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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056340 ID=TCONS_00056340|Name=TCONS_00056340|organism=Clytia hemisphaerica|type=transcript|length=1152bp
CTCCGGGATGTTAAGCATTTTCACGCCTGAAAGTTGGCTTAGAATCGACT
ATTTTTCCTGGTTTGATGATTGAAAAAGCTTGAAAGATATCTCATATTTG
ATAAATACTGTTCGGGAGAAAGCTAAATTGGACAATCTTACTAATATTAG
TCCGCATAAACCTCATTTGCCCTGACTTTTTAGCTGTGGGACTAGGAAGT
ACGTTGGACTTCTTTGAGATTCGCGaattaatgaaaaaagaatgagatct
ccttaaaaaaataattacagaCCAAATAATCCAGCGCTAAAAGATAAAAG
GCAAACGATAAAGGCGAACGGTAAACCGCGATCTCACGGGCGGACGGGTG
GTTTTTGAGGCGGGCGGTATTATTCTTCCGCTTCGTCATCCGCGTTCAAC
GTTTTGCTGGAAGCTGATAATAAACGTTGTGCATTAGACTTACGATTTAT
AATTGGATGAATTTCGGGTGAACAACGGATTACTGAGAAGAATGAATCGA
ATATTGCCGTTTGCTAAACTTATCGAAAATGGCGAGAAGTGCTCCAGTGT
TCTGCCGTCGTGTATTGTCctggaaataaaaatttgaaaaggttAGACTT
ACGCCAATATCTTACTTTGTAGCTGCTCCTTACGCCAATACGCCAAAAGG
AATTAGAGCCccacgccgaatatattcggaGTATCGTGCACCATTTCCAG
ACTGGCTGACaatataccgtaagttggtctaattaacgtcaacatccgtc
ttctaatttcgacatccttgaCCTTCCTTAGGCGGCAattcacaaatatc
ttcgtttcgcttTGCCCCACCGCCCCTCaaaaattgagtcggtgagtggg
taaatttgtcggatttTTTCTGTTGATGAcatttccttcgttcaaaaatt
ttattattgctgattttttgcgagcgatttctagcgcattcgcagcattt
tgaggggggtttgtacttttacggtgtgacaggattggcccttttttagt
acggtattacgggatttgacgaaaaaagagattggaaaacggtattttaa
aaacagacagtgacggtatttaggtacatttttgccctgtacaagccagt
gtgacggtgttattattttttcaattttcgggattccgggattcagcaaa
aa Run BLAST on NCBI transcript from alignment at scaffold_272:79414..80565 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056340 ID=TCONS_00056340|Name=TCONS_00056340|organism=Clytia hemisphaerica|type=transcript|length=1152bp|location=Sequence derived from alignment at scaffold_272:79414..80565 (Clytia hemisphaerica)
tttttgctgaatcccggaatcccgaaaattgaaaaaataataacaccgtc
acactggcttgtacagggcaaaaatgtacctaaataccgtcactgtctgt
ttttaaaataccgttttccaatctcttttttcgtcaaatcccgtaatacc
gtactaaaaaagggccaatcctgtcacaccgtaaaagtacaaacccccct
caaaatgctgcgaatgcgctagaaatcgctcgcaaaaaatcagcaataat
aaaatttttgaacgaaggaaatgTCATCAACAGAAAaaatccgacaaatt
tacccactcaccgactcaatttttGAGGGGCGGTGGGGCAaagcgaaacg
aagatatttgtgaatTGCCGCCTAAGGAAGGtcaaggatgtcgaaattag
aagacggatgttgacgttaattagaccaacttacggtatattGTCAGCCA
GTCTGGAAATGGTGCACGATACtccgaatatattcggcgtggGGCTCTAA
TTCCTTTTGGCGTATTGGCGTAAGGAGCAGCTACAAAGTAAGATATTGGC
GTAAGTCTaaccttttcaaatttttatttccagGACAATACACGACGGCA
GAACACTGGAGCACTTCTCGCCATTTTCGATAAGTTTAGCAAACGGCAAT
ATTCGATTCATTCTTCTCAGTAATCCGTTGTTCACCCGAAATTCATCCAA
TTATAAATCGTAAGTCTAATGCACAACGTTTATTATCAGCTTCCAGCAAA
ACGTTGAACGCGGATGACGAAGCGGAAGAATAATACCGCCCGCCTCAAAA
ACCACCCGTCCGCCCGTGAGATCGCGGTTTACCGTTCGCCTTTATCGTTT
GCCTTTTATCTTTTAGCGCTGGATTATTTGGtctgtaattatttttttaa
ggagatctcattcttttttcattaattCGCGAATCTCAAAGAAGTCCAAC
GTACTTCCTAGTCCCACAGCTAAAAAGTCAGGGCAAATGAGGTTTATGCG
GACTAATATTAGTAAGATTGTCCAATTTAGCTTTCTCCCGAACAGTATTT
ATCAAATATGAGATATCTTTCAAGCTTTTTCAATCATCAAACCAGGAAAA
ATAGTCGATTCTAAGCCAACTTTCAGGCGTGAAAATGCTTAACATCCCGG
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056340-exon-scaffold_272-1491911889:79414..80565 | TCONS_00056340-exon-scaffold_272-1491911889:79414..80565 | Clytia hemisphaerica | exon |
| TCONS_00056340-exon-scaffold_272-1510915933:79414..80565 | TCONS_00056340-exon-scaffold_272-1510915933:79414..80565 | Clytia hemisphaerica | exon |
| TCONS_00056340-exon-scaffold_272-1575043694:79414..80565 | TCONS_00056340-exon-scaffold_272-1575043694:79414..80565 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_272 | supercontig | scaffold_272:79414..80565 . |
Blast
The following BLAST results are available for this feature:
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