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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056790 ID=TCONS_00056790|Name=TCONS_00056790|organism=Clytia hemisphaerica|type=transcript|length=708bp
CACAAACTTGGAAACAAAATTATTATGTTCTGTTCATTTATTTCATTAAT
TTAAAAGCAATGTTTAAGGTTTCGTCTTGCTTTGGCAGCAGCCCTTCTTG
TTGATCTTGATCGTCTAGATGGTGAAGCCTTTCGTTTTGGTGAAGATTTG
CGCTTTGGCGAAGATCTGCGCTTTGGCGAAACAGATCGTCGAGCGGGACT
TCTTCTTCGTTTTGGTGAAGCTGAACGGCGTGGGCTGGTTCTGCGTCTTG
GTGAAGCGGAACGGCGTGGGCTTGCCTTTCTTTTTGGGCTAGCTCTTCGT
CTTGGTGAAGCAGATCGTCTTGGACTAGCCTTGCGTCTTGGCGAAACGGA
TCGGCGAGATGGACTTCTTCTTCGCTTTGGTGATACTGAGCGTCGAGGGC
TAACTTTGCGTCTTGGCGAAACGGATCGTCGAGCTGGGCTAGTTCTTCGT
TTAGGTGACACAGATCGTCTGGATGGACTTCTTCTTCGTTTTGGTGAGGC
TGCTCTTCGAGGACTTGCTTTACGTTTTGGTGAAGCAGCACGTCTTGATG
GGCTCGCTTTTCTTTTTGGTGAAGCGGCACGTTTTGGTCTTCTTGTCATA
ACCATGTTGTTGATTGTTAATGAGTGAATTAAgtaaaaatttggtgttga
tgtGATGTGGTTGTGTTGTAGCAAAGACGTGACCTTCCTCTCCGAGAGAT
GCCTGTGA Run BLAST on NCBI protein sequence of TCONS_00056790-protein >TCONS_00056790-protein ID=TCONS_00056790-protein|Name=TCONS_00056790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
HRHLSERKVTSLLQHNHITSTPNFYLIHSLTINNMVMTRRPKRAASPKRK
ASPSRRAASPKRKASPRRAASPKRRRSPSRRSVSPKRRTSPARRSVSPRR
KVSPRRSVSPKRRRSPSRRSVSPRRKASPRRSASPRRRASPKRKASPRRS
ASPRRRTSPRRSASPKRRRSPARRSVSPKRRSSPKRKSSPKRKASPSRRS
RSTRRAAAKARRNLKHCF Run BLAST on NCBI transcript from alignment at scaffold_282:90320..91027 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056790 ID=TCONS_00056790|Name=TCONS_00056790|organism=Clytia hemisphaerica|type=transcript|length=708bp|location=Sequence derived from alignment at scaffold_282:90320..91027 (Clytia hemisphaerica)
TCACAGGCATCTCTCGGAGAGGAAGGTCACGTCTTTGCTACAACACAACC
ACATCacatcaacaccaaatttttacTTAATTCACTCATTAACAATCAAC
AACATGGTTATGACAAGAAGACCAAAACGTGCCGCTTCACCAAAAAGAAA
AGCGAGCCCATCAAGACGTGCTGCTTCACCAAAACGTAAAGCAAGTCCTC
GAAGAGCAGCCTCACCAAAACGAAGAAGAAGTCCATCCAGACGATCTGTG
TCACCTAAACGAAGAACTAGCCCAGCTCGACGATCCGTTTCGCCAAGACG
CAAAGTTAGCCCTCGACGCTCAGTATCACCAAAGCGAAGAAGAAGTCCAT
CTCGCCGATCCGTTTCGCCAAGACGCAAGGCTAGTCCAAGACGATCTGCT
TCACCAAGACGAAGAGCTAGCCCAAAAAGAAAGGCAAGCCCACGCCGTTC
CGCTTCACCAAGACGCAGAACCAGCCCACGCCGTTCAGCTTCACCAAAAC
GAAGAAGAAGTCCCGCTCGACGATCTGTTTCGCCAAAGCGCAGATCTTCG
CCAAAGCGCAAATCTTCACCAAAACGAAAGGCTTCACCATCTAGACGATC
AAGATCAACAAGAAGGGCTGCTGCCAAAGCAAGACGAAACCTTAAACATT
GCTTTTAAATTAATGAAATAAATGAACAGAACATAATAATTTTGTTTCCA
AGTTTGTG Coding sequence (CDS) from alignment at scaffold_282:90320..91027 >TCONS_00056790 ID=TCONS_00056790|Name=TCONS_00056790|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_282:90320..91027 (Clytia hemisphaerica)
CACAGGCATCTCTCGGAGAGGAAGGTCACGTCTTTGCTACAACACAACCA
CATCacatcaacaccaaatttttacTTAATTCACTCATTAACAATCAACA
ACATGGTTATGACAAGAAGACCAAAACGTGCCGCTTCACCAAAAAGAAAA
GCGAGCCCATCAAGACGTGCTGCTTCACCAAAACGTAAAGCAAGTCCTCG
AAGAGCAGCCTCACCAAAACGAAGAAGAAGTCCATCCAGACGATCTGTGT
CACCTAAACGAAGAACTAGCCCAGCTCGACGATCCGTTTCGCCAAGACGC
AAAGTTAGCCCTCGACGCTCAGTATCACCAAAGCGAAGAAGAAGTCCATC
TCGCCGATCCGTTTCGCCAAGACGCAAGGCTAGTCCAAGACGATCTGCTT
CACCAAGACGAAGAGCTAGCCCAAAAAGAAAGGCAAGCCCACGCCGTTCC
GCTTCACCAAGACGCAGAACCAGCCCACGCCGTTCAGCTTCACCAAAACG
AAGAAGAAGTCCCGCTCGACGATCTGTTTCGCCAAAGCGCAGATCTTCGC
CAAAGCGCAAATCTTCACCAAAACGAAAGGCTTCACCATCTAGACGATCA
AGATCAACAAGAAGGGCTGCTGCCAAAGCAAGACGAAACCTTAAACATTG
CTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056790-exon-scaffold_282-1491911889:90320..91027 | TCONS_00056790-exon-scaffold_282-1491911889:90320..91027 | Clytia hemisphaerica | exon |
| TCONS_00056790-exon-scaffold_282-1510915933:90320..91027 | TCONS_00056790-exon-scaffold_282-1510915933:90320..91027 | Clytia hemisphaerica | exon |
| TCONS_00056790-exon-scaffold_282-1575043694:90320..91027 | TCONS_00056790-exon-scaffold_282-1575043694:90320..91027 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_282 | supercontig | scaffold_282:90320..91027 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005819 | Histone_H5 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006334 | nucleosome assembly |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0000786 | nucleosome |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006334 |
nucleosome assembly |
| cellular_component |
GO:0000786 |
nucleosome |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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