TCONS_00056485 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056485
Unique NameTCONS_00056485
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length984

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056485 ID=TCONS_00056485|Name=TCONS_00056485|organism=Clytia hemisphaerica|type=transcript|length=984bp
CAACATACACATAGACAACCAATCAAAATGGCTTCTGCAGGAGCACTCCT
CTTAAAACAAAAAGTCCCATTCGTCATGGAGCTAGACGGTCAAATTAACG
AAATCAAATTCTCAGTCCGGGGCAAGGGGACAGGGGACGCAACAACTGGC
ACCATTGACGCCAAATTTGTATGTACCACTGGTGAATTGCCAGTACCGTG
GGCTTCAATTTCGAGTGCGATGTCATATGGAGCTCTCTGTTTCACCAAAT
ATCCAGACAATATTAAAGATTTCTTCAAATCAACCCTTCCTGACGGTTAT
ATTCAAGAAAGGACTATTAGCTATGAAAATGATGGTTCATGGAAAGTTCG
TGGTGTAATCACTTACGAACATGGTTCCATTTACAATCGCGTCACACTTA
AAGGAGAAGGATTCAAAAGAGACGGACACATCCTTCAAAAAAGATACGAC
TTTTGCTGTCCGAATAATGCAGTTTACGTTTTGCCGGATAAAGAAAACAA
CGGACTCCGAGTTGTTTTCAATAAGGCTTTCAAATTGAAAGATGGAGGAT
ACCATTGTGCTAAACACGAACAACAGAATATTCCACTGGGCGGAGGAGTT
GTTGATATTCCAATTTATCATCATCTTCATGTTGGAAACATTTTCTCGAG
AGATCCAGAAGAAACACGTGACCACTTGTGTTTAATCGAAAAGCTCACAG
CTATAGATCTTGAGACATACAATAACTGAACATAttattcttcatttaat
ttataTTTACCCTACCGATATCATTGACATTAGCTTTAAATTGAAGTTAG
AGTACGTTTTATTTAAGCGGGTGTAAAACCTTTCCCCacaccttttcaaa
aattacgtcatgTGCAACATACCTCtacttcaaaatatttctacttctgg
taattgattcccagaggagttcataagaagttGACTCTATCTAAAAAGTC
TCAAGGAATATACTCTCGGGTAACTAATAGCGGG
Run BLAST on NCBI

protein sequence of TCONS_00056485-protein

>TCONS_00056485-protein ID=TCONS_00056485-protein|Name=TCONS_00056485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
QHTHRQPIKMASAGALLLKQKVPFVMELDGQINEIKFSVRGKGTGDATTG
TIDAKFVCTTGELPVPWASISSAMSYGALCFTKYPDNIKDFFKSTLPDGY
IQERTISYENDGSWKVRGVITYEHGSIYNRVTLKGEGFKRDGHILQKRYD
FCCPNNAVYVLPDKENNGLRVVFNKAFKLKDGGYHCAKHEQQNIPLGGGV
VDIPIYHHLHVGNIFSRDPEETRDHLCLIEKLTAIDLETYNN
Run BLAST on NCBI

transcript from alignment at scaffold_276:211069..218741-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056485 ID=TCONS_00056485|Name=TCONS_00056485|organism=Clytia hemisphaerica|type=transcript|length=7673bp|location=Sequence derived from alignment at scaffold_276:211069..218741- (Clytia hemisphaerica)
CAACATACACATAGACAACCAATCAAAATGGCTTCTGCAGGAGCACTCCT
CTTAAAACAAAAAGTCCCATTCGTCATGGAGCTAGACGGTCAAATTAACG
AAATCAAATTCTCAGTCCGGGGCAAGGGGACAGGGGACGCAACAACTGGC
ACCATTGACGCCAAATTTGTATGTACCACTGGTGAATTGCCAGTACCGTG
GGCTTCAATTTCGAGTGCGATGTCATATGGAGCTCTGTAAGTATCACAGT
ACTCTTAGAGGGGAAGAAAGGTCCTATTCCAAAGAGTATACAATTTCCCC
CAGAAAGACTCTTCTACACTTTACAGATCATCTAACTAATGACGCAATGT
TTCGAGCTCCAACCCTTACCCTAACTGATAAGATCAAAATAATCAAAAAT
CGAAAATATCGAAAAGGTCAAAAAGGAAGAATAAAAAAATTCCACTCCAG
AAGCAATTACCCCGAGATTACTTACTTCCCAGAAAATAGATACTACCTGG
TACCCAGAATGGTTGTAACCCCTCTGGGAAATTATTACTCCCTGCTGAAA
AAAATCTTACTTCTATANTTAAGGAATTTTTACATGGCAGTTCTGAAATG
TCATTTATAGACAGTGATTGATTTTTCAATCAAGATTTGCACTTGGATAT
TATTACAACCACGTAGTTTTTGGAAAAAGAATGAATCAACATTAAGAAAA
ATTTCAAAACAATGACGTCAACAATCTAGTCCCAGTCCTAAGTAAAACGG
TATAAATGAATTGAAAATCTTGAAGTTTAAACATCCGAGCAACAACATAC
ACATAGACAACCAATCAAAATGGCTTCTGCAGGAGCACTCCTCTTAAAAC
AAAAAGTCCCATTCGTCATGGAGCTAGACGGTCAAATTAACGAAATCAAA
TTCTCAGTCCGGGGCAAGGGGACAGGGGACGCAACAACTGGCACCATTGA
CGCCAAATTTGTATGTACCACTGGTGAATTGCCAGTACCGTGGGCTTCAA
TTTCGAGTGCGATGTCATATGGAGCTCTGTAAGTATCACAGTACTCTTAG
AGGGGAAGAAAGGTCCTATTCCAAAGAGTATACAATTTCCCCCAGAAAGA
CTCTTCTACACTTTACAGATCATCTAACTAATGACGCAATGTTTCGAGCT
CCAACCCTTACCCTAACTGATAAGATCAAAATAATCAAAAATCGAAAATA
TCGAAAAGGTCAAAAAGGAAGAATAAAAAAATTCCACTCCAGAAGCAATT
ACCCCGAGATTACTTACTTCCCAGAAAATAGATACTACCTGGTACCCAGA
ATGGTTGTAACCCCTCTGGGAAATTATTACTCCCTGCTGAAAAAAATCTT
ACTTCTATAATAAAAGTGGACATCCTTAAAAAAAAGACAGTCCTTGTAAC
TTTCGTTTGCTAACTGAAAATTTTGAAAGTTTTTTATGCTTTTCAGAAAA
AACAGGCTTTCTACTTTTTATACTATCTTGTCACTGAGATACCCAGCTGA
CACACAACGTTGTTTTAACGTTAATACAAGAAAGCCTAAGTGGCGTAAAG
ACCCAGCAGTGTTAGCGCTGTCAGCATATTTTTCCGCTGCAGAATCACCA
CACAACAGGGGCAAACTTATTCAATTTATTGACTCGAGTCGGGCAAGAAA
TAAAGATTTAATTACTTTACTTACCATAGTCGTGAAATTGATTTTAGTGT
TTGAACATAAAAGTTATGTTTTAGGTTCTTTAACACTTTCAACAAAGAAT
TGACTTTATAAATTGCTTTTTAATGAAATCCCTTAAAGGGAATAGCGCTA
TACTTATAGTAGGGGTCGGAGTTGCTGGTAATTCCATGGTATACTCTGAA
ATACATGCTGATGTCAGCCCGAAAGCTGATTGGCTTANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTGGTTTTTGTTATGATCCAGCACTCCTAAATACTCCTCCGTATGGGTG
TTTGTGCCAATGCTAGATCAGCATTTCATAAATATACCATGCGTCGTTCC
CTTTAAGAGTAATTAAGAATTTCATTGCAAAAATGACGTTATGAACTTTT
AAAAGACGTTAATAATATGTTGCATCACCTTCTTTTATAAAAAGTGCTAA
GCTTTAATGGGTAATTAACCTTTTTGTTTTTTTCAAAATGTCCGCAAAGA
ATTGAACTGTTTTACATTTTTCGGAAAATTTTTCTAAATTAATGCATCAA
AAGTTATGGCTGTTTTTCTATGAAAAATTGGGATGGAAAATTGGTCAAAA
AGCACTATTTTCAAGATTTTGAAGGAAACAAGCTTTTAGAAAAATTTTCC
GAAAAAATAATTTTAGTTCAATAAAAGATACACCATATACCGCAAAAAAA
ATTTCAAAATGTTTTTTCTTCGCCGAAACTAAGCTCTTCAAAGTTGAAAT
ACTCTTCACTACAAAAGTCTTTATTTGCTTCTTCATCAAATTTTTTCATT
GTGATTCTTAAATTTTCAGACTCAAGGATAATTGGCCTAACAGAAAATGT
ATAACAAGCCACAGTTTTGTGGGCTACATCAAGTAGAACTTTATATTTTG
TAAGTGGCAAATTTATGGTCAGAGCCCTTAAAGGCCCAATGCGCTGCTCT
GTTCGGCCAATAACGTTGTGAACATTAGATAAACGGGGGATAAACGTTAA
AACAACGTCTAGGCAATGCGACTAACGGTCTTCATGAAACACGCGTTTAT
TCTTTCAGCTGTTTCACCAAATATCCAGACAATATTAAAGATTTCTTCAA
ATCAACCCTTCCTGACGGTTATATTCAAGAAAGGACTATTAGCTATGAAA
ATGATGGTTCATGGAAAGTTCGTGGTGTAATCACTTACGAACATGGTTCC
ATTTACAATCGCGTCACACTTAAAGGAGAAGGATTCAAAAGAGACGGACA
CATCCTTCAAAAAAGATACGACTTTTGCTGTCCGAATAATGCAGTTTACG
TTTTGCCGGATAAAGAAAACAACGGACTCCGAGTTGTTTTCAATAAGGTT
AGCTTTTTCACCTTTGTCAATTACTCTCCCGGGGGGGGGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGGGGGGGGGGGGGGGGTACTTAGGTATGTGAGATGACGGATA
TGTTCGAGCATGGATTTATCATAGAACTCTGGATATACACAACGAGCTGG
TTTTTCATCGATTTCTCATGTTCTAGCCTTGTCCGCAGTAATGACAATAT
TGTTCACCCTCCTCCATTCACTAATAATTTTTCGTAGATTTATTTATTGC
ATTTTTCATCAAAACACAGCTATACAATTCCCAAATGAGACTTAAAGATC
TCTCAAGAGAGTCAAATGAATCAAATTGATTGCTAATGATATGTCGTTAT
GACGTTTCAAGCTGTGAGAAAGATGCGACAAACATGCTATGTATAAGAAA
TTGAATGTTAACACNTATCTTCCTTTTCGCTATCAAAAACAATGAAAATA
TTTGTAAAATACCATTATCTACAATCATACCGCCGAAATATATTGGTAAT
TTTTGGTATTTTAAACACCCCTGTCTCTGTGCCCCAGTGGGTGTTGAGTA
CCCAGTGGGGTGAGAATGAAAAAACCTGAAATTCACTGGGGTGAAAAATC
TTCGCTCAAATATTGAGTGGGTGGCGAAAATTTCACTGACATTCACTGGG
GTGAGAAAGAATTTTTAGCATGAGCTAAATTTTGGTTAGCCTGTTAGACG
AAAACCGCTTAATTACTAAGCGGTTTTCGTCTAACAGTTCTATCGTGTTT
TAACGATGGAAGGTACTGGCTAACTTTTGGTCTAGTCAAAATCTGCTTCT
TACATGCTACTAAAGTAGAAATATCATCTNTCAAGATACTCCAGTCTAAC
ATATGTCAATCCTAGCTCTTCCAAGGAAAAAATTGGAAAGATATTGCCAA
CCTTATTTTCAGCGTCATTCTAGAATTTTAATCAATTTTTCTTGTTTGAT
GAAGTTTTTTCCACATTTAATTTCATAAATGTATTCGTTAACCTTTCTTG
TTTTCATTTTCAAAGTTGCATCCGGTAAATATACTAAAACAAGAAGTTAC
AGGACTTTTTAGAAATGGGATTATTAATCATTTTTCAAAATCAGGGACCT
CGAGCCGCTAGGACAGTTGTCCTTTGCGGACAAAGCTAGAACATCGATTG
TTTTCTAAAACAATGGAAAGACAATAGTTCGCTCTCCACCGTTTTATTTG
ATGTTTATCCAGAGTTCTATGATAAATCCATGGTTCGAGTCAAAGTTCGA
AAATCAACCCTTTCGAAAATTTCGTCCATTTTTCGACGTTTTTGCCAGCC
CTTGAGAGAGCAAAGCAAAATTTCAGCCAACATTTTTCAGCCAACATTTT
TTATAACTTTAATCCAAATTTCCAGAATTCATGATCCTTTGAGTCAAACA
ATTTTTGATTTTCGTAATTTTAGAACCATTTTACAGGGGCTCTATTGATT
TTTTATGGGTTTTTTTTACCCCTTTTAGGAACTTTAGAGGGAGTGAAAAA
AGGATCCTTATGGGTTGCACCAACCCAGCACCTATTTTGCCTAGTACCCA
CCCCTTCCCTTCCAGTTTCAACTGAATAATCATTAACAACCTTCAAGTAC
AATATCTTCCTTTTCGCTATCAAAAACAATGAAAATATTTGTAAAATACC
ATTATCTACAATCATACCGCCGAAATATATTGGTAATTTTTGGTATTTTA
AACACCCCTGTCTCTGTGCCCCAGTGGGTGTTGAGTACCCAGTGGGGTGA
GAATGAAAAAACCTGAAATTCACTGGGGTGAAAAATCTTCGCTCAAATAT
TGAGTGGGTGGCGAAAATTTCACTGACATTCACTGGGGTGAGAAAGAATT
TTTAGCATGAGCTAAATTTTGGTTAGCCTGTTAGACGAAAACCGCTTAAT
TACTAAGCGGTTTTCGTCTAACAGTTCTATCGTGTTTTAACGATGGAAGG
TACTGGCTAACTTTTGGTCTAGTCAAAATCTGCTTCTTACATGCTACTAA
AGTAGAAATATCATCTTGATCAGGTGGATATACTCTCACAGCACTGTAAC
AGGAAATGTAATGAGGTCTGGGAGAAGGGGGCTATAGGGGAGCAGTATGG
TTATATCAAATTTTATAAACTCTGGGACCTAGTAATGTTTAGTCAACATG
GTTAAAGTATTTCAGTATCTACGCAAGTGAGAAAGCCTCTCTTTTGAGGC
TAGAACCTAGCTTTAAAGAAAGAAAGGGCCAAGTACAACCGTGGTTTGCG
CTGACAGAGAAAGTTTTGATTTTCAGCCCCTCTCGTTTGGCACTTTCCAC
GTTTTAAAATGACCATAGAAGTCGGGTTGAATACAGCAAATATATTTAAG
TGGAACATTTGATGGCGAGCGAGCGAAGCGATCAAATTTTTTTTGGCTTT
TTCGGATATTTCACTTTAAGAAAAGGGGAAGTAGAAAATTCTAGCGGGGC
GATTTTTTGAAAGAAAAGTTCTACTGGGGTACGTTAAAATAAGGGCTTTT
CGAGTGGGGTATGTGTAAACTTTTTATCATTTTCAATGGGGTGCTTTTTT
ACTACAACATTCCAGTGGGGTGAGTGATTTGTCCAGTGGGGCTGAAAAAT
GAGCCATTTTTGGAAAAATAATTCACTGGGGTGACCAGTGGAGTGGATCC
CATTGGGTCACAGAGGCAGGGGTGTTTTTAACGTTTTTCAGAGAATTGCA
GTTTCAGTACTTCCACTTTGCTTCATTGAATTTTTCGATTTGGGAAGGGT
TAAGTGACTCCCAGGCTATATTCTCAACCTTATTGGAACATTTTTGAGCT
TTTATATCCTGAGTCATAAGTCTGATGNGGGGTTAAGTGACTTCCAGGCT
ATATTCTCAGCCTTATTGGAACATTTTTGAGCTTTTAGATCCTGAGTCTT
AAGTCTGATGTTAAAGCTCACAGTTAAAATTCTACTTGCTTACTGTACTT
CAAAGCACTTAAAAATCCCTTGCAGTTTTAAAGTTTTGAGGGTATTTCCC
TTTTGTGTCAATTTTTTCGGCGCCGCGATTGTAGTTATGCAACTGGACAC
ACTTTACACCATTTCCAGCTGCGAAGGCACCTAATTAAAAAGGGTTGAGT
TAGACTTTAAATTTACAATATTATTGCAAAATGGAGTTTCTAATTTTGTT
ATACATTTGCACAGGCTTTCAAATTGAAAGATGGAGGATACCATTGTGCT
AAACACGAACAACAGAATATTCCACTGGGCGGAGGAGTTGTTGATATTCC
AATTTATCATCATCTTCATGTTGGAAACATTTTCTCGAGAGATCCAGAAG
AAACACGTGACCACTTGTGTTTAATCGAAAAGCTCACAGCTATAGATCTT
GAGACATACAATAACTGAACATATTATTCTTCATTTAATTTATATTTACC
CTACCGATATCATTGACATTAGCTTTAAATTGAAGTTAGAGTACGTTTTA
TTTAAGCGGGTGTAAAACCTTTCCCCACACCTTTTCAAAAATTACGTCAT
GTGCAACATACCTCTACTTCAAAATATTTCTACTTCTGGTAATTGATTCC
CAGAGGAGTTCATAAGAAGTTGACTCTATCTAAAAAGTCTCAAGGAATAT
ACTCTCGGGTAACTAATAGCGGG

Coding sequence (CDS) from alignment at scaffold_276:211069..218741-

>TCONS_00056485 ID=TCONS_00056485|Name=TCONS_00056485|organism=Clytia hemisphaerica|type=CDS|length=2187bp|location=Sequence derived from alignment at scaffold_276:211069..218741- (Clytia hemisphaerica)
GCTTTCAAATTGAAAGATGGAGGATACCATTGTGCTAAACACGAACAACA
GAATATTCCACTGGGCGGAGGAGTTGTTGATATTCCAATTTATCATCATC
TTCATGTTGGAAACATTTTCTCGAGAGATCCAGAAGAAACACGTGACCAC
TTGTGTTTAATCGAAAAGCTCACAGCTATAGATCTTGAGACATACAATAA
CTGACTGTTTCACCAAATATCCAGACAATATTAAAGATTTCTTCAAATCA
ACCCTTCCTGACGGTTATATTCAAGAAAGGACTATTAGCTATGAAAATGA
TGGTTCATGGAAAGTTCGTGGTGTAATCACTTACGAACATGGTTCCATTT
ACAATCGCGTCACACTTAAAGGAGAAGGATTCAAAAGAGACGGACACATC
CTTCAAAAAAGATACGACTTTTGCTGTCCGAATAATGCAGTTTACGTTTT
GCCGGATAAAGAAAACAACGGACTCCGAGTTGTTTTCAATAAGCAACATA
CACATAGACAACCAATCAAAATGGCTTCTGCAGGAGCACTCCTCTTAAAA
CAAAAAGTCCCATTCGTCATGGAGCTAGACGGTCAAATTAACGAAATCAA
ATTCTCAGTCCGGGGCAAGGGGACAGGGGACGCAACAACTGGCACCATTG
ACGCCAAATTTGTATGTACCACTGGTGAATTGCCAGTACCGTGGGCTTCA
ATTTCGAGTGCGATGTCATATGGAGCTCTGCTTTCAAATTGAAAGATGGA
GGATACCATTGTGCTAAACACGAACAACAGAATATTCCACTGGGCGGAGG
AGTTGTTGATATTCCAATTTATCATCATCTTCATGTTGGAAACATTTTCT
CGAGAGATCCAGAAGAAACACGTGACCACTTGTGTTTAATCGAAAAGCTC
ACAGCTATAGATCTTGAGACATACAATAACTGACTGTTTCACCAAATATC
CAGACAATATTAAAGATTTCTTCAAATCAACCCTTCCTGACGGTTATATT
CAAGAAAGGACTATTAGCTATGAAAATGATGGTTCATGGAAAGTTCGTGG
TGTAATCACTTACGAACATGGTTCCATTTACAATCGCGTCACACTTAAAG
GAGAAGGATTCAAAAGAGACGGACACATCCTTCAAAAAAGATACGACTTT
TGCTGTCCGAATAATGCAGTTTACGTTTTGCCGGATAAAGAAAACAACGG
ACTCCGAGTTGTTTTCAATAAGCAACATACACATAGACAACCAATCAAAA
TGGCTTCTGCAGGAGCACTCCTCTTAAAACAAAAAGTCCCATTCGTCATG
GAGCTAGACGGTCAAATTAACGAAATCAAATTCTCAGTCCGGGGCAAGGG
GACAGGGGACGCAACAACTGGCACCATTGACGCCAAATTTGTATGTACCA
CTGGTGAATTGCCAGTACCGTGGGCTTCAATTTCGAGTGCGATGTCATAT
GGAGCTCTGCTTTCAAATTGAAAGATGGAGGATACCATTGTGCTAAACAC
GAACAACAGAATATTCCACTGGGCGGAGGAGTTGTTGATATTCCAATTTA
TCATCATCTTCATGTTGGAAACATTTTCTCGAGAGATCCAGAAGAAACAC
GTGACCACTTGTGTTTAATCGAAAAGCTCACAGCTATAGATCTTGAGACA
TACAATAACTGACTGTTTCACCAAATATCCAGACAATATTAAAGATTTCT
TCAAATCAACCCTTCCTGACGGTTATATTCAAGAAAGGACTATTAGCTAT
GAAAATGATGGTTCATGGAAAGTTCGTGGTGTAATCACTTACGAACATGG
TTCCATTTACAATCGCGTCACACTTAAAGGAGAAGGATTCAAAAGAGACG
GACACATCCTTCAAAAAAGATACGACTTTTGCTGTCCGAATAATGCAGTT
TACGTTTTGCCGGATAAAGAAAACAACGGACTCCGAGTTGTTTTCAATAA
GCAACATACACATAGACAACCAATCAAAATGGCTTCTGCAGGAGCACTCC
TCTTAAAACAAAAAGTCCCATTCGTCATGGAGCTAGACGGTCAAATTAAC
GAAATCAAATTCTCAGTCCGGGGCAAGGGGACAGGGGACGCAACAACTGG
CACCATTGACGCCAAATTTGTATGTACCACTGGTGAATTGCCAGTACCGT
GGGCTTCAATTTCGAGTGCGATGTCATATGGAGCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035583XLOC_035583Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056485-proteinTCONS_00056485-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056485-exon-scaffold_276-1575043694:218506..218741TCONS_00056485-exon-scaffold_276-1575043694:218506..218741Clytia hemisphaericaexon
TCONS_00056485-exon-scaffold_276-1575043694:215295..215583TCONS_00056485-exon-scaffold_276-1575043694:215295..215583Clytia hemisphaericaexon
TCONS_00056485-exon-scaffold_276-1575043694:211069..211527TCONS_00056485-exon-scaffold_276-1575043694:211069..211527Clytia hemisphaericaexon
TCONS_00056485-exon-scaffold_276-1510915933:218506..218741TCONS_00056485-exon-scaffold_276-1510915933:218506..218741Clytia hemisphaericaexon
TCONS_00056485-exon-scaffold_276-1510915933:215295..215583TCONS_00056485-exon-scaffold_276-1510915933:215295..215583Clytia hemisphaericaexon
TCONS_00056485-exon-scaffold_276-1510915933:211069..211527TCONS_00056485-exon-scaffold_276-1510915933:211069..211527Clytia hemisphaericaexon
TCONS_00056485-exon-scaffold_276-1491911889:218506..218741TCONS_00056485-exon-scaffold_276-1491911889:218506..218741Clytia hemisphaericaexon
TCONS_00056485-exon-scaffold_276-1491911889:215295..215583TCONS_00056485-exon-scaffold_276-1491911889:215295..215583Clytia hemisphaericaexon
TCONS_00056485-exon-scaffold_276-1491911889:211069..211527TCONS_00056485-exon-scaffold_276-1491911889:211069..211527Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:211069..218741 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.137333	0	0.519287	0.126995	0.0753765	0.0595838	0.283205	0.0854979	0.0773095	0.119693	0.164222	0.0305472	0	0	0	0	0.288725	0.271547	0	0	0.0442635	0	6.63774	13.0338	9.31457	16.2947	236.21	120.296	1.66445	3.89779
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000786Green_fluorescent_prot
IPR011584GFP-related
IPR009017GFP
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0008218bioluminescence
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008218 bioluminescence
biological_process GO:0006091 generation of precursor metabolites and energy
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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