|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056199 ID=TCONS_00056199|Name=TCONS_00056199|organism=Clytia hemisphaerica|type=transcript|length=3028bp
CTTGGCTTCAGAATCAACATTTATATGCAATGTTTTGAAAAACCGTACAC
GTATGTGCAAAGAAATTTATCTtagttgattattttttgactttcctGTT
TATTAGAGGTTAAATTTGCTGTTTGGAATAGTTTATCGCAATTTAGCAAA
CTTACAACATTGGACACCCACCATAAAAGATGTCTACTGAAGACTTTATT
GGCAGCTTCATCAAGATACCGTCATCGATGATCGAAGATGAAGACTCGCT
TCTCATCGACACTGGAAAAGATGATCACGTTGAATTTCTTACGCTATACA
AAGAATCACGTGACAACCTTATCTCGAAACGATTTGTGAAAGCAACGgtc
aaaattgaagaaaattatAAAGATGTTCGAAACATCGTCAATTTGATGAA
CGATTTGAACataacaaatatttttgaacttaAGATATCATCATACGAGT
ATTCATCGTATGATGAGGATGAGAAGTATCTCATTTCTTTGTCATCAGGT
GAGAAATGCGAGACAGAGATCAGGATCAATGATGGTACACCATACTTCAA
ATGCGAACAAGGAAAAGTTACTTTGGAGCATCCTCCTTCTTTATTGAAGG
AAATACCAGAAGATTTGTTACAAAAGTCAACTTCGTTTAATGTTACAATT
TGGTTGATAGCCAATGACGTAAATATTGATGGAATGAGATTATTCATTCA
ACGCTTGCTATCGTACAACACACCAATCACATTGTCAAATATTGCGATAA
AAAGTCCGTATGTCAAAACTATCAACGATATGATAAAGGAGTTGAACATA
AAAAACATTGGTTCTCTTACAGTATGGATTCCATCATATAATGACGATGA
GAAGCATCTCATTTCTTTGGTATCAGGTGAGGAATACAAGACAGAGATCA
TGATCGATGATAAAGATGATTTTTGTCAACCACACTTCAAATGCAAACAA
GGACAACTTACTTTGGAGTGCCCTCGTTCTTTATTGAAGGAAATACCAGA
AGATTTGTTACAAAAGTAAACTTCGTTTTATGTTAAAATTAAGCCCGATG
TTGAAAACACAAACGTAATAAACTTTTTACGCCATTTGACGTCATTCAAC
AAACCATTCACTATACGGGTGAACAAGTGGATATCATTTGGTACATTTTC
TTATGTTGCGGAAGGTGAAATTCGACCATTGTTGGAGAAACACAACATTG
ATACAAGTAGTATTGAAATAAAAGATTGATTTAACATTGTTGAGAAATAA
GATTTTccctgcacgttttattttataagaacacctaatatttttgaagc
ctttggatattcttaactttttgagttttaagccaacatgttcttaattt
ccctattttgtgagtattttggtccattttcctaagaaattgggtgtttt
agagtccgcaaagcatttaaatgctcttaacttgttcttaagattttggc
aatcgaagccttatatgttcttatatagcttgttcttacaaaaaacgtCT
ATCGAATATCTTCATACCTGTTCTAAGCTCAATTAGATAAAGATTTTTGA
GGATATTTTCTTTCTATAAAAATTTGTCTGTTTTTTTTAGGCCGCACTGT
ATGTAGAACCTCCAATTAACAGACACTCTCAAATGCTGACACTTCTAATG
GGGATATTAATCCATTTCCCCaaatggtgtccgctaattagaggtgctaa
ttagaggttccaatTATACATACACTAGCCTAGCTAAAATTTATGcagaa
atatcttttttttttgtttaattttttactGATTAAAATAGAGAAACAAT
TCATCACGGAACGCACCATAGCACCACGacattctttgaattttttgaga
ttttagatGTGAAGCACTTCTCAAAGTTCGAAAAATCTATTTCCAAAATC
ATCTTGGTTTAAGAAAAGGAAACAATACTACTATTTGGGTATCTTAGCAT
TGAAGATTGGCATCATCTCAATAATAACTTTTAACTTCCTTACACGTTTT
AAAGTCCacatagtcttaaaatgttcttaacttgttcttaatattttggt
aatCGAAGCTAATTTTATGtacttatatagtttgttcataTATATAAAAA
GTGTATTGTGAATTTTAAAGGATAAAACATCTATTGTAATATTTAGGTAT
TTTTGTCTAAGGTCAAATAAAATGGCCAGTAGCAGTAGTCAAATGATTTG
TAATTAACAACACTCTTCAGGGTGTGGGCGCTCTCCTTTTAGATTTGAAA
TCTTAGGTAAGAGGGCGGCGCAACATAGACGATAATGACtatgttcattt
tttttcagtttctctgttacacgttttttttataagaataacttctataa
gaatatcagggtgagattatTATTGcatattgtttagaacaatagaaaaa
taagaataatgctcaccctcagtcAAAAtacattattcttataaaaaaac
gtgtatttcacgATTTGTAAATACATGCATGTCaccaattattttttttt
tttactttaacaaaacattcttaggttcagttgccaaattttatgatggc
aatattcttagtatattcttaatttttttgcccAGTTTCATCATATATAT
TCTTATAagatatattcttataaaaaaacgtgtattcacgATTTGTAAAT
ACATGCATGTCaccaattattattttttttactttaacaaaacattctta
ggttcagttgccaaattttatgatggcaatattcttagtatattcttaat
ttttttgcccAGTTTCATCATATATATTCTTATAagatatattcttataa
aaaaacgtgtattcacgATTTGTAAATACATGCATGTCaccaattattat
tttttttactttaacaaaacattcttaggttcagttgccaaattttatga
tggcaatattcttagtatattcttaatttttttgcccAGTTTCATCatat
atattcttataaaatatattcttatataaaaatgtgTACCCAGTGTGCAT
AGCcctacttcgtcacatatcaCTAATT Run BLAST on NCBI protein sequence of TCONS_00056199-protein >TCONS_00056199-protein ID=TCONS_00056199-protein|Name=TCONS_00056199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MSTEDFIGSFIKIPSSMIEDEDSLLIDTGKDDHVEFLTLYKESRDNLISK
RFVKATVKIEENYKDVRNIVNLMNDLNITNIFELKISSYEYSSYDEDEKY
LISLSSGEKCETEIRINDGTPYFKCEQGKVTLEHPPSLLKEIPEDLLQKS
TSFNVTIWLIANDVNIDGMRLFIQRLLSYNTPITLSNIAIKSPYVKTIND
MIKELNIKNIGSLTVWIPSYNDDEKHLISLVSGEEYKTEIMIDDKDDFCQ
PHFKCKQGQLTLECPRSLLKEIPEDLLQK Run BLAST on NCBI transcript from alignment at scaffold_269:173751..178580+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056199 ID=TCONS_00056199|Name=TCONS_00056199|organism=Clytia hemisphaerica|type=transcript|length=4830bp|location=Sequence derived from alignment at scaffold_269:173751..178580+ (Clytia hemisphaerica)
CTTGGCTTCAGAATCAACATTTATATGCAATGTTTTGAAAAACCGTACAC
GTATGTGCAAAGAAATTTATCTtagttgattattttttgactttcctGTT
TATTAGAGGTTAAATTTGCTGTTTGGAATAGTTTATCGCAATTTAGCAAA
CTTACAACATTGGACACCCACCATAAAAGGTAATTAGAGCTAACTTTTAT
TATTCTGAGATGAAATAATCGTACTAAACGACCTTAGGGCCAGCCCATAC
CTGACATCTATTTATGCTTAGGTTTCCACCCCCCCTCACCATTATAGTGA
GAGCCACTATGTTCTGAAAGCAttcttcgtgtgcacagagttgttaaaag
caaactaacttttttaaatgatcaattaggtccataagatcacaaaaacg
agtggtgagaaaaattttgaccNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNagtggtgagaaaaattttgaccattttgctggtccccatgtgacgtca
tcacttttgctggggcttgaaaatgaaagtgaaaattagaagcttatata
tggctcaaatgaaTGATATTTGtccaaggattccaaaaaatatcataaca
tatacctgaaaatcaatatttgagaagctataaataaaaaaaattaaaaa
aatgacgtcatcgatgacgtcatcgacagtaaaaaaatcgtcaaaatcga
aaaatttttgttccgtttgaaagaagaccatctagtgaacaaaaaatatt
actacaaaAAAGTCTGAATTTCTCCTTATAAGCCCCTGTCAGCAAAtttg
taattcattaaatttgccTGCGAAAGGTTAGCTTCGGGCACGCCCAGAAT
CTTTAAAAAGTCAAGTCAAACGCATTTCACAGAATAATTTCCTATCAAGT
GAAATTCAAGGTTTtttgtagtaatattttttgttcccaTACAAGTcctc
tttcaaatgaaaaattgtcgatttcgacaattttttaattgccgatgacg
tcatcgatgacgtcatttttgagctattttcctttatagcttctcaaata
ttgattttcaggtatatgttgtgatactttttggaatgcctggataaata
tctttcatttgagtcatatatgagcttctaattttcaatttcaagcccca
gcaaaagtgatgacgtcacatggggaccagcaaaatggtcaaaatttttc
tcaccactcgtttttgtgatcttaaaaaagatagtttgcttttaaaaagt
ctgtgcacacgaagaacATTGTAGCTCTCACTATTAATAGAATGCAATAA
AAAAACGGGGCTTGTTATTTGTGGTTGTAAAGCTgttgcttataataaaa
ataaatatttccattATAGGCGCTATttcatgtttgctttgaaagaacca
atcactgAACGCTAAAatttagtggttgaaaagttacagaagttatagat
cattttcttataaagctgattcttataagaaaaataaatatttcaattat
aGGCGTCATTTTATGTTTGCTTTCAAAGAACTGATCACTGAAAGCTAATT
CTTGCTTgttaaaaattatcaattttctgataaagtttgtgcttataaaa
aaaaattatttccataTTAGGCGCTATTTTGTGTTTGCTTGGAAAGAACT
AATCACCGAATGCTaataattgatttttcaaaagttatgtatttttttct
tataaagttgatgcttataaggaaaataaatatttctattttaggCGCCA
TTCCATTTTGCCTTGAAAAAACTAGCCAATGCAATCCACACTGAGCAATT
TTTTTCAGGCGCTTGCAACGCAATCTATAGATAATTTTCATAAATATTGG
AATTGTGTTTAAAATgacaatatttatttttcttataagcatcagcttta
tttttcttataagcttcAATTTTCGGTTTAGATGTCTACTGAAGACTTTA
TTGGCAGCTTCATCAAGATACCGTCATCGATGATCGAAGATGAAGACTCG
CTTCTCATCGACACTGGAAAAGATGATCACGTTGAATTTCTTACGCTATA
CAAAGAATCACGTGACAACCTTATCTCGAAACGATTTGTGAAAGCAACGg
tcaaaattgaagaaaattatAAAGATGTTCGAAACATCGTCAATTTGATG
AACGATTTGAACataacaaatatttttgaacttaAGATATCATCATACGA
GTATTCATCGTATGATGAGGATGAGAAGTATCTCATTTCTTTGTCATCAG
GTGAGAAATGCGAGACAGAGATCAGGATCAATGATGGTACACCATACTTC
AAATGCGAACAAGGAAAAGTTACTTTGGAGCATCCTCCTTCTTTATTGAA
GGAAATACCAGAAGATTTGTTACAAAAGTCAACTTCGTTTAATGTTACAA
TTTGGTTGATAGCCAATGACGTAAATATTGATGGAATGAGATTATTCATT
CAACGCTTGCTATCGTACAACACACCAATCACATTGTCAAATATTGCGAT
AAAAAGTCCGTATGTCAAAACTATCAACGATATGATAAAGGAGTTGAACA
TAAAAAACATTGGTTCTCTTACAGTATGGATTCCATCATATAATGACGAT
GAGAAGCATCTCATTTCTTTGGTATCAGGTGAGGAATACAAGACAGAGAT
CATGATCGATGATAAAGATGATTTTTGTCAACCACACTTCAAATGCAAAC
AAGGACAACTTACTTTGGAGTGCCCTCGTTCTTTATTGAAGGAAATACCA
GAAGATTTGTTACAAAAGTAAACTTCGTTTTATGTTAAAATTAAGCCCGA
TGTTGAAAACACAAACGTAATAAACTTTTTACGCCATTTGACGTCATTCA
ACAAACCATTCACTATACGGGTGAACAAGTGGATATCATTTGGTACATTT
TCTTATGTTGCGGAAGGTGAAATTCGACCATTGTTGGAGAAACACAACAT
TGATACAAGTAGTATTGAAATAAAAGATTGATTTAACATTGTTGAGAAAT
AAGATTTTccctgcacgttttattttataagaacacctaatatttttgaa
gcctttggatattcttaactttttgagttttaagccaacatgttcttaat
ttccctattttgtgagtattttggtccattttcctaagaaattgggtgtt
ttagagtccgcaaagcatttaaatgctcttaacttgttcttaagattttg
gcaatcgaagccttatatgttcttatatagcttgttcttacaaaaaacgt
CTATCGAATATCTTCATACCTGTTCTAAGCTCAATTAGATAAAGATTTTT
GAGGATATTTTCTTTCTATAAAAATTTGTCTGTTTTTTTTAGGCCGCACT
GTATGTAGAACCTCCAATTAACAGACACTCTCAAATGCTGACACTTCTAA
TGGGGATATTAATCCATTTCCCCaaatggtgtccgctaattagaggtgct
aattagaggttccaatTATACATACACTAGCCTAGCTAAAATTTATGcag
aaatatcttttttttttgtttaattttttactGATTAAAATAGAGAAACA
ATTCATCACGGAACGCACCATAGCACCACGacattctttgaattttttga
gattttagatGTGAAGCACTTCTCAAAGTTCGAAAAATCTATTTCCAAAA
TCATCTTGGTTTAAGAAAAGGAAACAATACTACTATTTGGGTATCTTAGC
ATTGAAGATTGGCATCATCTCAATAATAACTTTTAACTTCCTTACACGTT
TTAAAGTCCacatagtcttaaaatgttcttaacttgttcttaatattttg
gtaatCGAAGCTAATTTTATGtacttatatagtttgttcataTATATAAA
AAGTGTATTGTGAATTTTAAAGGATAAAACATCTATTGTAATATTTAGGT
ATTTTTGTCTAAGGTCAAATAAAATGGCCAGTAGCAGTAGTCAAATGATT
TGTAATTAACAACACTCTTCAGGGTGTGGGCGCTCTCCTTTTAGATTTGA
AATCTTAGGTAAGAGGGCGGCGCAACATAGACGATAATGACtatgttcat
tttttttcagtttctctgttacacgttttttttataagaataacttctat
aagaatatcagggtgagattatTATTGcatattgtttagaacaatagaaa
aataagaataatgctcaccctcagtcAAAAtacattattcttataaaaaa
acgtgtatttcacgATTTGTAAATACATGCATGTCaccaattattttttt
tttttactttaacaaaacattcttaggttcagttgccaaattttatgatg
gcaatattcttagtatattcttaatttttttgcccAGTTTCATCATATAT
ATTCTTATAagatatattcttataaaaaaacgtgtattcacgATTTGTAA
ATACATGCATGTCaccaattattattttttttactttaacaaaacattct
taggttcagttgccaaattttatgatggcaatattcttagtatattctta
atttttttgcccAGTTTCATCATATATATTCTTATAagatatattcttat
aaaaaaacgtgtattcacgATTTGTAAATACATGCATGTCaccaattatt
attttttttactttaacaaaacattcttaggttcagttgccaaattttat
gatggcaatattcttagtatattcttaatttttttgcccAGTTTCATCat
atatattcttataaaatatattcttatataaaaatgtgTACCCAGTGTGC
ATAGCcctacttcgtcacatatcaCTAATT Coding sequence (CDS) from alignment at scaffold_269:173751..178580+ >TCONS_00056199 ID=TCONS_00056199|Name=TCONS_00056199|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_269:173751..178580+ (Clytia hemisphaerica)
ATGTCTACTGAAGACTTTATTGGCAGCTTCATCAAGATACCGTCATCGAT
GATCGAAGATGAAGACTCGCTTCTCATCGACACTGGAAAAGATGATCACG
TTGAATTTCTTACGCTATACAAAGAATCACGTGACAACCTTATCTCGAAA
CGATTTGTGAAAGCAACGgtcaaaattgaagaaaattatAAAGATGTTCG
AAACATCGTCAATTTGATGAACGATTTGAACataacaaatatttttgaac
ttaAGATATCATCATACGAGTATTCATCGTATGATGAGGATGAGAAGTAT
CTCATTTCTTTGTCATCAGGTGAGAAATGCGAGACAGAGATCAGGATCAA
TGATGGTACACCATACTTCAAATGCGAACAAGGAAAAGTTACTTTGGAGC
ATCCTCCTTCTTTATTGAAGGAAATACCAGAAGATTTGTTACAAAAGTCA
ACTTCGTTTAATGTTACAATTTGGTTGATAGCCAATGACGTAAATATTGA
TGGAATGAGATTATTCATTCAACGCTTGCTATCGTACAACACACCAATCA
CATTGTCAAATATTGCGATAAAAAGTCCGTATGTCAAAACTATCAACGAT
ATGATAAAGGAGTTGAACATAAAAAACATTGGTTCTCTTACAGTATGGAT
TCCATCATATAATGACGATGAGAAGCATCTCATTTCTTTGGTATCAGGTG
AGGAATACAAGACAGAGATCATGATCGATGATAAAGATGATTTTTGTCAA
CCACACTTCAAATGCAAACAAGGACAACTTACTTTGGAGTGCCCTCGTTC
TTTATTGAAGGAAATACCAGAAGATTTGTTACAAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056199-exon-scaffold_269-1491911889:173751..173929 | TCONS_00056199-exon-scaffold_269-1491911889:173751..173929 | Clytia hemisphaerica | exon |
| TCONS_00056199-exon-scaffold_269-1510915933:173751..173929 | TCONS_00056199-exon-scaffold_269-1510915933:173751..173929 | Clytia hemisphaerica | exon |
| TCONS_00056199-exon-scaffold_269-1575043694:173751..173929 | TCONS_00056199-exon-scaffold_269-1575043694:173751..173929 | Clytia hemisphaerica | exon |
| TCONS_00056199-exon-scaffold_269-1491911889:175732..178580 | TCONS_00056199-exon-scaffold_269-1491911889:175732..178580 | Clytia hemisphaerica | exon |
| TCONS_00056199-exon-scaffold_269-1510915933:175732..178580 | TCONS_00056199-exon-scaffold_269-1510915933:175732..178580 | Clytia hemisphaerica | exon |
| TCONS_00056199-exon-scaffold_269-1575043694:175732..178580 | TCONS_00056199-exon-scaffold_269-1575043694:175732..178580 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_269 | supercontig | scaffold_269:173751..178580 + |
Blast
The following BLAST results are available for this feature:
|
