AAGTAAAAGCAATTACATACTCAAATTTGCAAATTCATAGGAATGAAAAA
GACTTTGAAGTCTATGTTATTGTTGATATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056009-exon-scaffold_266-1575043694:353734..353893 | TCONS_00056009-exon-scaffold_266-1575043694:353734..353893 | Clytia hemisphaerica | exon |
| TCONS_00056009-exon-scaffold_266-1575043694:347233..347947 | TCONS_00056009-exon-scaffold_266-1575043694:347233..347947 | Clytia hemisphaerica | exon |
| TCONS_00056009-exon-scaffold_266-1510915933:353734..353893 | TCONS_00056009-exon-scaffold_266-1510915933:353734..353893 | Clytia hemisphaerica | exon |
| TCONS_00056009-exon-scaffold_266-1510915933:347233..347947 | TCONS_00056009-exon-scaffold_266-1510915933:347233..347947 | Clytia hemisphaerica | exon |
| TCONS_00056009-exon-scaffold_266-1491911889:353734..353893 | TCONS_00056009-exon-scaffold_266-1491911889:353734..353893 | Clytia hemisphaerica | exon |
| TCONS_00056009-exon-scaffold_266-1491911889:347233..347947 | TCONS_00056009-exon-scaffold_266-1491911889:347233..347947 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:347233..353893 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR023572 | Archease_dom |
Blast
BLAST of TCONS_00056009 vs. Swiss-Prot (Human)
Match: ARCH (Protein archease OS=Homo sapiens GN=ZBTB8OS PE=1 SV=2) HSP 1 Score: 149.828 bits (377), Expect = 8.552e-44 Identity = 67/130 (51.54%), Postives = 96/130 (73.85%), Query Frame = 3
Query: 225 SKGYEYLDHPADVQIHSWGASLKEAFEEAAVGMYGIMTEIETVDPIQEENVEANGHDIESLLFNFLDECLFVFCAEPYICACRVEITEFDETNFTIKAILRGEQFNLDKHPQGTEVKAITYSNLQIHRNE 614
++ YEYLDH ADVQ+H+WG +L+EAFE+ A+ M+G MT+ TV+P+Q VE G D++SLLF+FLDE L+ F A+ + V++ D+ NF +++I GE+F+L KHPQGTEVKAITYS +Q++ E
Sbjct: 28 NRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAMFGYMTDTGTVEPLQTVEVETQGDDLQSLLFHFLDEWLYKFSADEFFIPREVKVLSIDQRNFKLRSIGWGEEFSLSKHPQGTEVKAITYSAMQVYNEE 157
The following BLAST results are available for this feature:
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