TCONS_00056509 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056509
Unique NameTCONS_00056509
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056509 ID=TCONS_00056509|Name=TCONS_00056509|organism=Clytia hemisphaerica|type=transcript|length=462bp
AGCTCAGGACTCGGCACAGTTGAGTTGGGAAAAGGACTTCAGAGATGAAA
GCAATTTGTTCAGTGACACACATACGGAAGCGAAGACTTTTGTTTTGGAA
AACGAACTTGAAGCATGTCAAATTCTATTAGAAGAGGAACCAGATAACAA
ATGtaagaaacaatttttttccttcGGTAACAATTGTCANGTTAGAAGAG
GAACCCGATAATAAATGGACAATGTTAACGATAGTGTATTTGATGAAAGC
CTTGGATGGTATCAAACACGCTGAAGCCATTGCTGGAATGATTGACAAGT
TGATGGAAACTGATCCAATGAGAAAAGGCTATTACCAACACCTGCGAAGT
AAATTCAACCTGGAAAACAAACTACAACACATTTATAACGAAAAGGTAAA
Cttctcgtccccgtgtatcccaggctttatttacgttacggatggacgcc
agagaatattat
Run BLAST on NCBI

transcript from alignment at scaffold_276:485863..489902-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056509 ID=TCONS_00056509|Name=TCONS_00056509|organism=Clytia hemisphaerica|type=transcript|length=4040bp|location=Sequence derived from alignment at scaffold_276:485863..489902- (Clytia hemisphaerica)
AGCTCAGGACTCGGCACAGTTGAGTTGGGAAAAGGACTTCAGAGATGAAA
GCAATTTGTTCAGGTTAGTTTTAATTTTTACACATTTTGAAAAGTCTTTT
TGGTTCCCACAATGACAACTCGTTTGTTATGTGTCGCTTTGAAGTGGAGT
TTTTGGTAACCAGCCAGTACCGGTCATTTCAATGTCACCAGTTACATTTC
TATAGTGGCGCGTGTCAGCACATAATAATTTAACGATACTTCAAATTATG
ATAGAGCTATGAAATTTTAGAAATGTGTTGAGCTTAGATTCTCCGCAAAA
AAGTTTCGATGACTTAAAAGATGACTTTTTGTTGTTACGACAGTCAATGA
CGTCATTTTATTTGTTGCCATTTTAACTACAGAAGTGTTTCTCTCTCTCA
AAGAAGTAATTCTACATTCCATTAAAACTGTCTGTGCAAAATTTACTGTG
CCAAACTATCGAAAGTATCGTTATGCTAATCCGCCCTACTTATTAACTCC
TGCCGTAAGCTCGTCTAATGTCGACATCGCTCTTCTAATTCCGACACCCA
GTTTTAGAGATAGGAATAATAGTAAGGTCAAAATCACTGATAGACAAAAG
ATTTTTTCCTCAATGGTCGCTAAGCAAAGAAATATAGTTTCCATCAGCGT
TTCTGACCTTCCTACTATTCCTATCTCTAAAGAAGGGTGTCTGGATTAGA
AGAGGGATGTCGACATTAGACCAAGTTAAAAGTACTTATTTGACTTTTTC
ATTTTTATGAAATGTAATGGGGATTCGACCAACCCATCAAGCTTGATCTT
CCCCCATTTTACTGGGTAGATCCATGATAAAGAAAGAGTAAATCTACAAC
CGTTGATAATGTGTATTTTTGCTTTCAGTGACACACATACGGAAGCGAAG
ACTTTTGTTTTGGAAAACGAACTTGAAGCATGTCAAATTCTATTAGAAGA
GGAACCAGATAACAAATGTAAGAAACAATTTTTTTCCTTCGGTAACAATT
GTCANGTTAGAAGAGGAACCCGATAATAAATGTAAGAAACAATTTTTTTC
CTTCGGTAACAATTTGTCACTCTTTACCGCAATTGCCATTGGGGAATCAT
ATAGCCTAGCGTGCACAATAACCATGGACTTTAATATATCCTGGCCACTG
TTTCTCGAATATATTTTTTTCTCGGGTATAGCTTCAATGTTTATAAAGGT
CAGTGTCAATAACTGCTTGTTATACAAATCTTTTGAGCAGCATACAACCT
TTATTAGAACACCAGTAGTAGTTTTGATTGAGATATTGTTGTGAAATGAC
TTATGGAGGGTTAATATTCTATTTTTCTCTGCGTAAGGGAGAGATGGGTA
TCAAATATTTGGGAAGCTTTTGAGTACGTACATATGAATGATCCCCAATC
ACATCTACCGTAAGTTGGTCTAATGTCGACATACGTCAGCTAATTCTGAC
ACCCTTCTTTAGAGATAGGAATATTAGGAAGATCGGCATTGCTGATTGAA
ATTATATTCTTTTCTTGGTCAGAGAAGAAGAAACCTTTTGCTGACCTTCT
TATTATTGCTATCTCTAAAAAGACGTTTGTCGAAATTAGATGAGGGATGT
CGACATTAGACTAACTTACGGCATCATTGCCTTGTTTTGGTTACTAGGGA
CAATGTTAACGATAGTGTATTTGATGAAAGCCTTGGATGGTATCAAACAC
GCTGAAGCCATTGCTGGAATGATTGACAAGTTGATGGAAACTGATCCAAT
GAGAAAAGGCTATTACCAACACCTGCGTGAGTTCTGCTGTTGTTTGATAT
ACAGTGAACTCTCGCTAATTCGAGATCGAACGAGTCTACTTTGTTCGAAT
TAGAGAAAGATTCGATTAATAGAAAAAAAAATGACGAGGGTTTTCCCTTG
ACGTGAAATGAGAATGAGTTCGAATTATAGAAAGATTCCTATAATAGAAG
TTCGAATTAGAGAAAGATTCCTTTAATAGAAGTTCGAATTAGAGAAAGAT
TCCTATAATAGAAGTTCGAATTAGAGAAAGATTCCTTTAATAGAAGTTCG
AATTAGAGAAAGATTCGATTAATAGAAAAAAAAATGATGAGGGTTTTCCC
TTGACGTGAAATGAGAATGAGTTCGAATTATAGAAAGATTCCTATAATAG
AAGTTCGAATTAGAGAAAGATTCCTTTAATAGAAGTTCGAATTAGAGAAA
GATTCGATTAATAGAAAAAAAAATGATGAGGGTTTTCCCTTGACGTGAAA
TGAGAATGAGTTCGAATTATAGAAAGATTCCTATAATAGAAGTTCGAATT
ATAGAAAGATTCCTTTAATAGAAGTTCGAATTAGAGAAAGATTCGATTAA
TAGAAAAAAAAAATGATGAGGGTTTTCCCTTGACGTGAAATGAGAATGAG
TTCGAATTATAGAAAGATTCCTATAATAGAAGTTCGAATTAGGGAAAGAT
TCGATTAATAGAAAAAAAAATGATGAGGGTTTTCCCTTGACGTGAAATGA
GAATGAGTTCGAATTATAGAAAGATTCCTATAATAGAAGTTCGAATTAGA
GAAAGATTCGATTAATAGAAAAAAAAAATGATGAGGGTTTTCCCTTGACG
TGAAATGAGAATGAGTTCGAATTATAGAAAGATTCCTATAATAGAAGTTC
GAATTAGGGAAAGATTCGATTAATAGAAAAAAAAATGATGAGGGTTTTCC
CTTGACGTGAAATGAGAATGAGTTCGAATTATAGAAAGATTCCTATAATA
GAAGTTCGAATTAGGGAAAGATTCGATTAATAGAAAAAAAAATGATGAGG
GTTTTCCCTTGACGTGAAATGAGAATGAGTTCGAATTATAGAAAGATTCC
TATAATAGAAGTTCGAATTATAGAAAGATTCCTTTAATAGAAGTTCGAAT
TAGAGAAAGATTTGATTAATAGAAAAAAAAATGATGAGGGTTTTCCCTTG
ACGTGAAATGAGAATGAGTTCGAATTATAGAAAGATTCCTATAATAGAAG
TTCGAATTTAGCGAGAGTCAACTTTATACGTTAGAAAAGGGCATTGCGCT
CGGTGATAAATTTACAGTAGAGTTTCTTTAATACACAAGTTGCAAAATTA
AAGACTGAAGTCAAATCGCGCTTTTACTCGAAATTTTTATGTGTCTGTTA
CATGACATTTATTTCTGATTGGTTCGACTTTATTGACACTAATTAATTAA
GTTATCAGCTGTAAGCTGTAAAACAACATGGGAATGAAGTCACGTGAACT
TTTCGAGTAATCACATGTTTTGACTGCACTGCTATAACTTTGCAACCCGT
GTATTCTCTTTTTAATGTCTCCCCAACTCGAACTAGTTTTCTTGTTCCTT
TTGTTGTTTTCTAAATTTCCTTAATTCGAACAAAATTGTGTGCGTGTTCG
AGTTATGGTAATAGTTTGAGTCAGCTGTAATAATGGGATTCACGCTTAGG
ATTGTTTGTGACATTTTTCACGAAAAGCAACCGCATATTTTTAGTTCGAA
AAGAGCTGAGAATTTTTGAAAGAGAGCCTGTGAATAAGAGCTTGTCAAAA
TTTGTTATTGCTTATTATTTTTAAGACTGATCTGTTACAGGCAGAACTGC
AAACTCCCAAAATGAGCTGGGAACCTATTAATTGACCGAAAAATCGAAGT
TGTGGAGTTTAGACACGCAAATGTCATGAAAACAAACATCTATAAAACGA
GCATAGCATATCTTAAAGTGACTTAAAGTCCATTCACTTTAAGTGTGCAC
TCTGCTTTGCTGTGGAAACCAAAAGTAGCAAAATAAGAGTGCACACTTAA
AAGGAGTGAACTTCGAATTTGAATTTCGTTATCCACCGCAAAAAATAGCT
GCCATATATGTTAGGTTTGATGAAGATTCAAAGAAAAACTATTTAGGGGT
TAATTTTTTCCCTTACTCTTTAGGAAGTAAATTCAACCTGGAAAACAAAC
TACAACACATTTATAACGAAAAGGTAAACTTCTCGTCCCCGTGTATCCCA
GGCTTTATTTACGTTACGGATGGACGCCAGAGAATATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035595XLOC_035595Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056509-exon-scaffold_276-1575043694:489840..489902TCONS_00056509-exon-scaffold_276-1575043694:489840..489902Clytia hemisphaericaexon
TCONS_00056509-exon-scaffold_276-1575043694:488872..489024TCONS_00056509-exon-scaffold_276-1575043694:488872..489024Clytia hemisphaericaexon
TCONS_00056509-exon-scaffold_276-1575043694:488127..488255TCONS_00056509-exon-scaffold_276-1575043694:488127..488255Clytia hemisphaericaexon
TCONS_00056509-exon-scaffold_276-1575043694:485863..485979TCONS_00056509-exon-scaffold_276-1575043694:485863..485979Clytia hemisphaericaexon
TCONS_00056509-exon-scaffold_276-1510915933:489840..489902TCONS_00056509-exon-scaffold_276-1510915933:489840..489902Clytia hemisphaericaexon
TCONS_00056509-exon-scaffold_276-1510915933:488872..489024TCONS_00056509-exon-scaffold_276-1510915933:488872..489024Clytia hemisphaericaexon
TCONS_00056509-exon-scaffold_276-1510915933:488127..488255TCONS_00056509-exon-scaffold_276-1510915933:488127..488255Clytia hemisphaericaexon
TCONS_00056509-exon-scaffold_276-1510915933:485863..485979TCONS_00056509-exon-scaffold_276-1510915933:485863..485979Clytia hemisphaericaexon
TCONS_00056509-exon-scaffold_276-1491911889:489840..489902TCONS_00056509-exon-scaffold_276-1491911889:489840..489902Clytia hemisphaericaexon
TCONS_00056509-exon-scaffold_276-1491911889:488872..489024TCONS_00056509-exon-scaffold_276-1491911889:488872..489024Clytia hemisphaericaexon
TCONS_00056509-exon-scaffold_276-1491911889:488127..488255TCONS_00056509-exon-scaffold_276-1491911889:488127..488255Clytia hemisphaericaexon
TCONS_00056509-exon-scaffold_276-1491911889:485863..485979TCONS_00056509-exon-scaffold_276-1491911889:485863..485979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:485863..489902 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.00879878	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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