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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056106 ID=TCONS_00056106|Name=TCONS_00056106|organism=Clytia hemisphaerica|type=transcript|length=1327bp
CCAATTTTGAATCTGAGTTGTTGGTTGCAGTTGGATTCAGGTAAAGAATG
GGTCGAACAAAGAAATCGTACGATAACAAAAGCTACTGCAAACGGTACCG
CCAAAAGGATCCAGAAAAATACCGTAAAGATGATGCAGATCGTAAACGTT
ACCAACGGTATTTAAAGAAAGTGAATAACCCCGAGCTGTATGCTGAGCTT
AAGAAAAAGAACCGAGACAGGATGCGGTTATCCCGGGAATTAAAGAAGCG
TGCTGCTCAAGAACCTGCGCCCGACCCTGAACCTGAGAGcgctttttcat
caaaacaatcaaagTATCGCAGTCTGAAGCGTGCAGAAATAAACTTGCCA
AATTcaccaaacaaaaaaatggagGTCATCGGGTCACTTGCTAAGAAGTA
CAAGCTGCGCAATGCTTTATCGAAAAAGAAAGGGAGAAAGTACGAGGATC
TAAGTGAAGAACAGGTCGAATGGTTGAAGGACTTCCTGGAACGTTCAGAC
ATGACCTATATCAATCCAGGGAAAAAAGACCATGTTTACATTGGTAAGAT
CGATGGTGTGTCCCAATATGTGCAAAAGCAATATCTTTTGTGGACACTTC
GAGACACTCTGGACATTATCAATGGTAATGACGAAATAAGAAGGGAAAAG
AGGAATGAGAATAGCTTCCAGGACATGTTTgggaaaaaactttcttttgc
aAGACTGTACAacttttttaaagttcataagcAATATGTTTGGAACAGAG
ATATTCCCGAGTCCTCCTGCCTGTGTGAGGTTTGCGAGAATGCTTGCTTA
CTTGCAAAAGGagtcaataaaagtttgaaattgAAGCTTCCAACAAACCC
TCATGATCTTGTCGAGAAGTACTCCTGTGGTAGAGAATCTAACTGTATGA
ACAACCAATGTAAAAATTGTGATGTCCCCCATTGGGAATGTGATGAATCA
AGTGATATTGGATCAGACAATGACGAATCGGATACCTCGGCTGATAGTTC
CAGCAGCGAAGACGAATCAGACAAAACCATCACTTTTTACCGCTGGGGAA
AGACTGGGCGAACTCAGAAGATTCAAGTCACGATGGACAAAGACGAAGCT
TGGGAAACATGGTGTATGGTCATTAAAGATCTGAAAGGCCACATTTACCG
AAAAAGAAAGCAGgttgAGTTCTACAATGACTTGAAGCAAAATCTGAAAC
CAAATGAAGCCATTATTCAGGTCGATTACAGCGAAGGATACAAGAATAGA
AACCAAGACGAAATACAGTCTGCGTACTTCGGCCACGAGACTTTCAGCAT
TTTCACGGCGTGTGGATACTTCCGTCC Run BLAST on NCBI protein sequence of TCONS_00056106-protein >TCONS_00056106-protein ID=TCONS_00056106-protein|Name=TCONS_00056106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=426bp
MGRTKKSYDNKSYCKRYRQKDPEKYRKDDADRKRYQRYLKKVNNPELYAE
LKKKNRDRMRLSRELKKRAAQEPAPDPEPESAFSSKQSKYRSLKRAEINL
PNSPNKKMEVIGSLAKKYKLRNALSKKKGRKYEDLSEEQVEWLKDFLERS
DMTYINPGKKDHVYIGKIDGVSQYVQKQYLLWTLRDTLDIINGNDEIRRE
KRNENSFQDMFGKKLSFARLYNFFKVHKQYVWNRDIPESSCLCEVCENAC
LLAKGVNKSLKLKLPTNPHDLVEKYSCGRESNCMNNQCKNCDVPHWECDE
SSDIGSDNDESDTSADSSSSEDESDKTITFYRWGKTGRTQKIQVTMDKDE
AWETWCMVIKDLKGHIYRKRKQVEFYNDLKQNLKPNEAIIQVDYSEGYKN
RNQDEIQSAYFGHETFSIFTACGYFR Run BLAST on NCBI transcript from alignment at scaffold_267:590696..592595- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056106 ID=TCONS_00056106|Name=TCONS_00056106|organism=Clytia hemisphaerica|type=transcript|length=1900bp|location=Sequence derived from alignment at scaffold_267:590696..592595- (Clytia hemisphaerica)
CCAATTTTGAATCTGAGTTGTTGGTTGCAGTTGGATTCAGGTAAGATTAT
ATTTTAATCTCAAATTCTTGTGTAAATTTACATATTTTTTTATAAGAATT
GTCTATGCTTAGGTCTGGAAGACATCCATATACTCGAAATATGCTTAAAT
TAGTGTATGCTTATTTCCTTCAATATGCTTGGTTGTGCTTAAAAAATTTG
CAAACTGAGGCTTTATAATGGGTAGATTTAAAAAAAAGCATTGTTACTCA
ACACAACAGGTAAAACATTTTAACTGAAATGAACATCCTGCTTTTTTGGT
TGAATTTTAGGTAAAGAATGGGTCGAACAAAGAAATCGTACGATAACAAA
AGCTACTGCAAACGGTACCGCCAAAAGGATCCAGAAAAATACCGTAAAGA
TGATGCAGATCGTAAACGTTACCAACGGTATTTAAAGAAAGTGAATAACC
CCGAGCTGTATGCTGAGCTTAAGAAAAAGAACCGAGACAGGATGCGGTTA
TCCCGGGAATTAAAGAAGCGTGCTGCTCAAGAACCTGCGCCCGACCCTGA
ACCTGAGAGCGCTTTTTCATCAAAACAATCAAAGTATCGCAGTCTGAAGC
GTGCAGAAATAAACTTGCCAAATTCACCAAACAAAAAAATGGAGGTCATC
GGGTCACTTGCTAAGAAGTACAAGCTGCGCAATGCTTTATCGAAAAAGAA
AGGGAGAAAGTACGAGGATCTAAGTGAAGAACAGGTCGAATGGTTGAAGG
ACTTCCTGGAACGTTCAGACATGACCTATATCAATCCAGGGAAAAAAGAC
CATGTTTACATTGGTAAGATCGATGGTGTGTCCCAATATGTGCAAAAGCA
ATATCTTTTGTGGACACTTCGAGACACTCTGGACATTATCAATGGTAATG
ACGAAATAAGAAGGGAAAAGAGGAATGAGAATAGCTTCCAGGACATGTTT
GGGAAAAAACTTTCTTTTGCAAGACTGTACAACTTTTTTAAAGTTCATAA
GCAATATGTTTGGAACAGAGATATTCCCGAGTCCTCCTGCCTGTGTGAGG
TTTGCGAGAATGCTTGCTTACTTGCAAAAGGAGTCAATAAAAGTTTGAAA
TTGAAGCTTCCAACAAACCCTCATGATCTTGTCGAGAAGTACTCCTGTGG
TAGAGAATCTAACTGTATGAACAACCAATGTAAAAATTGTGATGTCCCCC
ATTGGGAATGTGATGAATCAAGTGATATTGGATCAGACAATGACGAATCG
GATACCTCGGCTGATAGTTCCAGCAGCGAAGACGAATCAGACAAAACCAT
CACTTTTTACCGCTGGGGAAAGACTGGGCGAACTCAGAAGATTCAAGTCA
CGATGGACAAAGACGAAGCTTGGGAAACATGGTGTATGGTCATTAAAGAT
CTGAAAGGCCACATTTACCGAAAAAGAAAGCAGGTACCTAAGCTAATTTT
ATTTTCAAATCAAAACTAAAGACATAATTGTAAAGGCTTTCATTCTGTAA
CACACTAAGTTTTTGTGTGTTACAGAAGGACAAAAAAAAAAGTATCCATT
CATTCCAAGTCATCGTTTGCTCTCAGAAGAAATTATTTCATGTCGTTTCT
GTCTGTATAAATTTAAGAGAATTGATATTTGAGTGCTGACCCAGATATCC
CTGGAGCGGATTATTCAGATTGGTGAAGTGCCGAGACTGTGGACTGGTTG
ATTAATGACGATTATTGTCATATTTGATTTTTTTAGGTTGAGTTCTACAA
TGACTTGAAGCAAAATCTGAAACCAAATGAAGCCATTATTCAGGTCGATT
ACAGCGAAGGATACAAGAATAGAAACCAAGACGAAATACAGTCTGCGTAC
TTCGGCCACGAGACTTTCAGCATTTTCACGGCGTGTGGATACTTCCGTCC
Coding sequence (CDS) from alignment at scaffold_267:590696..592595- >TCONS_00056106 ID=TCONS_00056106|Name=TCONS_00056106|organism=Clytia hemisphaerica|type=CDS|length=2556bp|location=Sequence derived from alignment at scaffold_267:590696..592595- (Clytia hemisphaerica)
GTTGAGTTCTACAATGACTTGAAGCAAAATCTGAAACCAAATGAAGCCAT
TATTCAGGTCGATTACAGCGAAGGATACAAGAATAGAAACCAAGACGAAA
TACAGTCTGCGTACTTCGGCCACGAGACTTTCAGCATTTTCACGGCGTGT
GGATACTTCCGTATGGGTCGAACAAAGAAATCGTACGATAACAAAAGCTA
CTGCAAACGGTACCGCCAAAAGGATCCAGAAAAATACCGTAAAGATGATG
CAGATCGTAAACGTTACCAACGGTATTTAAAGAAAGTGAATAACCCCGAG
CTGTATGCTGAGCTTAAGAAAAAGAACCGAGACAGGATGCGGTTATCCCG
GGAATTAAAGAAGCGTGCTGCTCAAGAACCTGCGCCCGACCCTGAACCTG
AGAGCGCTTTTTCATCAAAACAATCAAAGTATCGCAGTCTGAAGCGTGCA
GAAATAAACTTGCCAAATTCACCAAACAAAAAAATGGAGGTCATCGGGTC
ACTTGCTAAGAAGTACAAGCTGCGCAATGCTTTATCGAAAAAGAAAGGGA
GAAAGTACGAGGATCTAAGTGAAGAACAGGTCGAATGGTTGAAGGACTTC
CTGGAACGTTCAGACATGACCTATATCAATCCAGGGAAAAAAGACCATGT
TTACATTGGTAAGATCGATGGTGTGTCCCAATATGTGCAAAAGCAATATC
TTTTGTGGACACTTCGAGACACTCTGGACATTATCAATGGTAATGACGAA
ATAAGAAGGGAAAAGAGGAATGAGAATAGCTTCCAGGACATGTTTGGGAA
AAAACTTTCTTTTGCAAGACTGTACAACTTTTTTAAAGTTCATAAGCAAT
ATGTTTGGAACAGAGATATTCCCGAGTCCTCCTGCCTGTGTGAGGTTTGC
GAGAATGCTTGCTTACTTGCAAAAGGAGTCAATAAAAGTTTGAAATTGAA
GCTTCCAACAAACCCTCATGATCTTGTCGAGAAGTACTCCTGTGGTAGAG
AATCTAACTGTATGAACAACCAATGTAAAAATTGTGATGTCCCCCATTGG
GAATGTGATGAATCAAGTGATATTGGATCAGACAATGACGAATCGGATAC
CTCGGCTGATAGTTCCAGCAGCGAAGACGAATCAGACAAAACCATCACTT
TTTACCGCTGGGGAAAGACTGGGCGAACTCAGAAGATTCAAGTCACGATG
GACAAAGACGAAGCTTGGGAAACATGGTGTATGGTCATTAAAGATCTGAA
AGGCCACATTTACCGAAAAAGAAAGCAGGTTGAGTTCTACAATGACTTGA
AGCAAAATCTGAAACCAAATGAAGCCATTATTCAGGTCGATTACAGCGAA
GGATACAAGAATAGAAACCAAGACGAAATACAGTCTGCGTACTTCGGCCA
CGAGACTTTCAGCATTTTCACGGCGTGTGGATACTTCCGTATGGGTCGAA
CAAAGAAATCGTACGATAACAAAAGCTACTGCAAACGGTACCGCCAAAAG
GATCCAGAAAAATACCGTAAAGATGATGCAGATCGTAAACGTTACCAACG
GTATTTAAAGAAAGTGAATAACCCCGAGCTGTATGCTGAGCTTAAGAAAA
AGAACCGAGACAGGATGCGGTTATCCCGGGAATTAAAGAAGCGTGCTGCT
CAAGAACCTGCGCCCGACCCTGAACCTGAGAGCGCTTTTTCATCAAAACA
ATCAAAGTATCGCAGTCTGAAGCGTGCAGAAATAAACTTGCCAAATTCAC
CAAACAAAAAAATGGAGGTCATCGGGTCACTTGCTAAGAAGTACAAGCTG
CGCAATGCTTTATCGAAAAAGAAAGGGAGAAAGTACGAGGATCTAAGTGA
AGAACAGGTCGAATGGTTGAAGGACTTCCTGGAACGTTCAGACATGACCT
ATATCAATCCAGGGAAAAAAGACCATGTTTACATTGGTAAGATCGATGGT
GTGTCCCAATATGTGCAAAAGCAATATCTTTTGTGGACACTTCGAGACAC
TCTGGACATTATCAATGGTAATGACGAAATAAGAAGGGAAAAGAGGAATG
AGAATAGCTTCCAGGACATGTTTGGGAAAAAACTTTCTTTTGCAAGACTG
TACAACTTTTTTAAAGTTCATAAGCAATATGTTTGGAACAGAGATATTCC
CGAGTCCTCCTGCCTGTGTGAGGTTTGCGAGAATGCTTGCTTACTTGCAA
AAGGAGTCAATAAAAGTTTGAAATTGAAGCTTCCAACAAACCCTCATGAT
CTTGTCGAGAAGTACTCCTGTGGTAGAGAATCTAACTGTATGAACAACCA
ATGTAAAAATTGTGATGTCCCCCATTGGGAATGTGATGAATCAAGTGATA
TTGGATCAGACAATGACGAATCGGATACCTCGGCTGATAGTTCCAGCAGC
GAAGACGAATCAGACAAAACCATCACTTTTTACCGCTGGGGAAAGACTGG
GCGAACTCAGAAGATTCAAGTCACGATGGACAAAGACGAAGCTTGGGAAA
CATGGTGTATGGTCATTAAAGATCTGAAAGGCCACATTTACCGAAAAAGA
AAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056106-exon-scaffold_267-1575043694:592556..592595 | TCONS_00056106-exon-scaffold_267-1575043694:592556..592595 | Clytia hemisphaerica | exon |
| TCONS_00056106-exon-scaffold_267-1575043694:591163..592285 | TCONS_00056106-exon-scaffold_267-1575043694:591163..592285 | Clytia hemisphaerica | exon |
| TCONS_00056106-exon-scaffold_267-1575043694:590696..590859 | TCONS_00056106-exon-scaffold_267-1575043694:590696..590859 | Clytia hemisphaerica | exon |
| TCONS_00056106-exon-scaffold_267-1510915933:592556..592595 | TCONS_00056106-exon-scaffold_267-1510915933:592556..592595 | Clytia hemisphaerica | exon |
| TCONS_00056106-exon-scaffold_267-1510915933:591163..592285 | TCONS_00056106-exon-scaffold_267-1510915933:591163..592285 | Clytia hemisphaerica | exon |
| TCONS_00056106-exon-scaffold_267-1510915933:590696..590859 | TCONS_00056106-exon-scaffold_267-1510915933:590696..590859 | Clytia hemisphaerica | exon |
| TCONS_00056106-exon-scaffold_267-1491911889:592556..592595 | TCONS_00056106-exon-scaffold_267-1491911889:592556..592595 | Clytia hemisphaerica | exon |
| TCONS_00056106-exon-scaffold_267-1491911889:591163..592285 | TCONS_00056106-exon-scaffold_267-1491911889:591163..592285 | Clytia hemisphaerica | exon |
| TCONS_00056106-exon-scaffold_267-1491911889:590696..590859 | TCONS_00056106-exon-scaffold_267-1491911889:590696..590859 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_267 | supercontig | scaffold_267:590696..592595 - |
Blast
The following BLAST results are available for this feature:
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