TCONS_00056667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056667
Unique NameTCONS_00056667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056667 ID=TCONS_00056667|Name=TCONS_00056667|organism=Clytia hemisphaerica|type=transcript|length=1414bp
NNAACAGAAGTGACTATCTTCTAAATCTATTATTTGGGTTGAAGGTCCAA
AggccaaagaaaaagaaaaggaaggaAAGGGCTCACTGAAATATTAATAA
GAGGGGAGACCGAACAACAAATTAGCAGTTCCTTATTTTGGGTAAAAATG
CTTCATCCTATTAGTTACATTGCCAAAAACAACTAAGTCTGGTTAAAATC
AAAAGGTTAACATTGAGGACTACCCATGAACCACTTGGCCACTTAATCCA
TGCCATCCCGTCTGTGAAAGGGGTTTTAAATGGACTCAGGGGTAACACCA
AAGTTGCTAAGAAGGTGGTGCCTCCACCTATTGAAGCTCTGGGCCCTTGT
AAAGCTGCCGATAAAGCTGGAAATCAGAATCTTCCCTCGGGCACTGAAAA
AAAAGGGGTGATTGTAACCAGGGGTGAGATGCAGATAACTTGCATTAAAG
CACAGGTTGCTGGGTAGTCGAATGGGGGTTCACTTGCAGGAGGGACAGTT
TGCAAAGATTAATCATGCAGACCATGACCATTGCCTCAAATAGGGAAATT
TCTGTTGGCTGGTAATTAAGGAGCATAAGGAGAATTATTGGAGAGGGGAA
TTTGTTCAAATCTGAAATAATTAGATTAGCTAAACgcccattttgaaaaa
aaagaaatgactaTAAGTAACAGGGTaactaaacaaataaaaaggAACCA
GCGAAATGAATTAAAATCATTAAATAAGTTTGGGGAGAAACCAACACGCC
TAAAACCCTCAAATTTTAGCCTGACAGGTGGAAAACTAAGTGTTACAGAA
TGACCAGTAGTTGTCTGCAACCAGCTGCTACCCGCAGCACTGatgattga
aattgaatatcatcAGTATATACAAAGATGCAGCAACtcgacaaaagttg
tataattgGCAAAATACAGTGGAACACCATCAAAGACCTGACGAGAGCGA
CAGACCAGGAAGAAAGGTGTGTACGTATTTATTTGAACAGAGAGTAAAGA
GGAAGTTCAGGAAGGTGGAATTAGAGGCAAacctaaaagaaaaagacata
AGATCAACTACAGAGGAACCCTTGATTGAAGCAGCATGATGATTCGACTT
GGGAGAGTCAAATTGAATAAGGTAGCTGAAGCTGAGACTAAAAAACAAGA
GAAGGTCTAGTAAACACGTCACCAGAGCCGAGAACATGTAGCAAGCAAAG
GAAAGGTAAGAACGAAAGGTAAGAGAGAAAGAAGAGTAGCCAAATGAGAG
CCTTAGGAAAATTGACACAAAACTGTTTTGTAGTGGATTATCTGTGCACG
TTGACTCGAGGAAGCTTTAAGAGAAGCGTGAACAGCAAAAGCTTTGAATA
CTGGATTGTGAGTAAGATCAGCTTAGTCAAAGGACCTACCGGAGATGGGC
CCATTGACCTTCTA
Run BLAST on NCBI

transcript from alignment at scaffold_280:10529..11942

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056667 ID=TCONS_00056667|Name=TCONS_00056667|organism=Clytia hemisphaerica|type=transcript|length=1414bp|location=Sequence derived from alignment at scaffold_280:10529..11942 (Clytia hemisphaerica)
TAGAAGGTCAATGGGCCCATCTCCGGTAGGTCCTTTGACTAAGCTGATCT TACTCACAATCCAGTATTCAAAGCTTTTGCTGTTCACGCTTCTCTTAAAG CTTCCTCGAGTCAACGTGCACAGATAATCCACTACAAAACAGTTTTGTGT CAATTTTCCTAAGGCTCTCATTTGGCTACTCTTCTTTCTCTCTTACCTTT CGTTCTTACCTTTCCTTTGCTTGCTACATGTTCTCGGCTCTGGTGACGTG TTTACTAGACCTTCTCTTGTTTTTTAGTCTCAGCTTCAGCTACCTTATTC AATTTGACTCTCCCAAGTCGAATCATCATGCTGCTTCAATCAAGGGTTCC TCTGTAGTTGATCTtatgtctttttcttttaggtTTGCCTCTAATTCCAC CTTCCTGAACTTCCTCTTTACTCTCTGTTCAAATAAATACGTACACACCT TTCTTCCTGGTCTGTCGCTCTCGTCAGGTCTTTGATGGTGTTCCACTGTA TTTTGCcaattatacaacttttgtcgaGTTGCTGCATCTTTGTATATACT gatgatattcaatttcaatcatCAGTGCTGCGGGTAGCAGCTGGTTGCAG ACAACTACTGGTCATTCTGTAACACTTAGTTTTCCACCTGTCAGGCTAAA ATTTGAGGGTTTTAGGCGTGTTGGTTTCTCCCCAAACTTATTTAATGATT TTAATTCATTTCGCTGGTTcctttttatttgtttagttACCCTGTTACTT AtagtcatttcttttttttcaaaatgggcGTTTAGCTAATCTAATTATTT CAGATTTGAACAAATTCCCCTCTCCAATAATTCTCCTTATGCTCCTTAAT TACCAGCCAACAGAAATTTCCCTATTTGAGGCAATGGTCATGGTCTGCAT GATTAATCTTTGCAAACTGTCCCTCCTGCAAGTGAACCCCCATTCGACTA CCCAGCAACCTGTGCTTTAATGCAAGTTATCTGCATCTCACCCCTGGTTA CAATCACCCCTTTTTTTTCAGTGCCCGAGGGAAGATTCTGATTTCCAGCT TTATCGGCAGCTTTACAAGGGCCCAGAGCTTCAATAGGTGGAGGCACCAC CTTCTTAGCAACTTTGGTGTTACCCCTGAGTCCATTTAAAACCCCTTTCA CAGACGGGATGGCATGGATTAAGTGGCCAAGTGGTTCATGGGTAGTCCTC AATGTTAACCTTTTGATTTTAACCAGACTTAGTTGTTTTTGGCAATGTAA CTAATAGGATGAAGCATTTTTACCCAAAATAAGGAACTGCTAATTTGTTG TTCGGTCTCCCCTCTTATTAATATTTCAGTGAGCCCTTtccttccttttc tttttctttggccTTTGGACCTTCAACCCAAATAATAGATTTAGAAGATA GTCACTTCTGTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035691XLOC_035691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056667-exon-scaffold_280-1491911889:10529..11942TCONS_00056667-exon-scaffold_280-1491911889:10529..11942Clytia hemisphaericaexon
TCONS_00056667-exon-scaffold_280-1510915933:10529..11942TCONS_00056667-exon-scaffold_280-1510915933:10529..11942Clytia hemisphaericaexon
TCONS_00056667-exon-scaffold_280-1575043694:10529..11942TCONS_00056667-exon-scaffold_280-1575043694:10529..11942Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_280supercontigscaffold_280:10529..11942 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (1.64805 tpm) - - (11.9836 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.38999 2.18556 1.78947 1.79376 2.32531 2.25466 4.33832 3.89759 11.8556 9.64001 7.17549 6.75202 3.92719 5.0417 5.96808 5.32594 6.46547 4.71275 1.98486 2.23614 7.6131 11.9836 1.7352 1.64805 3.8607 4.37226 3.44965 3.09174 2.46406 2.44725
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
200400600800100012001400Sequence
Match NameE-valueIdentityDescription
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