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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056248 ID=TCONS_00056248|Name=TCONS_00056248|organism=Clytia hemisphaerica|type=transcript|length=1052bp
tttcatcctcgattttggcactttcataagaatacttgaccctcatccaa
agtacactattctaataaaaaaagcgtgtattctcTTTTATAAAAGATTA
TATAATATAATTAGTGACCATGCGTGTAGATGATAGAATCGTCTAGAATT
GTCTCGATAATTATACGACCAAGATGCCGTGGAAACTGTTGGTGCTGATT
GGTATTTTAAAATTTACTCTCATTCGAATTGGTgctgaaaaatgctttaa
aaagGTGCCACAGAATTACCATGGTGTCTCCCCATTAGTTGTCATTGATA
AAGACGAAGAAGTGAGTGGGAACGTTTTGAGAGGTATCATCCCCGTCTTA
TCACCAGAGAACATCGTCCACATCAAATTTCGTATCAACCAATGGACGAA
TATCGAATGGTGTGCAATACTCCAATTCTTTAAAGGTGACGGAGTTGGGG
TAGTCTATGGTCACAGACTCCCATTGGTCATGTTAAAACAACAACAAGGA
AATCAACATATCGAACTTAGTTCGTCAGTGGATGGCGTCTGGAACCACTG
GTATGGCGTTTATTCGCCAAAGTTGAATTACGATTACGACGTCGAGTTCC
GGCACAGATACAAAGGATCGGGAGTATACGTATTCACGATCGTCGTGAAT
GGAGAAATTGTAATGACCAAAGATAACTACCAAGCCAAGCAATTTTATGA
TGTCAAGATGTACACAGGTATGCCACAAGCAGCCTTTTGTGGTGGAGTCA
CTATCAGCTATCTAGCAGTGaccaattttttgtaaaatgcaaaaaaaatt
tggagcTTAAACAGAATTCGAAACCTTCTTACATTTGACCgacagaaaat
aatttttaatgcCAAACCTTaggtttgatgaaattgatttgtttaataac
aatattttgaaatcttagcttttcatagattttagTGCTTCTCATAGttc
ttgtttttaatattttcaccgTATTTTCCATTGCTTTTGCTTATACTTTT
GGGGCTGGTCTGACCCGAAAGGTTGTGCTATTTCGACAGGATTGCGATTC
AG Run BLAST on NCBI protein sequence of TCONS_00056248-protein >TCONS_00056248-protein ID=TCONS_00056248-protein|Name=TCONS_00056248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MPWKLLVLIGILKFTLIRIGAEKCFKKVPQNYHGVSPLVVIDKDEEVSGN
VLRGIIPVLSPENIVHIKFRINQWTNIEWCAILQFFKGDGVGVVYGHRLP
LVMLKQQQGNQHIELSSSVDGVWNHWYGVYSPKLNYDYDVEFRHRYKGSG
VYVFTIVVNGEIVMTKDNYQAKQFYDVKMYTGMPQAAFCGGVTISYLAVT
NFL Run BLAST on NCBI transcript from alignment at scaffold_27:158299..161311+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056248 ID=TCONS_00056248|Name=TCONS_00056248|organism=Clytia hemisphaerica|type=transcript|length=3013bp|location=Sequence derived from alignment at scaffold_27:158299..161311+ (Clytia hemisphaerica)
tttcatcctcgattttggcactttcataagaatacttgaccctcatccaa
agtacactattctaataaaaaaagcgtgtattctcTTTTATAAAAGATTA
TATAATATAATTAGTGACCATGCGTGTAGATGATAGAATCGTCTAGAATT
GTCTCGATAATTATACGACCAAGATGCCGTGGAAACTGTTGGTGCTGATT
GGTATTTTAAAATTTACTCTCATTCGAATTGGTgctgaaaaatgctttaa
aaaggTAAGCAAAAAAACTTCTCGGGTAGATAGTTATTCTCCGAGTGTGG
TCGAAAATGTACGAGCTTTTTAAGccagaataaataaaaatttgtttgaa
atagATGAAAGGAAAAGATTTCTAccgaaaaaatctttctttggcGTGTT
ATGTTTGATGCAATACACTTTttggaaaagttaaaaaaatttgttcacat
ttctttctttgtccaagattttttttgttGCAATCTTAGGTCAGAAAGCC
CCATTGCGGGGCAATTATACCTTGTTTTTGCAACTGGGAAATCAAAGCCT
AATTCCTTGTATTTTAGGTGCCACAGAATTACCATGGTGTCTCCCCATTA
GTTGTCATTGATAAAGGTATGGGTACAATTCTTTATACAACACATTTATA
GATAcacttttcaaaataatcaaaaaggcgtagtggtatagtggttatca
tcctNTATAGATACACTTTTCAcacaataaattgaagttgagataagaat
tgtttgatacttaaagtttcacgcaacttttcgtcacgatcttcagtcaa
aaattctatacacttttcaaaataattaaataattagatacacttttcaa
aatattcaaaaaggcgtagtggtatacagtagtggttatcatccttgact
cccacatgggaggcccgagttcgatactcaccgtgtctctacgattcact
tggtcAACCCATGCTATGTGAGGGGAATTaggtaccattactctgataca
agagtgtgggtaggttagacagacattgtgacgtgccgtggcactcataa
ggttTGTTCTCGCGTGAGTATCGCTCTCCTAGTGTCGTTCAGACACTAGC
CCAATGCTGTTCAAATCATTACCAAGAGATATACATGACATGACTAACAG
TTTCAGAAATGCctccaaacaaaaatttgaccaacattgggctattccaa
aaaaggTTTGTACCCCATATGTTGAGgagatcttttaaaaaaaaggttaC
CCCCTGgattattttccaatttttcaagaCTGCCTTGGATTTTCAACccg
attttactgaccaggcctggattttatcattcaaaaaaccagaccactct
ggattttttattttccagaccaccctggacgtcacacctcctcaacatag
ggagTACAGACTATTTCTTAAATAGCCCATTTCAAAGATGTTCAAAACAA
ACCACTATTTTCGGCCTACTCAGTAGGactgttttctgatttttcgaaCC
TTCGAAGTCCCTGTTTCCAGGTctaaaaaggcacccttaaggtgCCGCGC
CCTCCACTTGCCTAGGTACCCCCTCCCTCCAGAGTAATGACAGCCGAATT
TATagttcatgatatgcaccattgcaatgtcttctgacattacatcatag
acccaatagctgattggttgtaagtgacgtaaaatcagtcaattcggcac
tttcaaccaatcagctgttgggtccgttgAAGACGTTGCAATGGTTCATA
TCATGAACATGTAATTCAACTTTTTTATATGACAGACGAAGAAGTGAGTG
GGAACGTTTTGAGAGGTATCATCCCCGTCTTATCACCAGAGAACATCGTC
CACATCAAATTTCGTATCAACCAATGGACGAATATCGAATGGTGTGCAAT
ACTCCAATTCTTTAAAGGTTTGAAATTAAAGGTTTAATTTGCCAACCCCC
CCNATTGTGGACTGGGGCTTATAGAGGAACAAAAGttacataatttcgtg
aagtcattgcagtggtgcatatcatgaattacctTATTGTGGACTGGGGC
TTATAGAGgaacaatttccaaccccctggTTGAATAGTAGTAATCTTGCA
CCCCTATGTAGGTTATTATTTTTCGACATGCTAAAGTGATGATAAGGACT
ACCGATTTCGTACCAAAAGGCCGGCATAAAAGAGAATCACATTTCATCGA
GAAAACACAATACATAAGAACAGATAAGAAAAGTTCTTTCAGGTTTTTAT
TGTCACCAAATAGGGTGCAGTACGCAGTGCTGATTAGCCCCAataaggac
aaaaggtataaaCCTGCTCTGTCACCCAATCTtttgaaagaagatagttg
gacgaAAATTAATTTGACTTTTACCAAATATATATTATTCTTTTAGGTGA
CGGAGTTGGGGTAGTCTATGGTCACAGACTCCCATTGGTCATGTTAAAAC
AACAACAAGGAAATCAACATATCGAACTTAGTTCGTCAGTGGATGGCGTC
TGGAACCACTGGTATGGCGTTTATTCGCCAAAGTTGAATTACGATTACGA
CGTCGAGTTCCGGCACAGATACAAAGGATCGGGAGTATACGTATTCACGA
TCGTCGTGAATGGAGAAATTGTAATGACCAAAGATAACTACCAAGCCAAG
CAATTTTATGATGTCAAGATGTACACAGGTATGCCACAAGCAGCCTTTTG
TGGTGGAGTCACTATCAGCTATCTAGCAGTGaccaattttttgtaaaatg
caaaaaaaatttggagcTTAAACAGAATTCGAAACCTTCTTACATTTGAC
CgacagaaaataatttttaatgcCAAACCTTaggtttgatgaaattgatt
tgtttaataacaatattttgaaatcttagcttttcatagattttagTGCT
TCTCATAGttcttgtttttaatattttcaccgTATTTTCCATTGCTTTTG
CTTATACTTTTGGGGCTGGTCTGACCCGAAAGGTTGTGCTATTTCGACAG
GATTGCGATTCAG Coding sequence (CDS) from alignment at scaffold_27:158299..161311+ >TCONS_00056248 ID=TCONS_00056248|Name=TCONS_00056248|organism=Clytia hemisphaerica|type=CDS|length=2448bp|location=Sequence derived from alignment at scaffold_27:158299..161311+ (Clytia hemisphaerica)
ATGCCGTGGAAACTGTTGGTGCTGATTGGTATTTTAAAATTTACTCTCAT
TCGAATTGGTgctgaaaaatgctttaaaaagGTGCCACAGAATTACCATG
GTGTCTCCCCATTAGTTGTCATTGATAAAGACGAAGAAGTGAGTGGGAAC
GTTTTGAGAGGTATCATCCCCGTCTTATCACCAGAGAACATCGTCCACAT
CAAATTTCGTATCAACCAATGGACGAATATCGAATGGTGTGCAATACTCC
AATTCTTTAAAGGTGACGGAGTTGGGGTAGTCTATGGTCACAGACTCCCA
TTGGTCATGTTAAAACAACAACAAGGAAATCAACATATCGAACTTAGTTC
GTCAGTGGATGGCGTCTGGAACCACTGGTATGGCGTTTATTCGCCAAAGT
TGAATTACGATTACGACGTCGAGTTCCGGCACAGATACAAAGGATCGGGA
GTATACGTATTCACGATCGTCGTGAATGGAGAAATTGTAATGACCAAAGA
TAACTACCAAGCCAAGCAATTTTATGATGTCAAGATGTACACAGGTATGC
CACAAGCAGCCTTTTGTGGTGGAGTCACTATCAGCTATCTAGCAGTGacc
aattttttgtaaATGCCGTGGAAACTGTTGGTGCTGATTGGTATTTTAAA
ATTTACTCTCATTCGAATTGGTgctgaaaaatgctttaaaaagGTGCCAC
AGAATTACCATGGTGTCTCCCCATTAGTTGTCATTGATAAAGACGAAGAA
GTGAGTGGGAACGTTTTGAGAGGTATCATCCCCGTCTTATCACCAGAGAA
CATCGTCCACATCAAATTTCGTATCAACCAATGGACGAATATCGAATGGT
GTGCAATACTCCAATTCTTTAAAGGTGACGGAGTTGGGGTAGTCTATGGT
CACAGACTCCCATTGGTCATGTTAAAACAACAACAAGGAAATCAACATAT
CGAACTTAGTTCGTCAGTGGATGGCGTCTGGAACCACTGGTATGGCGTTT
ATTCGCCAAAGTTGAATTACGATTACGACGTCGAGTTCCGGCACAGATAC
AAAGGATCGGGAGTATACGTATTCACGATCGTCGTGAATGGAGAAATTGT
AATGACCAAAGATAACTACCAAGCCAAGCAATTTTATGATGTCAAGATGT
ACACAGGTATGCCACAAGCAGCCTTTTGTGGTGGAGTCACTATCAGCTAT
CTAGCAGTGaccaattttttgtaaATGCCGTGGAAACTGTTGGTGCTGAT
TGGTATTTTAAAATTTACTCTCATTCGAATTGGTgctgaaaaatgcttta
aaaagGTGCCACAGAATTACCATGGTGTCTCCCCATTAGTTGTCATTGAT
AAAGACGAAGAAGTGAGTGGGAACGTTTTGAGAGGTATCATCCCCGTCTT
ATCACCAGAGAACATCGTCCACATCAAATTTCGTATCAACCAATGGACGA
ATATCGAATGGTGTGCAATACTCCAATTCTTTAAAGGTGACGGAGTTGGG
GTAGTCTATGGTCACAGACTCCCATTGGTCATGTTAAAACAACAACAAGG
AAATCAACATATCGAACTTAGTTCGTCAGTGGATGGCGTCTGGAACCACT
GGTATGGCGTTTATTCGCCAAAGTTGAATTACGATTACGACGTCGAGTTC
CGGCACAGATACAAAGGATCGGGAGTATACGTATTCACGATCGTCGTGAA
TGGAGAAATTGTAATGACCAAAGATAACTACCAAGCCAAGCAATTTTATG
ATGTCAAGATGTACACAGGTATGCCACAAGCAGCCTTTTGTGGTGGAGTC
ACTATCAGCTATCTAGCAGTGaccaattttttgtaaATGCCGTGGAAACT
GTTGGTGCTGATTGGTATTTTAAAATTTACTCTCATTCGAATTGGTgctg
aaaaatgctttaaaaagGTGCCACAGAATTACCATGGTGTCTCCCCATTA
GTTGTCATTGATAAAGACGAAGAAGTGAGTGGGAACGTTTTGAGAGGTAT
CATCCCCGTCTTATCACCAGAGAACATCGTCCACATCAAATTTCGTATCA
ACCAATGGACGAATATCGAATGGTGTGCAATACTCCAATTCTTTAAAGGT
GACGGAGTTGGGGTAGTCTATGGTCACAGACTCCCATTGGTCATGTTAAA
ACAACAACAAGGAAATCAACATATCGAACTTAGTTCGTCAGTGGATGGCG
TCTGGAACCACTGGTATGGCGTTTATTCGCCAAAGTTGAATTACGATTAC
GACGTCGAGTTCCGGCACAGATACAAAGGATCGGGAGTATACGTATTCAC
GATCGTCGTGAATGGAGAAATTGTAATGACCAAAGATAACTACCAAGCCA
AGCAATTTTATGATGTCAAGATGTACACAGGTATGCCACAAGCAGCCTTT
TGTGGTGGAGTCACTATCAGCTATCTAGCAGTGaccaattttttgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056248-exon-scaffold_27-1491911889:158299..158552 | TCONS_00056248-exon-scaffold_27-1491911889:158299..158552 | Clytia hemisphaerica | exon |
| TCONS_00056248-exon-scaffold_27-1510915933:158299..158552 | TCONS_00056248-exon-scaffold_27-1510915933:158299..158552 | Clytia hemisphaerica | exon |
| TCONS_00056248-exon-scaffold_27-1575043694:158299..158552 | TCONS_00056248-exon-scaffold_27-1575043694:158299..158552 | Clytia hemisphaerica | exon |
| TCONS_00056248-exon-scaffold_27-1491911889:158866..158914 | TCONS_00056248-exon-scaffold_27-1491911889:158866..158914 | Clytia hemisphaerica | exon |
| TCONS_00056248-exon-scaffold_27-1510915933:158866..158914 | TCONS_00056248-exon-scaffold_27-1510915933:158866..158914 | Clytia hemisphaerica | exon |
| TCONS_00056248-exon-scaffold_27-1575043694:158866..158914 | TCONS_00056248-exon-scaffold_27-1575043694:158866..158914 | Clytia hemisphaerica | exon |
| TCONS_00056248-exon-scaffold_27-1491911889:160084..160215 | TCONS_00056248-exon-scaffold_27-1491911889:160084..160215 | Clytia hemisphaerica | exon |
| TCONS_00056248-exon-scaffold_27-1510915933:160084..160215 | TCONS_00056248-exon-scaffold_27-1510915933:160084..160215 | Clytia hemisphaerica | exon |
| TCONS_00056248-exon-scaffold_27-1575043694:160084..160215 | TCONS_00056248-exon-scaffold_27-1575043694:160084..160215 | Clytia hemisphaerica | exon |
| TCONS_00056248-exon-scaffold_27-1491911889:160695..161311 | TCONS_00056248-exon-scaffold_27-1491911889:160695..161311 | Clytia hemisphaerica | exon |
| TCONS_00056248-exon-scaffold_27-1510915933:160695..161311 | TCONS_00056248-exon-scaffold_27-1510915933:160695..161311 | Clytia hemisphaerica | exon |
| TCONS_00056248-exon-scaffold_27-1575043694:160695..161311 | TCONS_00056248-exon-scaffold_27-1575043694:160695..161311 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:158299..161311 + |
Blast
The following BLAST results are available for this feature:
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