TCONS_00056604 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056604
Unique NameTCONS_00056604
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length704

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056604 ID=TCONS_00056604|Name=TCONS_00056604|organism=Clytia hemisphaerica|type=transcript|length=704bp
GGATTACTGGACATCGATAGCTTACTACGAGCTAGACCAACACGTTGGCG
AAGTTTTCAAAGTTCCCAAGAGATTCAACTCCGTTATTGTAGATGGATAT
GTGGATGCTTCTGGCAAAGGCGGTAACCGGTTCTGTTTAGGACAATTGTC
AAATGTACACAGGACCGAACCCACAGAAAAAGCGCTACTTTATATAGGTA
AGACTGTTCCTtattaagaccatgttcagacgttacggttccgttccgaa
acggtttcgaaacaagtgtgaacgtcaaagttcgaaatgtcaaaaaagaa
gaagttACATAGCAAAACGGATCGAAACGGCTTCattccactattttcat
cggaacggaactgctccgttttcttgctcagaAACGTTCCAATACAAATA
TAAACTCTCTCGATCCGTAAAATAAACCATACCGGAGCAATGCGAAACCG
TAACGTTCTCTAagaaaagtcaaaattcaatttttgacttAGAAAAAGGG
GCCTAAAATCAGTATCAGCGCTGCTTTATATACATAAGACTTCGCTCAAT
AAAGATCTCAGAAAAGTCAATATTCACTTTGATTTCATTATGACTTAAAA
GTGGCCTAAAATCAGCATCTTCaagtcatttttgaaatctgtGGCTAGGa
ctgttttaattttttctaaggGTTTGGGCAGAATTGGACTCGTGGTTTTA
TTAA
Run BLAST on NCBI

transcript from alignment at scaffold_277:68801..69504-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056604 ID=TCONS_00056604|Name=TCONS_00056604|organism=Clytia hemisphaerica|type=transcript|length=704bp|location=Sequence derived from alignment at scaffold_277:68801..69504- (Clytia hemisphaerica)
GGATTACTGGACATCGATAGCTTACTACGAGCTAGACCAACACGTTGGCG
AAGTTTTCAAAGTTCCCAAGAGATTCAACTCCGTTATTGTAGATGGATAT
GTGGATGCTTCTGGCAAAGGCGGTAACCGGTTCTGTTTAGGACAATTGTC
AAATGTACACAGGACCGAACCCACAGAAAAAGCGCTACTTTATATAGGTA
AGACTGTTCCTTATTAAGACCATGTTCAGACGTTACGGTTCCGTTCCGAA
ACGGTTTCGAAACAAGTGTGAACGTCAAAGTTCGAAATGTCAAAAAAGAA
GAAGTTACATAGCAAAACGGATCGAAACGGCTTCATTCCACTATTTTCAT
CGGAACGGAACTGCTCCGTTTTCTTGCTCAGAAACGTTCCAATACAAATA
TAAACTCTCTCGATCCGTAAAATAAACCATACCGGAGCAATGCGAAACCG
TAACGTTCTCTAAGAAAAGTCAAAATTCAATTTTTGACTTAGAAAAAGGG
GCCTAAAATCAGTATCAGCGCTGCTTTATATACATAAGACTTCGCTCAAT
AAAGATCTCAGAAAAGTCAATATTCACTTTGATTTCATTATGACTTAAAA
GTGGCCTAAAATCAGCATCTTCAAGTCATTTTTGAAATCTGTGGCTAGGA
CTGTTTTAATTTTTTCTAAGGGTTTGGGCAGAATTGGACTCGTGGTTTTA
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035650XLOC_035650Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056604-exon-scaffold_277-1575043694:68801..69504TCONS_00056604-exon-scaffold_277-1575043694:68801..69504Clytia hemisphaericaexon
TCONS_00056604-exon-scaffold_277-1510915933:68801..69504TCONS_00056604-exon-scaffold_277-1510915933:68801..69504Clytia hemisphaericaexon
TCONS_00056604-exon-scaffold_277-1491911889:68801..69504TCONS_00056604-exon-scaffold_277-1491911889:68801..69504Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_277supercontigscaffold_277:68801..69504 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.477444	0.479911	0.775411	2.41417	0.323478	0.0763773	0.391498	0.174984	0.25441	0.336056	0.827142	0.435367	0.925475	0.862365	0.279093	0.237977	0.181793	0.282347	0.673157	0.327178	0.281503	0.935772	0.209759	0.0990753	0.11433	0.214094	0.133841	0	0.210787	0.101935
Blast
[Close]
BLAST of TCONS_00056604 vs. Swiss-Prot (Human)
Match: SMAD4 (Mothers against decapentaplegic homolog 4 OS=Homo sapiens GN=SMAD4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.339e-22
Identity = 46/69 (66.67%), Postives = 52/69 (75.36%), Query Frame = 2 
Query:    2 DYWTSIAYYELDQHVGEVFKVPKRFNSVIVDGYVDASGKGGNRFCLGQLSNVHRTEPTEKALLYIGKTV 208
            +YW SIAY+E+D  VGE FKVP     V VDGYVD S  GG+RFCLGQLSNVHRTE  E+A L+IGK V
Sbjct:  321 EYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPS--GGDRFCLGQLSNVHRTEAIERARLHIGKGV 387
The following BLAST results are available for this feature:
BLAST of TCONS_00056604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMAD47.339e-2266.67Mothers against decapentaplegic homolog 4 OS=Homo ... [more]
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