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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056330 ID=TCONS_00056330|Name=TCONS_00056330|organism=Clytia hemisphaerica|type=transcript|length=1035bp
CTTTCCTttttataattgttttttgttttttttttaaactatatATTCGA
CCTCACTCACAAGAGGTCATCATCAGAGTAAAAATCTAATACAGAATGGG
GACTCTAAAATCAAAGTTTTGGATAACATTTTAAAGACCTTTTTATAGCC
AGCAGAAAACTTGTAGTCGGTAACAGGCTATTGAAAGGGCCCCAAAATAC
AGGAAAAAGGTTTTTGTATCAAATGTTAGACGGCCTTTTGATTCCTCCAC
TACAGGTTGGTACAGATCGTGTTAAAATATTGTGAATTTCCGTGCTCTTT
TGATTCTAATAAAACATTTTGTATCTTTACATGGGCTAAAGTATCGATGT
GTGACTTTTGTGACTACTAGAGAGACAGAGGGACATGACACATTAAAAAA
TACCATTAAGGGGCTACACAATACTCAAACCCAGTCTCTTAGTTCACTTT
TTTATCACGTCCAttagtaaaatcaaaaattggtGCAAGTGTCTCTGGAT
ACCAAACTTGGGGCTAAACAACTTGTATCCTCCATTTGCAAGATTGCata
acatttttatttcaaaatggtTAGTGTGAAATGTGTAATTCGAACGACTT
GTCTTCGATTGATGGAATCAAAGATCAAAATGACATGAAAGCCATCTCCA
GAGCTGCGATTCTTGACATTCAAAGATACTTTGCACCACTCATCTTTTTG
GCAATCATCGACCCACGAATTATAAATCACACCATAGACTTTCATCCCAA
AATTGTTAGAACGGTTTGGAACAGATGCCACAAACTTAATCCAGAATTCA
ATATGCAGTTGTTTATTGGCGAAAACACTAGAGCTGAATCCTAACCATTG
ATATGGTCCACTTCGTCCTGCAGTATTTTCCCAGGTGATGATTTCATTTG
CTCTGAACACCTCATCTTGAACATCTCCAACATATGTTTTTCCAACACCA
TAAGTTTGAGGAAAACCTTCCCATTTGTCCATAAGTTTCAATGATGGGTG
ACGTTTACCGTTGatcaaaaaggtgtatttggTAC Run BLAST on NCBI transcript from alignment at scaffold_272:189878..199140- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056330 ID=TCONS_00056330|Name=TCONS_00056330|organism=Clytia hemisphaerica|type=transcript|length=9263bp|location=Sequence derived from alignment at scaffold_272:189878..199140- (Clytia hemisphaerica)
CTTTCCTTTTTATAATTGTTTTTTGTTTTTTTTTTAAACTATATATTCGA
CCTCACTCACAAGAGGTCATCATCAGAGTAAAAATCTAATACAGAATGGG
GACTCTAAAATCAAAGTTTTGGATAACATTTTAAAGACCTTTTTATAGCC
AGCAGAAAACTTGTAGTCGGTAACAGGCTATTGAAAGGGCCCCAAAATAC
AGGAAAAAGGTTTTTGTATCAAATGTTAGACGGCCTTTTGATTCCTCCAC
TACAGGTTGGTACAGATCGTGTTAAAATATTGTGAATTTCCGTGCTCTTT
TGATTCTAATAAAACATTTTGTATCTTTACATGGGCTAAAGTATCGATGT
GTGACTTTTGTGACTACTAGAGAGACAGAGGGACATGACACATTAAAAAA
TACCATTAAGGGGCTACACAATACTCAAACCCAGTCTCTTAGTTCACTTT
TTTATCACGTCCATTAGTAAAATCAAAAATTGGTGCAAGTGTCTCTGGAT
ACCAAACTTGGGGCTAAACAACTTGTATCCTCCATTTGCAAGATTGCATA
ACATTTTTATTTCAAAATGGTTAGTGTGAAATGTGTAATTCGAACGACTT
GTCTTCGATTGATGGAATCAAAGATCAAAATGACATGAAAGCCATCTCCA
GAGCTGCGATTCTTGACATTCAAAGATACTTTGCACCACTCATCTTTTTG
GCAATCATCGACCCACGAATTATAAATCACATCATAGACCTTCATCCCAA
AATTATTAGACCGGTTTGGAACGGATGCCACAAACTTAATCCAGAATTCA
ATATGCAGTTGTTTATTGGCGAAAACACTAGAGCTGAATCCTAACCATTG
TGTACTACCACTTCGTCCTGCAGTATTTTCCCAGGTGATGATTTCATTTG
TTCTGAACACCTCATCTTGAACATCCCCGACATATGTTTTTCCAACACCA
TAAGTTTGAGGAAAACCTTCCCATTGGCCCATAAGTTTCAATGATGGGTG
ATGTTTACCGTTGATCAAAAAGGTGTATTTGGTACCTGTATGACAAAAAA
ATAAATCATCATCTTCATTTACACCTAGCTTAACGATCACCTCTAGTGTT
TCTCGTGATAATTAGAAGCTTTGAGAGATAAATGCGAACATCCCCTGATG
GGAAGATTCCAACTGGTTTTTTTAGGCCAAGAAGCGGTAAAGAGAGTTGG
TATTGAGAGTTGTTGGGAAAATGACATGAAATTTTTTTTTAATTAGCAAT
TTAACTAAACTAAAAGTCATGTCATAGTTATGATGGTTCACAAAAAGATG
TTTAAATACTTCGATAATTCTAAGTAAACTCGTGTAAGTAGCATGTCCAA
AATGGACATATATTTGGCGTAGAGAACTTGGGGCCTTAGTCATAGTCATT
TTTTCGTCAAAAGAAACGTAGGATAAGGAGGTAGATTTCTGCATGTTAGT
AAGATTATTTTCTTGGCTTTTTTAATTTTCCTCGCCAAACTTATGTCCTA
TTTGGAGTTACACAAGAATGTCGTAAATATATCGCGATGTTTCGTGAAAG
TTCCTGCTCGCGAAAGTTTTTACGCCTAAAAAAGTAGTTTGAGTGATTGA
AAGTCAGGGAAAAGATCAAATAAGCAAATCATCGTTTTTTTAAGCCGAAT
CGGTTCTTTTCTCGACTATAATCGAGAAAAGAAAACTCAATCAAAGGAAA
ACTAAAAATAGTTACCTTATCGGCCCTTTTAACACCGGCCCTGATTTAAC
GCCGGCCCCTTTTACGTCGGCCCTAATTACACCACCGCCTGATTTAGTTT
TCTAGCTTTTAGGCTGATTTTTCCTATATAACATGGTCTAAAGATCCAGT
GATAGGCTAAAGATCCGATGATCAGCTAATTTGAATCTATCTCTGACTGT
TCGAAGTGCGTTTCATGGGAGTTGTACTTTTGTTTTACCTTTAATTGTAT
CAATATCACAAAAAACTTTGGTCGATACATCACGTTCAGGTTGAATTGTG
TGAATGCCAGACTTGCAATTGAGACATACATCCTTGATTTCTTGGCAATT
TCGATATCGCTAATGAAAAAACAAGTAGCATCATAGTATAAAAAGCATCA
TAGTATAAAAAAGCCGCGGCTTTCTTATACTATGGTAACATTGGTCAAAA
AATGGCAAACTTAGATAAGTGCACACCTAGAGCGAATGGATTTTAGTGTA
TAAAATAAGAGCTGAAAAATAACACATAATGTTTTTATTCTATACTCTAG
AGAAAAGGCAGGGATGTGTATTTTTGAATCAATCCTTTAAAAATAGATTT
CAGTACCATGAATGTCATTGTTGAAGAACTTGGGAATAGGAAAAATTGGG
AAATTTGCATACGCTTATTTGAGGGTAAAAATAGAAATTTCATACATTCA
CGCAAAAAAAGATTGCAAGATTCACGTATTGACGTGATTAAATTTGAAAA
AAATGTATAGAATACTTTCAAGTCATTTGAGCACAAAAGAGACAATAAGG
ATCTGCTAAATATAATCTACCCTACCCAAGCCCTACCCTACGGCACCCTT
TATTGATATGAAAATGCAAGCTCTCTAGCTAAGACTGTTTCGAAGTATTT
TATCAAAATTACCTCATAATCTGTTTTTTATTGCTGACAGACAGCGCAAA
AGATTCTCATTGCTTGTATTAAAAAAAAAGCCCAATATATGATAGGCTTC
TCCTGCTTCTGCTCATCCTCTAGCGAAAAAATTTTCTTATATAGGAAATA
TATATAGTATATATAGAAGTCTGCGATTCAGACTAAATATGTGAGAGACA
TGCGCGATACAAAAAATCTGTCCTCACAGGTTAAATTTCAGAACAGAAAA
AGCTAAACTGAGATAGTCAGAGATACTGACAGTAGAATTTTAGACATATA
GTTACCTTAGAACTTTTAAATATTCCTTCAGATTTCTTCTTCGAGAATAT
CTTCTGATCTTTATTTTTCAAGCAAAAACATTGATTTTCCTTTTCGACAT
AATAGCTTCCTTTCATTGTTTTTTTGCATTCCAAGATGCATTCGATTGAT
GATGGAGTGGAAATAGGTTTGGATGCTTCTTCTGTATCAATATGTGTTGT
TGTTTGTTGTTTTTCTTCGCCCAAATACCAATTTGAGTAAACAAAGCAAT
GCTGACACACAAACACTATCAAATGCATAATGATAAATCAGTGTCAAAAA
TTGATATTATTAAAGTTAGTACAAACTCATTGTGAAATATGTCTTCACCA
TATCCCAATAAGCAAAAGTACAGTAAAAATCCTCGACGAGAATAACAAAA
ACTTGAACATTTTAGGTTCCTCAATCAATGGTTCGTCAAATTTATTTTAG
AGGTGATAATATTTAATTGTGATGAACTAACATTTACTATAGCAATTGAG
AATATATCAAGAACATAATAATTTGAAAAATTCCGTGTAAAGTAACACCG
AAAATTCAAACAAAGAATATATTTTGAAATGTTTGTAAAAGGTGATTACT
TTACCATCTTTGATGATTTTAATCAGAGCTCTTTCTGAGAATAAATCTCC
TTTTTTTATTCATGCTTGAATATATGGGCTATGCATCAGTTTTATAAATA
TTCCATGAAATATTATGAATTCCATAAATACAAACAAGAGCCGCAAAGAT
GGAGATAAATATTTCCTTTACAAATGATAAAATAATTGATGTACTCAAAA
GATTTCAAAGTGCTTTAAATCTCAGATAACATCAAGCAACACAAGCCCTT
AAGAATTTCAAAAATGTATTTATGTAATTGCCAGTATTTCAGGTTTTGAG
AAAAAAATCTCATTTTTATTTACTGGGAAACATTTTCATAATCTGAAAGA
ATGTCGATAGGAAAGAATTCCCCCTAACAGAAGCCATTTTATGATTTCCA
AAAGCATGCTGCAAAAGCAAACAATATCACATACCATACTTGGAAACAAT
CATAATTTCCAAAAAAATGTCAGGAAAGAAAAAAAGTTGTCATGCCAGGA
AATCACTTGAGTTTTCTTCATTTTTTAAATGCATATGTGGAAGAAAATAT
CAAGTTCACGACAAAAGCTTTCCACGTTTTAAATGCACATAAGAAAATCT
CCAAATTCAAAACACAAGTTTCCACGTTTAAAATGAACGCGGAAAAAGAT
CTCCAAATAAATTCACGACTAAAGTTTTCCAGGTTTTAAATGCACGCGAG
GAAAAAAATCTCCAAGTTCAAGAAAAATTTTAATTGTACATGTGAGGTGA
TTTCAATTGATTACATCCATATTCAATGAAATAAACAATTTCAGAAGTTA
ACATTCTTCATATTGGCCGTGGTGTTCCGCTTTATCAGCTTAAAAAAAGT
TTGAAATTAACTGCAACAGAATTATTCTTCCCACAAAGAGTTTTCACTAA
CTGTTNTATCAGCTTAAAAAAAGTTTGAAATTCAGGAAATTAACAGCAAC
AGAATTATTCTCCCCACGGGACAAAGAGTTTTCACTAACTATCACTAACC
AGTTAATTCATTGTTGTAGATAAAAAGACCAAGGGAAATTCAATCATTAA
CCAGTCAATTTTGCTCCATGTTTAAATTTTTAGCTAATCAGTTCATCAAC
CATTGTTGCATTGTCACATTGATTGGGTGCAAACTTTTTTGATGTTGCAA
GCATGAAATTTTTCAGGTATACCATGGTCAGATTTTTCACAGTCACTTGC
CTTCTTACAATTTATGTAAATTTACAAGCAAAATTGAAGTTAGTTTGTTG
TGAAAGTTGACAAAATGTCCTGTTTTTCCAAGACCAAGACCAAGAGATTG
TATCTCTCATTCCAAACCAACAGAATGTAAACAAAACATCAAATCCAGGA
AGGAATGATAAACAACGTTCATCATCGATCATTCCTTGTGATAATCGTAC
AAAAATCATGATCCAATTCAACTCATTAAAGCATAAAAACCAAAAAAAAA
TAGCGAAAGAGCAAAAGTTGTTGTCTACAGCCAATTCGATTGACTTCCAA
ATTTGCCATACTCACCAACTTTGCCAAATCCACAATTTCAATCAAAAGAT
CACAGCTTCATGTGATGGACACGTATGGAGGTAAGTTCCAAAAACGCCAA
GAATGCCAGATTCACCACATCTTTTTAATTTGGCATTTATGGCACTCAAA
TTTTGCCACATTTGCCAAATTTTTGTCAACGAATGCAAAATATTTGGCAA
TCAGGGTAAAAACGGCATATTTTGAAGTCAATCGAATTGGCTGCTATTTT
TTGCTGCCATCTTTGTTTTGACGGTTAGAATCAAAGCAGTATGGTCCGAT
CAACAATACGCTTCCGAAACCGGCTTCGTTGCCCCATCGGTAAGGAAAAT
AGAGTGCCGTATGCATATTTTCCACGGACGTTTCTCGAAAAAATGACGTC
TTCCGCCTCAAAAAAAGAACATTCTACTGTTTTTACCGCCGGAGCTTGAT
TTAAAAAGAGACTCATGCACAATAAACTCACGAAATTGACCAAAACCGGC
GTTAGACTTGGAGAAGAAAAATTACGGTATTAACAAATATTCCCCTATAA
TAGGGAAATATTTGATAAGAAACGCCGAAACTAATAACATTGTGTTACTA
TTGTTATTTTTTATCAAACCATTGTAGTTTTAACTTTGCTTGTTGTGTTT
ATTAGGCAAAAGAACTCGTTTGAAAAGAAAGTCATTCTATTTGTCTGTTA
AGAAACATCCCTGGAAACGTTTACAATGGAAAACTACAGTATAAATCCTT
TTTAATTTCGCCATAGTGAAAGTATTACAGTCAGTATTCTGCGGTGGCGG
CGCCGGCGGTGAGGAAAAAAATTAGAAAACGATTACGAAGTACTCGATAC
GGTGGACGAACTCACCAAATTTGATTTACAAATTGCACGCTCGTATAACC
ACGGACGATTTTCGCGAGTTTTCTTTGGATTCCGTCATATATCTTTGTGT
CTCTAGCTTCACAGATTGGATTTTTTCTTTATTTTCTTATAAGCATATAC
TTTATAAGAATAAAACAATATCTCTTGATAGATGGTGATATAACTTTCGG
TAATTAGTTTTTACAAAGTAAACAAGCAATGGCACACAATATGAGCATAT
TTATCTTTCTTATAAGCATATACTTTATGAGAATCAAATCAATAACTCTT
GATAGACGGTGATATACCATCGCGACCATCGATACCCTTCAGTTATTTAT
TCTTAAGAATTAAACAACCATTGTTCTTAAATTGGTCTTATTTTTTTAGC
TACTTTGAGCCTCGTTGTTCTTATAAAATTGTTTCATCAAGGCTCGATGT
AAAGTAGATTTCAGATTAGCTTCCATCTCTACTTCTTGTTTTTCCCATAC
AGTTTAAACTTTAGGCGAAATTTACGACTTCAAGTCGTCTTGTTTCTGTT
AAAATAAAATAAAATTAATCGGGGATAATATTGGTCAGGGATTAAAAAAC
TGGGTAAAAGTTTTGGGCAGGGGTAAAAATCACGAAAAAGTTTTTCGTCG
GGGATAAAAAAACCCGGTAAAAATTTTGGTAGGGTGATAAGATATCGGGG
GAAAATTTGTCAGGGGAAAATTTTGTCACCCCCTCAAAATTTTCGTCACT
TCCCCTAACCTGATAGCAGCTGTGGAGTTTTCTTAAAGCGACACGCTGAA
GCTCTAAAGATCGCTAAAAACTGTATATTTTCGCCCACGTCTTTAGAACT
TCAGCGTACTGGACCAGAAAATACGCAATCTGTCATCAGGTTTTTTTTCC
CTGACATTTTTCTCCCCGATAAGTAATCATGTTTGTGTTTTGGACAATGA
TTTAGTATCTTTGAAGTCTCTTAATCATCGTTGGATCAGTAATCACCTTG
TGCACTTGTTATTATTTCGTTTGAAAAGCTTTCCAAGAAAGCGGAGCTCG
TCTAAGAGAAATATCAAAGAAGAAGACATAAAAAAGCAAGTGCTTAGCTA
CAATCAGTGCCATAATATATTGGCACTTTTGGCTAATTTACCATTTTTTG
AAAATTGAAGTTCGAGCAAGAATGTCAATTTTTAGGCCTTCAACTTGATT
TCATCGATTATTTCGATCTGTGAGAGATTTATTGGTTTCTAGGCTATATT
TCAAGCCCTACTGGATCATTTTTGAACTTTTGGATCCTCAGATCCTAAGG
TCCTAGTCTAGCGTTAAAACTCAGAGTTAAAAACTCTACCCTTGGAACCT
TTTTGAAAACGTCTATTAATTACCCTATGAAAATTCACTATTCTCATGAG
AAAATTGACATGAAAAGAATCCCAATATCAATCCCCAAGGGCTTTTTTTG
TTCAATCCTGTCGTACTTTTTCAAATTCCTAGATGCTAAAGGTCCCTACT
AGTATTATCTATGATATTAGAAGTCAATATAGAGCCAATGTTTCTTGTTT
TCATTGAGTGTTGTTACAACTTTTCATAAATATTTCGGCCTTACAGGCCT
TTTTCAACATAAAAATGAATTTTTTGACAAGGTTTTTATTTACATCGGCT
ATACATAATTAAAAATGAATTGAAAATTAAAGTTAAAATGATCGTTAAAA
GTTAATATTAAAAATTACGGCAATTAATATACAATTAAATAAAAGCTAAA
TTATTAAATAATGGAGAATTAATAAAAAGATAAAAAAACTGCAATACAAA
TCTATTGAAAATCAAATTCTAGATGGAAAAAGGACAAAGAGACAAAATAT
TAAAAAACTAGACGGTGAAATGGATATCAAGCCTAGGAGAAAGTGAGGGT
GAAATAACAATTGAGGCGTTGTTTCACCCGAACTGCATTTCTGGAAACGG
GATTCGTAGTTATTAAACCTGATTCCCCAAAGAAAAAACTTAAAAAGTGT
CTTTGGATTTTATATCTAATCGAGTTTTTCATCCTCAATTTAGAGATAAC
TGAAAAAAATTAACTTTTTTCTCAATATTTGTACAAAAACTAAGATTATG
AGTTTAAGAGATTCTAAAGAAAAATCCCAAGAAGCTTTTCTAGTTCAATC
CATTGGGAACAGAGTACCGAAATTATTCTTTCAAAATTCAAAAGCAATGG
GTGGCTTCAACTTCTTTGAAGTAGGTAATGTTAAAATTCTAAAGATTTTA
TTTATATCCTGTTTAAGTTTTTAAAATTTAACCGAAATTATTACCATTAG
ATAAAAAATATTACTGGCTTTCAGATATGTCATACATACCTTAATCATAT
ATTAAATAATTATTTTGAAATAATAAAAAAAAATTTTACTTGCAGCCCAA
AATTAGGCCTTTGAAATCGGACTTTTAAAATGCAGGGAAAATTTATCCAA
ATTTGAGTAAATTTAAGAGAAAAAAAAACGATCTTACGCGTGTTTTTCGG
CAAATTTTGACTATTTCTAGGCAAAATATGGTCACAATTTAAAGATTTTA
CACCCTCATAGTGCACTATTTCTTACCCGCCTTGCTCATTTTGACAGTGA
CAGTGCACTTTGAGAAGGTTGGACGTACTTTAGGCCGCTTATCTTGGGTA
ACCTCCCCCCCCGGGAATGTAGCTGTCGCTATGAACATTTTGTATCTTTA
CATAGGCTGTAATATCGATGCATGACTTTTACGACAGCTAGAGAGAAAGA
GGGACATGAAACATTAAAAATGACCATTAAGGGGTTACACAATACTCAAA
CACAGTCCCTTAGTTCACTTATTTGTGATGGATTATATCACGTCCATTAG
TAAAATCAAAAATTGGTGTAAGTGTCTCTGGATACCAACCTTTGGGCTAA
ACATCTTGTATCCTCCATTTGCAATGATTGCATAACATTTTTATTTCAAA
ATGGTTAGTGTGAAATGTGTAATTCGAACGACTTGTCTTCGATTGATGGA
ATCAAAGATCAAAATGACATAATAGCCATTGCTGCGACACTTGATATTCA
AAGATACTTTGCACCACTCATCTTTTTGACAATCATCAACCCACGAATTA
TAAACCACACCATAGACTTTCATCCCAAAATTGTTAGAACGGTTTGGAAC
AGATGCCACAAACTTAATCCAGAATTCAATATGCAGTTGTTTATTGGCGA
AAACACTAGAGCTGAATCCTAACCATTGATATGGTCCACTTCGTCCTGCA
GTATTTTCCCAGGTGATGATTTCATTTGCTCTGAACACCTCATCTTGAAC
ATCTCCAACATATGTTTTTCCAACACCATAAGTTTGAGGAAAACCTTCCC
ATTTGTCCATAAGTTTCAATGATGGGTGACGTTTACCGTTGATCAAAAAG
GTGTATTTGGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056330-exon-scaffold_272-1575043694:198411..199140 | TCONS_00056330-exon-scaffold_272-1575043694:198411..199140 | Clytia hemisphaerica | exon |
| TCONS_00056330-exon-scaffold_272-1575043694:189878..190182 | TCONS_00056330-exon-scaffold_272-1575043694:189878..190182 | Clytia hemisphaerica | exon |
| TCONS_00056330-exon-scaffold_272-1510915933:198411..199140 | TCONS_00056330-exon-scaffold_272-1510915933:198411..199140 | Clytia hemisphaerica | exon |
| TCONS_00056330-exon-scaffold_272-1510915933:189878..190182 | TCONS_00056330-exon-scaffold_272-1510915933:189878..190182 | Clytia hemisphaerica | exon |
| TCONS_00056330-exon-scaffold_272-1491911889:198411..199140 | TCONS_00056330-exon-scaffold_272-1491911889:198411..199140 | Clytia hemisphaerica | exon |
| TCONS_00056330-exon-scaffold_272-1491911889:189878..190182 | TCONS_00056330-exon-scaffold_272-1491911889:189878..190182 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_272 | supercontig | scaffold_272:189878..199140 - |
Blast
The following BLAST results are available for this feature:
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