TCONS_00056498 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00056498
Unique Name	TCONS_00056498
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1811

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_276:344732..347706-
coding sequence from alignment at scaffold_276:344732..347706-

transcript sequence

>TCONS_00056498 ID=TCONS_00056498|Name=TCONS_00056498|organism=Clytia hemisphaerica|type=transcript|length=1811bp
TCTACaccgtttattattttttatcctGTTTACAGTATCTCAATTCCTTT
TGTTTGTATAGATAAATTTATCCAGAAATGGTAGATAAATATAATCAcaa
tcttgaatttcttgaatATAATGATGAAAGACACCATCAGCACAACAAAG
ACCCAGTTCTGGAACAGCTTCCTGAGGAACTCAATATAAAATCAACAAGA
AAAGATCATGGACTGTATCTCAACACATctgaaaaagaagaacattATCC
ATCTGAGAGGGAAAACCACGTTGAGTTTCATCCTAGAAGATACACTGAAG
AAGATATCAGATATTCTGAACATGATCTAGCTAACAAAAATCATCCCTAT
AGAAAGGAAAATTATGAGGAACATATCTCTATATCAGCCTTTGTAGGTTT
GCAAAAGGAAAGCTTGACAAAAGATAACCACGCAAAGATCTTTGAAGATG
ATCAGAGTAATAAAATTAACGGATACTCATTTAAAGATGAGCACTCAGCA
AATTGTCTCTCCGGTTTGGAACATAACTCTAAATTGaatttatctttaaa
taataataatagtgcTGATAAGTCTCATGACCaacccattgaaaataatc
ttGACAGCGCTGTTCACACTCCACTGGAGTTTCCTACAATTACAAATGGT
CCTAGACCTAAAAAAGCTGCTCCTAAAAAGAGATATACCCGCACCCGATA
TTCTAATGAAGAACTACAAGTTGCCCTATCAAAATGTAGAGAAGGTCTCA
GCATTAGAGAGTGTTCAAAGAAATATGGTATCCCTAAAAGCACACTGTGG
GATAAATTGTCTTGTCGTACACCAGCAACTGTCCTTAGACCTGGTAGATC
ATTCAAAGTTTCAGATGCAGTAGAGAACAGGCTAGTCAATTGGATTCTCA
AGATGAACGAGGATGGATTCAAAGTCCAAGAAAAGCAAATCATAGAAGCC
GTGAAATTGTTTCATGACAAATCAGAAGGTGTCAATGCAAATGATAATAG
TCACAGTAAACCTGGGAAGGCTTGGTATAAAAACTTCTTAAAACGTTACC
CAGCAGCACAACACAATCTGAGTGTCAATCATCAAAAAGCAGAATACTCA
ATTGAAATGTTGCAGGCTTGGTATGACGAAACTGTCGATACTGAAGTTCC
TGTTTTAGTAGAGAGTGTTGAATCTGTACAACCTAAACAACCAGAACCTA
CTACACCAAATCAAATCAGGTCAGTCCTTGATCATATAGAGCAGACTATT
GGTGAAGAGAAATTAAATTATTACAGACAATGGAAAGAAAATGGTGAACT
TTCAAAGAAAGATCCTTTATACACTGCTTGGTACGCTCTTGCAATGGATC
TAGATCGTATTCAtaattccaataaaaacaaaaggaaaaggAAATCGGAA
CAGCCGAGGGTTAATGGAAACTATGTACATCAACATCATCATTTAGAGAA
CTCAAAAGTGGAACATCATCCATTGGAAAATGATTTGATAGATCTGAACT
CAACAACAACTACCGCTCCAAATGTTGAATTCACTGaaaataaagacaat
agaaCTGTTGAAAATAACTTACCGCAGTCACATTATAATGGAGCATATGT
GagcaatgaaagtgaaagtgttcCACCAGATGATCAACTTTTGaaaaccT
GCTAAACTTAATCCTGAAAAGACCGTAAAAATCCTTTCAAATTCAATACC
TGTTTTTACCTGAATTTATTTACATatgagaatttttatttttttgtata
ttgATATTCAAAGAGCTTGTGTGTAGattccaaatatatttttctattca
aatttttatca

Run BLAST on NCBI

protein sequence of TCONS_00056498-protein

>TCONS_00056498-protein ID=TCONS_00056498-protein|Name=TCONS_00056498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=525bp
MVDKYNHNLEFLEYNDERHHQHNKDPVLEQLPEELNIKSTRKDHGLYLNT
SEKEEHYPSERENHVEFHPRRYTEEDIRYSEHDLANKNHPYRKENYEEHI
SISAFVGLQKESLTKDNHAKIFEDDQSNKINGYSFKDEHSANCLSGLEHN
SKLNLSLNNNNSADKSHDQPIENNLDSAVHTPLEFPTITNGPRPKKAAPK
KRYTRTRYSNEELQVALSKCREGLSIRECSKKYGIPKSTLWDKLSCRTPA
TVLRPGRSFKVSDAVENRLVNWILKMNEDGFKVQEKQIIEAVKLFHDKSE
GVNANDNSHSKPGKAWYKNFLKRYPAAQHNLSVNHQKAEYSIEMLQAWYD
ETVDTEVPVLVESVESVQPKQPEPTTPNQIRSVLDHIEQTIGEEKLNYYR
QWKENGELSKKDPLYTAWYALAMDLDRIHNSNKNKRKRKSEQPRVNGNYV
HQHHHLENSKVEHHPLENDLIDLNSTTTTAPNVEFTENKDNRTVENNLPQ
SHYNGAYVSNESESVPPDDQLLKTC

Run BLAST on NCBI

transcript from alignment at scaffold_276:344732..347706-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00056498 ID=TCONS_00056498|Name=TCONS_00056498|organism=Clytia hemisphaerica|type=transcript|length=2975bp|location=Sequence derived from alignment at scaffold_276:344732..347706- (Clytia hemisphaerica)
TCTACACCGTTTATTATTTTTTATCCTGTTTACAGTATCTCAATTCCTTT
TGTTTGTATAGATAAATTTATCCAGAAATGGTAGATAAATATAATCACAA
TCTTGAATTTCTTGAATATAATGATGAAAGACACCATCAGCACAACAAAG
ACCCAGTTCTGGAACAGCTTCCTGAGGAACTCAATATAAAATCAACAAGA
AAAGATCATGGACTGTATCTCAACACATCTGAAAAAGAAGAACATTATCC
ATCTGAGAGGGAAAACCACGTTGAGTTTCATCCTAGAAGATACACTGAAG
AAGATATCAGATATTCTGAACATGATCTAGCTAACAAAAATCATCCCTAT
AGAAAGGAAAATTATGAGGAACATATCTCTATATCAGCCTTTGTAGGTTT
GCAAAAGGAAAGCTTGACAAAAGATAACCACGCAAAGATCTTTGAAGATG
ATCAGAGTAATAAAATTAACGGATACTCATTTAAAGATGAGCACTCAGCA
AATTGTCTCTCCGGTTTGGAACATAACTCTAAATTGAATTTATCTTTAAA
TAATAATAATAGTGCTGATAAGTCTCATGACCAACCCATTGAAAATAATC
TTGACAGCGCTGTTCACACTCCACTGGAGTTTCCTACAATTACAAATGGT
CCTAGACCTAAAAAAGCTGCTCCTAAAAAGAGATATACCCGCACCCGATA
TTCTAATGAAGAACTACAAGTTGCCCTATCAAAATGTAGAGAAGGTCTCA
GCATTAGAGAGTGTTCAAAGAAATATGGTATCCCTAAAAGCACACTGTGG
GATAAATTGTCTTGTCGTACACCAGCAACTGTCCTTAGACCTGGTAGATC
ATTCAAAGTTTCAGATGCAGTAGAGAACAGGTATTTTATATCTTGCAAAC
AACTTTAGCTCAAACATAATACCTTCCATTTAAAGGAACTGGTATANCCG
CACCCGGTATTCTAATGAAGAACTACAAGTTGCCCTATCAAAATGTAGAG
AAGGTCTCAGCATTAGAGAGTGTTCAAAGAAATATGGTATCCCTAAAAGC
ACACTGTGGGATAAATTGTCTTGTCGTACACCAGCAACTGTCCTTAGACC
TGGTAGATCATTCAAAGTTTCAGATGCAGTAGAGAACAGGTACTTTATAT
CTTGCAAACCACTTTAGCTCAAACATAATACCTTCCTTTTAAAGGAACTG
GTATAAAATATTTATATGTTGACCTGTATAAGCCTGAGAATATGTCTCAC
TATTATTATCAATTTTTTTTACCAGAATTGTAGGCCATTAAAGAATTTGA
AGTGGTTTAAAAGTTGACGATGATGATTCTTGATTAGTTGCTTGATTTTA
TCTCACAGGATGCAACTTTAAAATTGTTTTTATTTTGTTAACCTTTCCAG
GCTAGTCAATTGGATTCTCAAGATGAACGAGGATGGATTCAAAGTCCAAG
AAAAGCAAATCATAGAAGCCGTGAAATTGTTTCATGACAAATCAGAAGGT
GTCAATGCAAATGATAATAGTCACAGTAAACCTGGGAAGGCTTGGTATAA
AAACTTCTTAAAACGTTACCCAGCAGCACAACACAATCTGAGTGTCAATC
ATCAAAAAGCAGAATACTCAATTGAAATGGTATGGTTTTATTTATCAGAG
AAGTAATTTTAAAGGAAAATTTGATGATCCATAAAATCATAAATTTGACT
TTTGGGAAAATCCAGGAAAATCTAGATGATTCTAATCTGTTGATTAATCA
GGGTTAAATTTGACCTTTAAAAATCTAGATCAGAACTTTTTCCTATTATT
ACAAGGTGTCCAGTTCATTCCTCAAACTTTGAATATTAGTATAACTTTCA
ATATTCTTTAAGACTTCTCTGGCAAAAAGAAAGTGATAATAAATATAGAG
AGAAAAATATATATTACAAGTTTGTTTTAAATTTAAAAAGTTGTTATTGA
CTCTCCAAAATTAAATAATATAAGCTACTAAAATCGCTTACCTCTAACGA
ATTAACTTTTTAGTTGCAGGCTTGGTATGACGAAACTGTCGATACTGAAG
TTCCTGTTTTAGTAGAGAGTGTTGAATCTGTACAACCTAAACAACCAGAA
CCTACTACACCAAATCAAATCAGGTCAGTCCTTGATCATATAGAGCAGAC
TATTGGTGAAGAGAAATTAAATTATTACAGACAATGGAAAGAAAATGGTG
AACTTTCAAAGAAAGATCCTTTATACACTGCTTGGTACGCTCTTGCAATG
GATCTAGATCGTATTCATAATTCCAATAAAAACAAAAGGAAAAGGAAATC
GGAACAGCCGAGGGTTAATGGAAACTATGTACATCAACATCATCATTTAG
AGAACTCAAAAGTGGAACATCATCCATTGGAAAATGATTTGATAGATCTG
AACTCAACAACAACTACCGCTCCAAATGTTGAATTCACTGAAAATAAAGA
CAATAGAACTGTTGAAAATAACTTACCGCAGTCACATTATAATGGAGCAT
ATGTGAGCAATGAAAGTGAAAGTGTTCCACCAGATGATCAACTTTTGGTA
GGTTCAAAGGAAACTAATTCAATGTCTACAGAAGATCATACAAATTTTAT
AAAGCCCCATCGAAGAAGAACTATGATGCTATCGTATAGTTCAAAATGAT
AATTTATTGCTAATTCTTTGTTATCACTATTATCCTCTTGCTTCATTCAA
CTTCCCCCGAGCAAAGATTACTAAGTAGTTTTTGAAATAACAAAAACAAG
CAAAGAAAATCTTCCTGCTTTTGCCTACCGTGATATATCCACAATTTTTT
ATTTCAGAAAACCTGCTAAACTTAATCCTGAAAAGACCGTAAAAATCCTT
TCAAATTCAATACCTGTTTTTACCTGAATTTATTTACATATGAGAATTTT
TATTTTTTTGTATATTGATATTCAAAGAGCTTGTGTGTAGATTCCAAATA
TATTTTTCTATTCAAATTTTTATCA

Coding sequence (CDS) from alignment at scaffold_276:344732..347706-

>TCONS_00056498 ID=TCONS_00056498|Name=TCONS_00056498|organism=Clytia hemisphaerica|type=CDS|length=6312bp|location=Sequence derived from alignment at scaffold_276:344732..347706- (Clytia hemisphaerica)
AAAACCTGCTAATTGCAGGCTTGGTATGACGAAACTGTCGATACTGAAGT
TCCTGTTTTAGTAGAGAGTGTTGAATCTGTACAACCTAAACAACCAGAAC
CTACTACACCAAATCAAATCAGGTCAGTCCTTGATCATATAGAGCAGACT
ATTGGTGAAGAGAAATTAAATTATTACAGACAATGGAAAGAAAATGGTGA
ACTTTCAAAGAAAGATCCTTTATACACTGCTTGGTACGCTCTTGCAATGG
ATCTAGATCGTATTCATAATTCCAATAAAAACAAAAGGAAAAGGAAATCG
GAACAGCCGAGGGTTAATGGAAACTATGTACATCAACATCATCATTTAGA
GAACTCAAAAGTGGAACATCATCCATTGGAAAATGATTTGATAGATCTGA
ACTCAACAACAACTACCGCTCCAAATGTTGAATTCACTGAAAATAAAGAC
AATAGAACTGTTGAAAATAACTTACCGCAGTCACATTATAATGGAGCATA
TGTGAGCAATGAAAGTGAAAGTGTTCCACCAGATGATCAACTTTTGGCTA
GTCAATTGGATTCTCAAGATGAACGAGGATGGATTCAAAGTCCAAGAAAA
GCAAATCATAGAAGCCGTGAAATTGTTTCATGACAAATCAGAAGGTGTCA
ATGCAAATGATAATAGTCACAGTAAACCTGGGAAGGCTTGGTATAAAAAC
TTCTTAAAACGTTACCCAGCAGCACAACACAATCTGAGTGTCAATCATCA
AAAAGCAGAATACTCAATTGAAATGATGGTAGATAAATATAATCACAATC
TTGAATTTCTTGAATATAATGATGAAAGACACCATCAGCACAACAAAGAC
CCAGTTCTGGAACAGCTTCCTGAGGAACTCAATATAAAATCAACAAGAAA
AGATCATGGACTGTATCTCAACACATCTGAAAAAGAAGAACATTATCCAT
CTGAGAGGGAAAACCACGTTGAGTTTCATCCTAGAAGATACACTGAAGAA
GATATCAGATATTCTGAACATGATCTAGCTAACAAAAATCATCCCTATAG
AAAGGAAAATTATGAGGAACATATCTCTATATCAGCCTTTGTAGGTTTGC
AAAAGGAAAGCTTGACAAAAGATAACCACGCAAAGATCTTTGAAGATGAT
CAGAGTAATAAAATTAACGGATACTCATTTAAAGATGAGCACTCAGCAAA
TTGTCTCTCCGGTTTGGAACATAACTCTAAATTGAATTTATCTTTAAATA
ATAATAATAGTGCTGATAAGTCTCATGACCAACCCATTGAAAATAATCTT
GACAGCGCTGTTCACACTCCACTGGAGTTTCCTACAATTACAAATGGTCC
TAGACCTAAAAAAGCTGCTCCTAAAAAGAGATATACCCGCACCCGATATT
CTAATGAAGAACTACAAGTTGCCCTATCAAAATGTAGAGAAGGTCTCAGC
ATTAGAGAGTGTTCAAAGAAATATGGTATCCCTAAAAGCACACTGTGGGA
TAAATTGTCTTGTCGTACACCAGCAACTGTCCTTAGACCTGGTAGATCAT
TCAAAGTTTCAGATGCAGTAGAGAACAGAAAACCTGCTAATTGCAGGCTT
GGTATGACGAAACTGTCGATACTGAAGTTCCTGTTTTAGTAGAGAGTGTT
GAATCTGTACAACCTAAACAACCAGAACCTACTACACCAAATCAAATCAG
GTCAGTCCTTGATCATATAGAGCAGACTATTGGTGAAGAGAAATTAAATT
ATTACAGACAATGGAAAGAAAATGGTGAACTTTCAAAGAAAGATCCTTTA
TACACTGCTTGGTACGCTCTTGCAATGGATCTAGATCGTATTCATAATTC
CAATAAAAACAAAAGGAAAAGGAAATCGGAACAGCCGAGGGTTAATGGAA
ACTATGTACATCAACATCATCATTTAGAGAACTCAAAAGTGGAACATCAT
CCATTGGAAAATGATTTGATAGATCTGAACTCAACAACAACTACCGCTCC
AAATGTTGAATTCACTGAAAATAAAGACAATAGAACTGTTGAAAATAACT
TACCGCAGTCACATTATAATGGAGCATATGTGAGCAATGAAAGTGAAAGT
GTTCCACCAGATGATCAACTTTTGGCTAGTCAATTGGATTCTCAAGATGA
ACGAGGATGGATTCAAAGTCCAAGAAAAGCAAATCATAGAAGCCGTGAAA
TTGTTTCATGACAAATCAGAAGGTGTCAATGCAAATGATAATAGTCACAG
TAAACCTGGGAAGGCTTGGTATAAAAACTTCTTAAAACGTTACCCAGCAG
CACAACACAATCTGAGTGTCAATCATCAAAAAGCAGAATACTCAATTGAA
ATGATGGTAGATAAATATAATCACAATCTTGAATTTCTTGAATATAATGA
TGAAAGACACCATCAGCACAACAAAGACCCAGTTCTGGAACAGCTTCCTG
AGGAACTCAATATAAAATCAACAAGAAAAGATCATGGACTGTATCTCAAC
ACATCTGAAAAAGAAGAACATTATCCATCTGAGAGGGAAAACCACGTTGA
GTTTCATCCTAGAAGATACACTGAAGAAGATATCAGATATTCTGAACATG
ATCTAGCTAACAAAAATCATCCCTATAGAAAGGAAAATTATGAGGAACAT
ATCTCTATATCAGCCTTTGTAGGTTTGCAAAAGGAAAGCTTGACAAAAGA
TAACCACGCAAAGATCTTTGAAGATGATCAGAGTAATAAAATTAACGGAT
ACTCATTTAAAGATGAGCACTCAGCAAATTGTCTCTCCGGTTTGGAACAT
AACTCTAAATTGAATTTATCTTTAAATAATAATAATAGTGCTGATAAGTC
TCATGACCAACCCATTGAAAATAATCTTGACAGCGCTGTTCACACTCCAC
TGGAGTTTCCTACAATTACAAATGGTCCTAGACCTAAAAAAGCTGCTCCT
AAAAAGAGATATACCCGCACCCGATATTCTAATGAAGAACTACAAGTTGC
CCTATCAAAATGTAGAGAAGGTCTCAGCATTAGAGAGTGTTCAAAGAAAT
ATGGTATCCCTAAAAGCACACTGTGGGATAAATTGTCTTGTCGTACACCA
GCAACTGTCCTTAGACCTGGTAGATCATTCAAAGTTTCAGATGCAGTAGA
GAACAGAAAACCTGCTAATTGCAGGCTTGGTATGACGAAACTGTCGATAC
TGAAGTTCCTGTTTTAGTAGAGAGTGTTGAATCTGTACAACCTAAACAAC
CAGAACCTACTACACCAAATCAAATCAGGTCAGTCCTTGATCATATAGAG
CAGACTATTGGTGAAGAGAAATTAAATTATTACAGACAATGGAAAGAAAA
TGGTGAACTTTCAAAGAAAGATCCTTTATACACTGCTTGGTACGCTCTTG
CAATGGATCTAGATCGTATTCATAATTCCAATAAAAACAAAAGGAAAAGG
AAATCGGAACAGCCGAGGGTTAATGGAAACTATGTACATCAACATCATCA
TTTAGAGAACTCAAAAGTGGAACATCATCCATTGGAAAATGATTTGATAG
ATCTGAACTCAACAACAACTACCGCTCCAAATGTTGAATTCACTGAAAAT
AAAGACAATAGAACTGTTGAAAATAACTTACCGCAGTCACATTATAATGG
AGCATATGTGAGCAATGAAAGTGAAAGTGTTCCACCAGATGATCAACTTT
TGGCTAGTCAATTGGATTCTCAAGATGAACGAGGATGGATTCAAAGTCCA
AGAAAAGCAAATCATAGAAGCCGTGAAATTGTTTCATGACAAATCAGAAG
GTGTCAATGCAAATGATAATAGTCACAGTAAACCTGGGAAGGCTTGGTAT
AAAAACTTCTTAAAACGTTACCCAGCAGCACAACACAATCTGAGTGTCAA
TCATCAAAAAGCAGAATACTCAATTGAAATGATGGTAGATAAATATAATC
ACAATCTTGAATTTCTTGAATATAATGATGAAAGACACCATCAGCACAAC
AAAGACCCAGTTCTGGAACAGCTTCCTGAGGAACTCAATATAAAATCAAC
AAGAAAAGATCATGGACTGTATCTCAACACATCTGAAAAAGAAGAACATT
ATCCATCTGAGAGGGAAAACCACGTTGAGTTTCATCCTAGAAGATACACT
GAAGAAGATATCAGATATTCTGAACATGATCTAGCTAACAAAAATCATCC
CTATAGAAAGGAAAATTATGAGGAACATATCTCTATATCAGCCTTTGTAG
GTTTGCAAAAGGAAAGCTTGACAAAAGATAACCACGCAAAGATCTTTGAA
GATGATCAGAGTAATAAAATTAACGGATACTCATTTAAAGATGAGCACTC
AGCAAATTGTCTCTCCGGTTTGGAACATAACTCTAAATTGAATTTATCTT
TAAATAATAATAATAGTGCTGATAAGTCTCATGACCAACCCATTGAAAAT
AATCTTGACAGCGCTGTTCACACTCCACTGGAGTTTCCTACAATTACAAA
TGGTCCTAGACCTAAAAAAGCTGCTCCTAAAAAGAGATATACCCGCACCC
GATATTCTAATGAAGAACTACAAGTTGCCCTATCAAAATGTAGAGAAGGT
CTCAGCATTAGAGAGTGTTCAAAGAAATATGGTATCCCTAAAAGCACACT
GTGGGATAAATTGTCTTGTCGTACACCAGCAACTGTCCTTAGACCTGGTA
GATCATTCAAAGTTTCAGATGCAGTAGAGAACAGAAAACCTGCTAATTGC
AGGCTTGGTATGACGAAACTGTCGATACTGAAGTTCCTGTTTTAGTAGAG
AGTGTTGAATCTGTACAACCTAAACAACCAGAACCTACTACACCAAATCA
AATCAGGTCAGTCCTTGATCATATAGAGCAGACTATTGGTGAAGAGAAAT
TAAATTATTACAGACAATGGAAAGAAAATGGTGAACTTTCAAAGAAAGAT
CCTTTATACACTGCTTGGTACGCTCTTGCAATGGATCTAGATCGTATTCA
TAATTCCAATAAAAACAAAAGGAAAAGGAAATCGGAACAGCCGAGGGTTA
ATGGAAACTATGTACATCAACATCATCATTTAGAGAACTCAAAAGTGGAA
CATCATCCATTGGAAAATGATTTGATAGATCTGAACTCAACAACAACTAC
CGCTCCAAATGTTGAATTCACTGAAAATAAAGACAATAGAACTGTTGAAA
ATAACTTACCGCAGTCACATTATAATGGAGCATATGTGAGCAATGAAAGT
GAAAGTGTTCCACCAGATGATCAACTTTTGGCTAGTCAATTGGATTCTCA
AGATGAACGAGGATGGATTCAAAGTCCAAGAAAAGCAAATCATAGAAGCC
GTGAAATTGTTTCATGACAAATCAGAAGGTGTCAATGCAAATGATAATAG
TCACAGTAAACCTGGGAAGGCTTGGTATAAAAACTTCTTAAAACGTTACC
CAGCAGCACAACACAATCTGAGTGTCAATCATCAAAAAGCAGAATACTCA
ATTGAAATGATGGTAGATAAATATAATCACAATCTTGAATTTCTTGAATA
TAATGATGAAAGACACCATCAGCACAACAAAGACCCAGTTCTGGAACAGC
TTCCTGAGGAACTCAATATAAAATCAACAAGAAAAGATCATGGACTGTAT
CTCAACACATCTGAAAAAGAAGAACATTATCCATCTGAGAGGGAAAACCA
CGTTGAGTTTCATCCTAGAAGATACACTGAAGAAGATATCAGATATTCTG
AACATGATCTAGCTAACAAAAATCATCCCTATAGAAAGGAAAATTATGAG
GAACATATCTCTATATCAGCCTTTGTAGGTTTGCAAAAGGAAAGCTTGAC
AAAAGATAACCACGCAAAGATCTTTGAAGATGATCAGAGTAATAAAATTA
ACGGATACTCATTTAAAGATGAGCACTCAGCAAATTGTCTCTCCGGTTTG
GAACATAACTCTAAATTGAATTTATCTTTAAATAATAATAATAGTGCTGA
TAAGTCTCATGACCAACCCATTGAAAATAATCTTGACAGCGCTGTTCACA
CTCCACTGGAGTTTCCTACAATTACAAATGGTCCTAGACCTAAAAAAGCT
GCTCCTAAAAAGAGATATACCCGCACCCGATATTCTAATGAAGAACTACA
AGTTGCCCTATCAAAATGTAGAGAAGGTCTCAGCATTAGAGAGTGTTCAA
AGAAATATGGTATCCCTAAAAGCACACTGTGGGATAAATTGTCTTGTCGT
ACACCAGCAACTGTCCTTAGACCTGGTAGATCATTCAAAGTTTCAGATGC
AGTAGAGAACAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035590	XLOC_035590	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00056498-exon-scaffold_276-1575043694:346827..347706	TCONS_00056498-exon-scaffold_276-1575043694:346827..347706	Clytia hemisphaerica	exon
TCONS_00056498-exon-scaffold_276-1575043694:346078..346306	TCONS_00056498-exon-scaffold_276-1575043694:346078..346306	Clytia hemisphaerica	exon
TCONS_00056498-exon-scaffold_276-1575043694:345160..345693	TCONS_00056498-exon-scaffold_276-1575043694:345160..345693	Clytia hemisphaerica	exon
TCONS_00056498-exon-scaffold_276-1575043694:344732..344899	TCONS_00056498-exon-scaffold_276-1575043694:344732..344899	Clytia hemisphaerica	exon
TCONS_00056498-exon-scaffold_276-1510915933:346827..347706	TCONS_00056498-exon-scaffold_276-1510915933:346827..347706	Clytia hemisphaerica	exon
TCONS_00056498-exon-scaffold_276-1510915933:346078..346306	TCONS_00056498-exon-scaffold_276-1510915933:346078..346306	Clytia hemisphaerica	exon
TCONS_00056498-exon-scaffold_276-1510915933:345160..345693	TCONS_00056498-exon-scaffold_276-1510915933:345160..345693	Clytia hemisphaerica	exon
TCONS_00056498-exon-scaffold_276-1510915933:344732..344899	TCONS_00056498-exon-scaffold_276-1510915933:344732..344899	Clytia hemisphaerica	exon
TCONS_00056498-exon-scaffold_276-1491911889:346827..347706	TCONS_00056498-exon-scaffold_276-1491911889:346827..347706	Clytia hemisphaerica	exon
TCONS_00056498-exon-scaffold_276-1491911889:346078..346306	TCONS_00056498-exon-scaffold_276-1491911889:346078..346306	Clytia hemisphaerica	exon
TCONS_00056498-exon-scaffold_276-1491911889:345160..345693	TCONS_00056498-exon-scaffold_276-1491911889:345160..345693	Clytia hemisphaerica	exon
TCONS_00056498-exon-scaffold_276-1491911889:344732..344899	TCONS_00056498-exon-scaffold_276-1491911889:344732..344899	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00056498-protein	TCONS_00056498-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_276	supercontig	scaffold_276:344732..347706 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.92917	2.51073	0.944607	0.379723	6.13026	4.93686	3.78073	3.79456	2.42017	4.06395	2.68486	1.56817	2.5557	2.19234	2.2118	2.115	2.05293	3.58339	0.715077	1.97854	2.40905	1.96021	4.66447	4.53073	7.1418	6.83468	0.95931	0.890125	2.27428	2.58979

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR011991	WHTH_DNA-bd_dom
IPR006600	HTH_CenpB_DNA-bd_dom
IPR007889	HTH_Psq
IPR009057	Homeobox-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00056498 vs. Swiss-Prot (Human)

BLAST of TCONS_00056498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00056498 (transcript) - C. hemisphaerica