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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056245 ID=TCONS_00056245|Name=TCONS_00056245|organism=Clytia hemisphaerica|type=transcript|length=2060bp
TATGTAAAATGTCCCAATAAAGAGGTatcaaatacacctttcccgttaTT
CAGATTTCGCCCGGAAAAACTTGTTCTCCATCgttgtgttaaaaattcaa
ggGATAAACTCGACTTTGCATGCGTTTGCTTAGGGGAAAGTAATTTTTGT
CTTCTATATTTTGACGAccaaatttgtttgaaaaaaaatttggaggGTGA
TATTGTATCATGGATAGTAGAAGCATACTAAAGTTTGAAGAAATTCTGTA
CGATAGAAGTTGagaaaagtccaaaaaaccacCTTTTCCTAAGCAATCAC
AAACAAaatgggtttgtttacctcctgTCCAAAAAACGATGGAGAaatac
gggaaaggtgtattccaAAATGCAGTCCAAAAGTCTAAACTATCACGGAG
ATACTGAGGCTACTGACAGAGgcagtgactaaggaggcgcaaccatggtt
tgcgccgacagaagaaattttgattttcgactttcTCATTTGGCTAAAAT
CACTCCCTTTTCTCCTCAAATTTTGtaactttgaaaaatttaaatgaaaa
taaaaccaatttcaaagtttttatgcTTCGTTTTTATATTACAGATACAG
CCATTCATATTAATCAATTTTATCATCAATTTTTCCCGATTACGAATCAT
TTTCGCAATTGCCTTATTCAAAAAGAGGGACTTTCATACACattgaatat
attttacacCATATGTTTAGATTATGACTTCGACAATTTCAGCATGCTCA
GCTATACAGTTTTGATActttagaattaaaattttgagctttttttgTGT
ATTTCACTTTCAAAGTATGGTTTTAATAAGAGAAGGGAAGTTTCGAGTGG
GATGACCCTTTTCATGTGAAATTTCTACTGGGGTACATCGAAATCAGAAC
ATTTTGAGTGGGGTATGTTTGGATTCTTCGCTATTTTCAGTGGGGTCATT
TTCAGCTACAAGATTCCAGTGGGGTgaaaaaatgggcaatttttggaaaa
attttccactGGGTCACAGGCACAGGGGTGTACAAAGAGAAGTATTTGAC
ATTGTTCACAAATGGGGAAGAGATTTTGTAAAGAACCTTTCTTCGAAAGT
ACCAGGTAATATTGAGCCATTTCGTATTTTCTTAACCGGCGATGGAGTTG
TAGGAAAAGCCATTTGCTCACAACCATTCATCATTCTTTGTCTAAACTTC
TGATGTACAGAGAAGGGGAACCAACtaaagaaagaattctagtgcTTGCT
CCAACTGGTGTAGCAGCAATTAATGTGAATGGAACTACTATTCATACAGG
ATTGATCATTTCTTTTCATTGAGTGGTTCATCTCAagcaaatttgcaaaa
aaagctTGCATGTGTTGAAGTAATTATGATTGATGAAATTTCTATGATGC
CTAATCGTTTGTTCAGAAAAATTGATCAAAGGTTGCAGGATATATTTAAT
GTGAAAAAGCCATTTGCTGGAAAGTCAGTTTTATTATGTGGTGATTTATA
TCAACTTCCACCTAGTTTTAAGGATCCCATTTACAAAGTTCCTATTCTCA
AAAAAGATCCCAATAATGgcaatgaaaataagaaacgtGAACCCATGATA
GACCTTCCTTTATGGATGAATTATACGGGTTTGAACTGTGGAGAAGTTTC
CAAATGGCTGAATTAACTGAAGTTATGAGGCAAAGAGATGATATACATTT
TGTTGACCTTTTGAATCGAATTCGTGTAGGTGAGCTAGATGATGAAAAAG
AAGAGCTTTTGAAATCAAGATTCATTTCTAAGGACAGCCCAAATTACCCG
GCAGACGCGACTCATATTTTTGCAGAAAACAAACCGGTTGATGCTTACAA
TTTGAAGAAACTTTATGAACTATCAACTGAAATGTATTTGATTACCGCAC
AAGATGAGGTACCAAAACGTTTGACAAGTTCAGAAATGAAGTTTATTTGC
CCAGTTCATTTGATAGATATTATAAATATACTTTTATAGAGCTCTACTGT
ATACTGTGAACtttcatttgttttaaaatcGATCTGCATTGCCATTTGAA
ATCATTGCCT Run BLAST on NCBI protein sequence of TCONS_00056245-protein >TCONS_00056245-protein ID=TCONS_00056245-protein|Name=TCONS_00056245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MDELYGFELWRSFQMAELTEVMRQRDDIHFVDLLNRIRVGELDDEKEELL
KSRFISKDSPNYPADATHIFAENKPVDAYNLKKLYELSTEMYLITAQDEV
PKRLTSSEMKFICPVHLIDIINILL Run BLAST on NCBI transcript from alignment at scaffold_27:25925..28042+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056245 ID=TCONS_00056245|Name=TCONS_00056245|organism=Clytia hemisphaerica|type=transcript|length=2118bp|location=Sequence derived from alignment at scaffold_27:25925..28042+ (Clytia hemisphaerica)
TATGTAAAATGTCCCAATAAAGAGGTatcaaatacacctttcccgttaTT
CAGATTTCGCCCGGAAAAACTTGTTCTCCATCgttgtgttaaaaattcaa
ggGATAAACTCGACTTTGCATGCGTTTGCTTAGGGGAAAGTAATTTTTGT
CTTCTATATTTTGACGAccaaatttgtttgaaaaaaaatttggaggGTGA
TATTGTATCATGGATAGTAGAAGCATACTAAAGTTTGAAGAAATTCTGTA
CGATAGAAGTTGagaaaagtccaaaaaaccacCTTTTCCTAAGCAATCAC
AAACAAaatgggtttgtttacctcctgTCCAAAAAACGATGGAGAaatac
gggaaaggtgtattccaAAATGCAGTCCAAAAGTCTAAACTATCACGGAG
ATACTGAGGCTACTGACAGAGgcagtgactaaggaggcgcaaccatggtt
tgcgccgacagaagaaattttgattttcgactttcTCATTTGGCTAAAAT
CACTCCCTTTTCTCCTCAAATTTTGtaactttgaaaaatttaaatgaaaa
taaaaccaatttcaaagtttttatgcTTCGTTTTTATATTACAGATACAG
CCATTCATATTAATCAATTTTATCATCAATTTTTCCCGATTACGAATCAT
TTTCGCAATTGCCTTATTCAAAAAGAGGGACTTTCATACACattgaatat
attttacacCATATGTTTAGATTATGACTTCGACAATTTCAGCATGCTCA
GCTATACAGTTTTGATActttagaattaaaattttgagctttttttgTGT
ATTTCACTTTCAAAGTATGGTTTTAATAAGAGAAGGGAAGTTTCGAGTGG
GATGACCCTTTTCATGTGAAATTTCTACTGGGGTACATCGAAATCAGAAC
ATTTTGAGTGGGGTATGTTTGGATTCTTCGCTATTTTCAGTGGGGTCATT
TTCAGCTACAAGATTCCAGTGGGGTgaaaaaatgggcaatttttggaaaa
attttccactGGGTCACAGGCACAGGGGTGTACAAAGAGAAGTATTTGAC
ATTGTTCACAAATGGGGAAGAGATTTTGTAAAGAACCTTTCTTCGAAAGT
ACCAGGTAATATTGAGCCATTTCGTATTTTCTTAACCGGCGATGGAGTTG
TAGGAAAAGCCATTTGCTCACAACCATTCATCATTCTTTGTCTAAACTTC
TGATGTACAGAGAAGGGGAACCAACtaaagaaagaattctagtgcTTGCT
CCAACTGGTGTAGCAGCAATTAATGTGAATGGAACTACTATTCATACAGG
ATTGATCATTTCTTTTCATTGAGTGGTTCATCTCAagcaaatttgcaaaa
aaagctTGCATGTGTTGAAGTAATTATGATTGATGAAATTTCTATGATGC
CTAATCGTTTGTTCAGAAAAATTGATCAAAGGTTGCAGGATATATTTAAT
GTGAAAAAGCCATTTGCTGGAAAGTCAGTTTTATTATGTGGTGATTTATA
TCAACTTCCACCTAGTTTTAAGGATCCCATTTACAAAGTTCCTATTCTCA
AAAAAGATCCCAATAATGgcaatgaaaataagaaacgtGAACCCATGATA
GACCTTCCTTTATGGATGAATTATACGGGTTTGAACTGTGGAGAAGTTTC
CAAATGGCTGAATTAACTGAAGTTATGAGGCAAAGAGATGATATACATTT
TGTTGACCTTTTGAATCAAATTCGTGTNAGTTATGAGGCAAAGAGATGAT
ATACATTTTGTTGACCTTTTGAATCGAATTCGTGTAGGTGAGCTAGATGA
TGAAAAAGAAGAGCTTTTGAAATCAAGATTCATTTCTAAGGACAGCCCAA
ATTACCCGGCAGACGCGACTCATATTTTTGCAGAAAACAAACCGGTTGAT
GCTTACAATTTGAAGAAACTTTATGAACTATCAACTGAAATGTATTTGAT
TACCGCACAAGATGAGGTACCAAAACGTTTGACAAGTTCAGAAATGAAGT
TTATTTGCCCAGTTCATTTGATAGATATTATAAATATACTTTTATAGAGC
TCTACTGTATACTGTGAACtttcatttgttttaaaatcGATCTGCATTGC
CATTTGAAATCATTGCCT Coding sequence (CDS) from alignment at scaffold_27:25925..28042+ >TCONS_00056245 ID=TCONS_00056245|Name=TCONS_00056245|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_27:25925..28042+ (Clytia hemisphaerica)
ATGGATGAATTATACGGGTTTGAACTGTGGAGAAGTTTCCAAATGGCTGA
ATTAACTGAAGTTATGAGGCAAAGAGATGATATACATTTTGTTGACCTTT
TGAATCGAATTCGTGTAGGTGAGCTAGATGATGAAAAAGAAGAGCTTTTG
AAATCAAGATTCATTTCTAAGGACAGCCCAAATTACCCGGCAGACGCGAC
TCATATTTTTGCAGAAAACAAACCGGTTGATGCTTACAATTTGAAGAAAC
TTTATGAACTATCAACTGAAATGTATTTGATTACCGCACAAGATGAGGTA
CCAAAACGTTTGACAAGTTCAGAAATGAAGTTTATTTGCCCAGTTCATTT
GATAGATATTATAAATATACTTTTATAGATGGATGAATTATACGGGTTTG
AACTGTGGAGAAGTTTCCAAATGGCTGAATTAACTGAAGTTATGAGGCAA
AGAGATGATATACATTTTGTTGACCTTTTGAATCGAATTCGTGTAGGTGA
GCTAGATGATGAAAAAGAAGAGCTTTTGAAATCAAGATTCATTTCTAAGG
ACAGCCCAAATTACCCGGCAGACGCGACTCATATTTTTGCAGAAAACAAA
CCGGTTGATGCTTACAATTTGAAGAAACTTTATGAACTATCAACTGAAAT
GTATTTGATTACCGCACAAGATGAGGTACCAAAACGTTTGACAAGTTCAG
AAATGAAGTTTATTTGCCCAGTTCATTTGATAGATATTATAAATATACTT
TTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056245-exon-scaffold_27-1491911889:25925..27603 | TCONS_00056245-exon-scaffold_27-1491911889:25925..27603 | Clytia hemisphaerica | exon |
| TCONS_00056245-exon-scaffold_27-1510915933:25925..27603 | TCONS_00056245-exon-scaffold_27-1510915933:25925..27603 | Clytia hemisphaerica | exon |
| TCONS_00056245-exon-scaffold_27-1575043694:25925..27603 | TCONS_00056245-exon-scaffold_27-1575043694:25925..27603 | Clytia hemisphaerica | exon |
| TCONS_00056245-exon-scaffold_27-1491911889:27662..28042 | TCONS_00056245-exon-scaffold_27-1491911889:27662..28042 | Clytia hemisphaerica | exon |
| TCONS_00056245-exon-scaffold_27-1510915933:27662..28042 | TCONS_00056245-exon-scaffold_27-1510915933:27662..28042 | Clytia hemisphaerica | exon |
| TCONS_00056245-exon-scaffold_27-1575043694:27662..28042 | TCONS_00056245-exon-scaffold_27-1575043694:27662..28042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:25925..28042 + |
Blast
The following BLAST results are available for this feature:
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