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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056524 ID=TCONS_00056524|Name=TCONS_00056524|organism=Clytia hemisphaerica|type=transcript|length=1471bp
CCGCTACAAGATGCAGCGACAGATTAGCCTTCACCGTAAGGCAATGCAAC
AAGCAcacatcatcaaaacaaaacaaaaagtttttattaacGTTCAAGGA
TCTAAATATGAGACATACGAGGGCACGTTACAACAGTTCCCGAACACTTT
ATTAGGTGATCCAGTAGCACGATCTTATTACTACAGCACTCAGTTGAAAG
CATATTATTTTGATATCAAACCAGAATTATTCGAAGCTGTCTTGTTTTTT
TACCAATCCAGTGGCATACTCTCCAAGCCAACTTTCTCCAGTGACGTCGA
ATTCAAACAGTCTCTGCAATTCTTTGGTTTGATCAAATCgaacaagaaaa
aaatcgaTGTTAATGAGATGACATTTCGTGATAAATTATGGGACATTTTA
GAACATCCACATCGTTCCAAAATTGGGATGTATGGTGCATACATCTCCTT
TGCTATCATTTTAATCTCAGTAGCCATGTTTTGTTGGGAAACTGAATGGC
ACCGAGGACGTCCTCATTCCCCTCATGAACGTAAATCAACATGGTTCATA
GGGGAATGTTTATACATCACTTTCTTTGCGATCGAATATCTATTACGTTT
ATGGAGCTCACCGAATCGAATACGTTTCGCAGTAACATTCCTCGGTATCA
TCGATTTATTCTCCATTGTGCCCTTCTTCATAGCATTATTCTACTCGTTT
TACAGTCAAATATCTAATCTAAGAATCTTACGCTTACTACAGATTCTACG
TATCATCAAACTGTCCCGATATAACTCGGGTTTAAAGATTCTTGCACAAG
CTATATTATCGTGTCGTCGGCAAATGTTTTCTTTAACAATCCTCTTCATG
ATCACCATCGTCTTTGTCTCGACGTTCGTCTACGTCGCAGAATCAGACGT
CATTGACGGTAAAGGCTTCGAAAGTATTCCGGAGACAATGTGGTTTGCCG
TCATCTCCATGACAACTGTCGGTTATGGTGATGTCGTTCCGAAAACTACA
CTGGGTAAATTATCCGGAGCTGTCGGTATCTTCATGGGAACTGTGGTACT
CTTTCATCTCTTCTTACCCATTTATCTGATGTACTTCTCATTATTTTACG
gacaagaaaaagagaaaaacaggtTAGAGCAAGAAGCGAAACATaaagcc
aaaatattaaaaggATTTTCAGAAGCTACCATCTCTTCGCCTGAAACTTT
CTATTTCCGTAAAAAGAATTTGACACTTTCTCCAGCGGTCAGTAGTCGTA
TGAGTCGATTGAGTGTGGATTCAGATTCCAGCACGTCTGATATCGATCTG
CATCCGGAGGACGGAAACTATAGTTTAGCAGTGCCTGTTCGGAGGCTAGC
AGGGACATCATCTAGTTATGTGCTTTAGCTTAAGCAAGGGGATtgattta
aagaaatatttttgtacacATGAAGTATAATTTCTAATTAAACTCCGGTT
AAAGGAGTTTCttgaaatcag Run BLAST on NCBI protein sequence of TCONS_00056524-protein >TCONS_00056524-protein ID=TCONS_00056524-protein|Name=TCONS_00056524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
RYKMQRQISLHRKAMQQAHIIKTKQKVFINVQGSKYETYEGTLQQFPNTL
LGDPVARSYYYSTQLKAYYFDIKPELFEAVLFFYQSSGILSKPTFSSDVE
FKQSLQFFGLIKSNKKKIDVNEMTFRDKLWDILEHPHRSKIGMYGAYISF
AIILISVAMFCWETEWHRGRPHSPHERKSTWFIGECLYITFFAIEYLLRL
WSSPNRIRFAVTFLGIIDLFSIVPFFIALFYSFYSQISNLRILRLLQILR
IIKLSRYNSGLKILAQAILSCRRQMFSLTILFMITIVFVSTFVYVAESDV
IDGKGFESIPETMWFAVISMTTVGYGDVVPKTTLGKLSGAVGIFMGTVVL
FHLFLPIYLMYFSLFYGQEKEKNRLEQEAKHKAKILKGFSEATISSPETF
YFRKKNLTLSPAVSSRMSRLSVDSDSSTSDIDLHPEDGNYSLAVPVRRLA
GTSSSYVL Run BLAST on NCBI transcript from alignment at scaffold_276:33718..35188 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056524 ID=TCONS_00056524|Name=TCONS_00056524|organism=Clytia hemisphaerica|type=transcript|length=1471bp|location=Sequence derived from alignment at scaffold_276:33718..35188 (Clytia hemisphaerica)
ctgatttcaaGAAACTCCTTTAACCGGAGTTTAATTAGAAATTATACTTC
ATgtgtacaaaaatatttctttaaatcaATCCCCTTGCTTAAGCTAAAGC
ACATAACTAGATGATGTCCCTGCTAGCCTCCGAACAGGCACTGCTAAACT
ATAGTTTCCGTCCTCCGGATGCAGATCGATATCAGACGTGCTGGAATCTG
AATCCACACTCAATCGACTCATACGACTACTGACCGCTGGAGAAAGTGTC
AAATTCTTTTTACGGAAATAGAAAGTTTCAGGCGAAGAGATGGTAGCTTC
TGAAAATccttttaatattttggctttATGTTTCGCTTCTTGCTCTAacc
tgtttttctctttttcttgtcCGTAAAATAATGAGAAGTACATCAGATAA
ATGGGTAAGAAGAGATGAAAGAGTACCACAGTTCCCATGAAGATACCGAC
AGCTCCGGATAATTTACCCAGTGTAGTTTTCGGAACGACATCACCATAAC
CGACAGTTGTCATGGAGATGACGGCAAACCACATTGTCTCCGGAATACTT
TCGAAGCCTTTACCGTCAATGACGTCTGATTCTGCGACGTAGACGAACGT
CGAGACAAAGACGATGGTGATCATGAAGAGGATTGTTAAAGAAAACATTT
GCCGACGACACGATAATATAGCTTGTGCAAGAATCTTTAAACCCGAGTTA
TATCGGGACAGTTTGATGATACGTAGAATCTGTAGTAAGCGTAAGATTCT
TAGATTAGATATTTGACTGTAAAACGAGTAGAATAATGCTATGAAGAAGG
GCACAATGGAGAATAAATCGATGATACCGAGGAATGTTACTGCGAAACGT
ATTCGATTCGGTGAGCTCCATAAACGTAATAGATATTCGATCGCAAAGAA
AGTGATGTATAAACATTCCCCTATGAACCATGTTGATTTACGTTCATGAG
GGGAATGAGGACGTCCTCGGTGCCATTCAGTTTCCCAACAAAACATGGCT
ACTGAGATTAAAATGATAGCAAAGGAGATGTATGCACCATACATCCCAAT
TTTGGAACGATGTGGATGTTCTAAAATGTCCCATAATTTATCACGAAATG
TCATCTCATTAACAtcgatttttttcttgttcGATTTGATCAAACCAAAG
AATTGCAGAGACTGTTTGAATTCGACGTCACTGGAGAAAGTTGGCTTGGA
GAGTATGCCACTGGATTGGTAAAAAAACAAGACAGCTTCGAATAATTCTG
GTTTGATATCAAAATAATATGCTTTCAACTGAGTGCTGTAGTAATAAGAT
CGTGCTACTGGATCACCTAATAAAGTGTTCGGGAACTGTTGTAACGTGCC
CTCGTATGTCTCATATTTAGATCCTTGAACgttaataaaaactttttgtt
ttgttttgatgatgtgTGCTTGTTGCATTGCCTTACGGTGAAGGCTAATC
TGTCGCTGCATCTTGTAGCGG Coding sequence (CDS) from alignment at scaffold_276:33718..35188 >TCONS_00056524 ID=TCONS_00056524|Name=TCONS_00056524|organism=Clytia hemisphaerica|type=CDS|length=1377bp|location=Sequence derived from alignment at scaffold_276:33718..35188 (Clytia hemisphaerica)
CTAAAGCACATAACTAGATGATGTCCCTGCTAGCCTCCGAACAGGCACTG
CTAAACTATAGTTTCCGTCCTCCGGATGCAGATCGATATCAGACGTGCTG
GAATCTGAATCCACACTCAATCGACTCATACGACTACTGACCGCTGGAGA
AAGTGTCAAATTCTTTTTACGGAAATAGAAAGTTTCAGGCGAAGAGATGG
TAGCTTCTGAAAATccttttaatattttggctttATGTTTCGCTTCTTGC
TCTAacctgtttttctctttttcttgtcCGTAAAATAATGAGAAGTACAT
CAGATAAATGGGTAAGAAGAGATGAAAGAGTACCACAGTTCCCATGAAGA
TACCGACAGCTCCGGATAATTTACCCAGTGTAGTTTTCGGAACGACATCA
CCATAACCGACAGTTGTCATGGAGATGACGGCAAACCACATTGTCTCCGG
AATACTTTCGAAGCCTTTACCGTCAATGACGTCTGATTCTGCGACGTAGA
CGAACGTCGAGACAAAGACGATGGTGATCATGAAGAGGATTGTTAAAGAA
AACATTTGCCGACGACACGATAATATAGCTTGTGCAAGAATCTTTAAACC
CGAGTTATATCGGGACAGTTTGATGATACGTAGAATCTGTAGTAAGCGTA
AGATTCTTAGATTAGATATTTGACTGTAAAACGAGTAGAATAATGCTATG
AAGAAGGGCACAATGGAGAATAAATCGATGATACCGAGGAATGTTACTGC
GAAACGTATTCGATTCGGTGAGCTCCATAAACGTAATAGATATTCGATCG
CAAAGAAAGTGATGTATAAACATTCCCCTATGAACCATGTTGATTTACGT
TCATGAGGGGAATGAGGACGTCCTCGGTGCCATTCAGTTTCCCAACAAAA
CATGGCTACTGAGATTAAAATGATAGCAAAGGAGATGTATGCACCATACA
TCCCAATTTTGGAACGATGTGGATGTTCTAAAATGTCCCATAATTTATCA
CGAAATGTCATCTCATTAACAtcgatttttttcttgttcGATTTGATCAA
ACCAAAGAATTGCAGAGACTGTTTGAATTCGACGTCACTGGAGAAAGTTG
GCTTGGAGAGTATGCCACTGGATTGGTAAAAAAACAAGACAGCTTCGAAT
AATTCTGGTTTGATATCAAAATAATATGCTTTCAACTGAGTGCTGTAGTA
ATAAGATCGTGCTACTGGATCACCTAATAAAGTGTTCGGGAACTGTTGTA
ACGTGCCCTCGTATGTCTCATATTTAGATCCTTGAACgttaataaaaact
ttttgttttgttttgatgatgtgTGCTTGTTGCATTGCCTTACGGTGAAG
GCTAATCTGTCGCTGCATCTTGTAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056524-exon-scaffold_276-1491911889:33718..35188 | TCONS_00056524-exon-scaffold_276-1491911889:33718..35188 | Clytia hemisphaerica | exon |
| TCONS_00056524-exon-scaffold_276-1510915933:33718..35188 | TCONS_00056524-exon-scaffold_276-1510915933:33718..35188 | Clytia hemisphaerica | exon |
| TCONS_00056524-exon-scaffold_276-1575043694:33718..35188 | TCONS_00056524-exon-scaffold_276-1575043694:33718..35188 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:33718..35188 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
| GO:0051260 | protein homooligomerization |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0005216 | ion channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0006813 |
potassium ion transport |
| biological_process |
GO:0051260 |
protein homooligomerization |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
BLAST of TCONS_00056524 vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2) HSP 1 Score: 183.726 bits (465), Expect = 3.092e-51 Identity = 129/400 (32.25%), Postives = 209/400 (52.25%), Query Frame = 2
Query: 74 QKVFINVQGSKYETYEGTLQQFPNTLLGDPVARSYYYSTQLKAYYFDIKPELFEAVLFFYQSSGILSKPT------FSSDVEF----KQSLQFF----GLIKSNKKKIDVNEMTFRDKLWDILEHPHRSKIGMYGAYISFAIILISVAMFCWET--------EWHRGRPHSPHE--------RKST-----WFIGECLYITFFAIEYLLRLWSSPNRIRFAVTFLGIIDLFSIVPFFIALFYSFYSQISNXXXXXXXXXXXXXXX------------XXYNSGLKILAQAILSCRRQMFSLTILFMITIVFVSTFVYVAESDVIDGKGFESIPETMWFAVISMTTVGYGDVVPKTTLGKLSGAVGIFMGTVVLFHLFLPIYLMYFSLFYGQEKEKNRLEQ 1132
++V IN+ G ++ET TL QFP TLLGDP R Y+ Y+FD F+A+L++YQS G L +P FS ++ F +++++ F G IK ++ + NE F+ ++W + E+P S A +S +ILIS+ FC ET E G + H ++ST +FI E L I +F+ E+L+R ++ P++ F + IID+ +I+P+FI L + + + + L I+++ SR++ GL+IL Q + + R++ L I ++ S+ VY AE+D + + F SIP+ W+AV+SMTTVGYGD+VP T GK+ G++ G V+ L +P+ + F+ FY +E E Q
Sbjct: 33 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENE--FQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQ-FPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAG-VLTIALPVPVIVSNFNYFYHRETEGEEQAQ 428
The following BLAST results are available for this feature:
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