TCONS_00058370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058370
Unique NameTCONS_00058370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1057

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058370 ID=TCONS_00058370|Name=TCONS_00058370|organism=Clytia hemisphaerica|type=transcript|length=1057bp
CAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATGGACATTCT
CCATAATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAGTGGAT
TTGATGATACAGCAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCT
CCTGAATATGACAGAAATGATGAAATGGACATTCTCCATAAAAAGGCTCC
GGTCACTGAAAAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCAg
cTTCTATTGCACGCCCTATTAGGAAAGCCAAGATGAGAAATTCCAAAGAG
TCGACTGACTCGGTCACAACCAGGGAACCAGGAATTCGAAAACGTGGCAA
AGAAAATACGAAGGCGAAAAAAACATCAGCCTCAAacAACAATTCAATGA
AACGCAAaagaaaagaggaaaagaaagagACTATTATGTGTACGGGATGT
GGAGAAAAGTACGACGAAAAAACTGATGATAATAGGTGGGTGCAATGTGA
TGCATGCGAACAGTGGTGTCATCTCCAGTGTTCCGGCATAAAATATCGGA
CGTCAAAATATGACACTATTAATCTTGAAAATATACCGTTTAAGTGTAGA
ACGTCGTGTTTAAAGTAAAGATTGAACAATAAAAAGTGTCTGTATTTTTA
CTCAACGTAACTACAGTAATCGTATTTTTATATGGTCGAGCTCTCTTTTG
CGAATTGGGATAAATGTTTTACGAAGACAATAACAATGGAAATAGGTCTT
GAATTCCCAAGtcaattgaatgaaaacaaaaacaaaatttgtcaAAGTCT
TTCTTGAAGGGAAATCCGGACTTTTTTGCACGTCCTATGTAATAGGCTAA
TCGCAATAAACAATTTAACCCCCATGTTGAGGAAGTCACTTTTGGAAAAT
ATTCATCCATAGTCCTTATAAAAACCCTGGTCCGgaagcttatttttcaa
atattttgttagctttttcctttgttgccatcaaaagataaaaatcaatt
tgctcAATTTTGGATCACGTTACCGagtactcctcttgggattggtttga
gcaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_31:131..3520+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058370 ID=TCONS_00058370|Name=TCONS_00058370|organism=Clytia hemisphaerica|type=transcript|length=3390bp|location=Sequence derived from alignment at scaffold_31:131..3520+ (Clytia hemisphaerica)
CAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATGGACATTCT
CCATAATAAGGCTGCGGTCACTCAACAAGATGATGATTTGGAGAGTGGAT
TTGATGATACAGCAGGTGagaaaatctttacaaatagaaattATCGTTAT
TTTTCTACGGTTCtctttttctattgttatttttcGAAGTTTATtgatta
tattatttttatctACTTAGATCAACATAAAAGAAGTTTTCAAAGGAAGA
CAGCTCCTGAATATGACAGAAATGATGAAATGGACATTCTCCATAAAAAG
GCTCCGGTCACTGAAAAAGATGATGATTTGGAGAGTGGATTTGATGATAC
AGCAGGTGagaaaatctttacaaatagaaattATCGTTATTTTTCTACGG
TTCTCTTTTTccattgttatttttcattcacTTTGAAGTTTATtgattat
attatttttatctACTTAGATCAACATAAAAGAAGTTTTCAAAGGAAGAC
AGCTCCTGAATATGACAGAAATGATGAAATGGACATTCTCCATAAGGCTC
CGGTCACTCAACAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCA
GGTgagaaaatcttttacaaataGAAATTATCGTTATTTTTCTACGGTTC
TCTTTTTccattgttatttttcattcacTTTGAAGTTTATTGATTATATT
ATTCTTATCTACTTAGATCAACATAAGAGAAGTTTTCAAAGGAAGACAGC
TCCTGAATATGACAGAAATGTTGAAATGGACATTCTCCATAAGGCTCCGG
TCACTCAACAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGT
gagaaaatcttttacaaataGAAATTATCGTTATTTTTCTACGGTTCTCT
TTTTccattgttatttttcattcacTTTGAAGTTTATtgattatattatt
tttatctACTTAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCC
TGAATATGACAGAAATGATGAAATGGACATTCTCCATAAAAAGGCTCCGG
TCACTGAAAAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCAggt
gagaaaaatttgaaaacaacaatTCTCCCGAGTAACAAACGTGTTGACTA
TAAATGGATAAACTTGAATTTcttgggtcatttattaaatttggttcatt
ggatcaaaagttatcctaatttgaaaaaaaagttacttCAGGAAAGTact
caaaaacgttgaaaatcgacctatcaaatttttattctgaaattttcagt
agcgACAGCTTTTGCACGAATAAGAGCATTACGTAGTAATTtagaaacat
aatttttttcaaacttgagcctagaaagggtttaaaatcttcatcaaaat
catttccaTTTGTAAAAGGATTAAACTTTTTAGATCTCTTTTTAGAATAT
TCACctgaaagagagaaacttttttgtggcgcaccagGTATATAATATCA
CTATATTGAAAAcgatttcattttctttcagcTTCTATTGCACGCCCTAT
TAGGAAAGCCAAGATGAGAAATTCCAAAGAGTCGACTGACTCGGTCACAA
CCAGTAAGCTTTTTTTTCATCCTATCAGATTCATGTCCCGTTTCAAgcta
tttttcttttcgcatctTGAACTTTCAAAATGTTGTCAATTATGAATACT
AACTATCAGAATTTTCCTTTGAATGTAACAAAATGAATCCTTATTATTGT
TattcttgtttttattattattgtatTCAAAGATTCTATTGTATTACTTA
TCTTCGTTAGCCGAATTGAGAAACCAGCCCATAGCAAACCCAAACCTCTG
ATAAGTTTTACATCTCTTTCAGGGGAACCAGGAATTCGAAAACGTGGCAA
AGAAAATACGAAGGCGAAAAAAACATCAGCCTCAAGTATGGTTATTTTCC
CGTTATAAATGTCCAGGGCCTAAAGTTACTCTTGAAATTGCCTTTTTGAT
TAACATAATTTTATATCTTAAACTACAGGTacatgaaattttattttcaa
aactttttagatATAATCCCTATTTCTTTTCCAATTGAGTTTGCCTCTCA
TTTTGTATGCCATTTTGAGTGGTACAATATCGAATCTTTTGTATATATGA
CAGTCAAATCTAGTATGGGAGTATTCCTCTGGCTCTGGGTCATTTATTAT
CACAATTGtaattctcttttattttagacAACAATTCAATGAAACGCAAa
agaaaagaggaaaagaaagagACTATTATGTGTACGGGATGTGGAGAAAA
GTACGACGAAAAAACTGATGATAATAGGTATGAAGAGTCGTTATGTTCGA
TTTTTTAGATCAAAAGCACTTCCTTTTTAAAGATTATACAAGGAAGACCT
TTCTTGGAATTAAAGCATACCGTTTTCTTGTGAAAATTTAGAAAGAAGAT
ATTATAGAGAATGACTGGTAGCAGTAGTTTAACCTACTTTAAACACCATC
AGTTTTTGCTTCTCAATCTCAATTACTctaataatttaattttgaatttt
gcaaaaaattttcaCCCAATACATTTTTATTCCGAAcccctgcttgttaa
tttttggaaaattttatttgaaagttatTTTCCTTGCCCTAGTTATTCTG
TATTAACCTGCTTTTCTAAAATTCTCTCTGTAATACCTACTCCTGCGAAA
GGAGAGGGGATCCAGAGGCTTCATATATAATATCTATATCTAGTATCCAC
TGGTATTCGAAGATATTTCGAATGTCTGTTTTTCATGTTTGTTCGATGTC
TTATCATATTTATTATAGGTGGGTGCAATGTGATGCATGCGAACAGTGGT
GTCATCTCCAGTGTTCCGGCATAAAATATCGGACGTCAAAATATGACACT
ATTAATCTTGAAAATATACCGTTTAAGTGTAGAACGTCGTGTTTAAAGTA
AAGATTGAACAATAAAAAGTGTCTGTATTTTTACTCAACGTAACTACAGT
AATCGTATTTTTATATGGTCGAGCTCTCTTTTGCGAATTGGGATAAATGT
TTTACGAAGACAATAACAATGGAAATAGGTCTTGAATTCCCAAGtcaatt
gaatgaaaacaaaaacaaaatttgtcaAAGTCTTTCTTGAAGGGAAATCC
GGACTTTTTTGCACGTCCTATGTAATAGGCTAATCGCAATAAACAATTTA
ACCCCCATGTTGAGGAAGTCACTTTTGGAAAATATTCATCCATAGTCCTT
ATAAAAACCCTGGTCCGgaagcttatttttcaaatattttgttagctttt
tcctttgttgccatcaaaagataaaaatcaatttgctcAATTTTGGATCA
CGTTACCGagtactcctcttgggattggtttgagcaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036772XLOC_036772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058370-exon-scaffold_31-1491911889:131..190TCONS_00058370-exon-scaffold_31-1491911889:131..190Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1510915933:131..190TCONS_00058370-exon-scaffold_31-1510915933:131..190Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1575043694:131..190TCONS_00058370-exon-scaffold_31-1575043694:131..190Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1491911889:924..978TCONS_00058370-exon-scaffold_31-1491911889:924..978Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1510915933:924..978TCONS_00058370-exon-scaffold_31-1510915933:924..978Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1575043694:924..978TCONS_00058370-exon-scaffold_31-1575043694:924..978Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1491911889:1094..1228TCONS_00058370-exon-scaffold_31-1491911889:1094..1228Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1510915933:1094..1228TCONS_00058370-exon-scaffold_31-1510915933:1094..1228Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1575043694:1094..1228TCONS_00058370-exon-scaffold_31-1575043694:1094..1228Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1491911889:1662..1733TCONS_00058370-exon-scaffold_31-1491911889:1662..1733Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1510915933:1662..1733TCONS_00058370-exon-scaffold_31-1510915933:1662..1733Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1575043694:1662..1733TCONS_00058370-exon-scaffold_31-1575043694:1662..1733Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1491911889:2003..2065TCONS_00058370-exon-scaffold_31-1491911889:2003..2065Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1510915933:2003..2065TCONS_00058370-exon-scaffold_31-1510915933:2003..2065Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1575043694:2003..2065TCONS_00058370-exon-scaffold_31-1575043694:2003..2065Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1491911889:2358..2457TCONS_00058370-exon-scaffold_31-1491911889:2358..2457Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1510915933:2358..2457TCONS_00058370-exon-scaffold_31-1510915933:2358..2457Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1575043694:2358..2457TCONS_00058370-exon-scaffold_31-1575043694:2358..2457Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1491911889:2949..3520TCONS_00058370-exon-scaffold_31-1491911889:2949..3520Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1510915933:2949..3520TCONS_00058370-exon-scaffold_31-1510915933:2949..3520Clytia hemisphaericaexon
TCONS_00058370-exon-scaffold_31-1575043694:2949..3520TCONS_00058370-exon-scaffold_31-1575043694:2949..3520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:131..3520 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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