TCONS_00056973 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056973
Unique NameTCONS_00056973
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1675

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056973 ID=TCONS_00056973|Name=TCONS_00056973|organism=Clytia hemisphaerica|type=transcript|length=1675bp
TGTTTTTTGTGGAGCTAGCTTTTGGGTTTAGCTCAAATGAAAGAAGATGA
AGATAGATAAACatgtgaaatatttcataagATGCTTGAATGCACTTCCT
GGAGCTTATACATCAATAGACACTAGCAGGATGACAATCTTGTTTTTTGC
ATTGTCTGGTTTGGATCTCTTGAATGCCTTggataaaattgaaaatgata
agAATAAGATTATTGATTGGATTTACTCACTGCAAATACTCCCTGGTGAA
AATACAGCTGATAAAGATACAAAGAAGTGTGGTTTTCGGGGGTCATCATT
CCTTGGTGGTGAATTCAATCCAGATGGTTGTTTTACAACATCAGAAATTT
ATGAAGGCTCCCATATAGCGATGACTTACACAGCACTTTTATCACTGCTT
ATATTGGGCGATGATTTATCTCGTGTCAACAAGAAAGCTATCACTGAAAA
CCTAAAGTCACTACAACTCAAGAATGGGAGtttctacTCAACACCTGAAG
GAAGTGAGAACGACATGAGATTTTTATATTGCGCTTGCTGTATATCCTAC
ATCATTGATAACTGGAGTGGTGTAAACAAGAAATTAGCTGTGAAATATGT
TCAAAAAAGCATGGGTTATGATCATGGCATTTCTCAAGGACCACAGCTAG
AATCTCATGGTGGCTCTACCTTTTGTGCTGTAGCATCATTACATCTCATG
GGAGAATTAGAAAATTGCTTTGACTGTAAGAAATTGGAGAAACTGAAGAG
GTGGTGCTTAGTACGACAGAAAAGTGGATTTCAAGGCCGCCCTAATAAAC
CTGTTGATACTTGTTATTCATTCTGGGTTGGAGCATCTCTAAAGCTTTTG
GATTGCTTTCAATTTGTAGATATAGAAAAGAATCGAGAGTTTTTGTTAAC
AACGCAACACAATATTACTGGCGGTTTCAGTAAATGGCCAAATTATCACT
CTGATGCACTGCATACCTATTTTGGAATTTGTGGCATGTCGCTTATGAAT
TTGTACAACCTCCAGCCATTATCTCCTGCATTGAACATCAGCGAACGAGC
ACACCAACATCTCAAGACTCTTCATAATACAAACACAATGGATATTTCTT
GAAATACCCATTCTTCACTagcttttatcaaaattttgtaaaattatttC
TAGCATACTATGTAGCTTCTTTATTAGCTTATTATTATGTATTTTCAGTT
AAGTCGACTGCTTTTAACCCTTCTGTGCCTTATTAATGAGCACTTTCTGC
TTATTAGCCAATTTCAGCATATGCTAATATGAGAGATTTGAAATTTCGAT
CTTGAACTAAGTTTTTTATGATGGAAAAACCTGAAGAGTGGAAAATGGGA
AATACATTTCCAAACTCAAGGGGACACATATCACTTACATTTCTGATAat
tttcagaacattttaaacttAAAGGATGGTATGCACCGCAGTCGCTAATG
TCGGCATAATATGCTCATATCTGGTAAATGGGGTTCAACTTAATTTCTCC
CTTCGGGAAATGggcaaaaccttaaaaaaacgCAGACAGTTAAAAAGTCA
ATTGAAATTTGGGAATCTATcacaaaacattttaatttaatCCTTTTATT
ACGAAAATGATAGATTAGGTACCAAACCCCCTATATTGTAATTACCCCGT
TAATCAAACAATCTCTTAAAATATG
Run BLAST on NCBI

protein sequence of TCONS_00056973-protein

>TCONS_00056973-protein ID=TCONS_00056973-protein|Name=TCONS_00056973-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MKIDKHVKYFIRCLNALPGAYTSIDTSRMTILFFALSGLDLLNALDKIEN
DKNKIIDWIYSLQILPGENTADKDTKKCGFRGSSFLGGEFNPDGCFTTSE
IYEGSHIAMTYTALLSLLILGDDLSRVNKKAITENLKSLQLKNGSFYSTP
EGSENDMRFLYCACCISYIIDNWSGVNKKLAVKYVQKSMGYDHGISQGPQ
LESHGGSTFCAVASLHLMGELENCFDCKKLEKLKRWCLVRQKSGFQGRPN
KPVDTCYSFWVGASLKLLDCFQFVDIEKNREFLLTTQHNITGGFSKWPNY
HSDALHTYFGICGMSLMNLYNLQPLSPALNISERAHQHLKTLHNTNTMDI
S
Run BLAST on NCBI

transcript from alignment at scaffold_284:1315323..1320812-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056973 ID=TCONS_00056973|Name=TCONS_00056973|organism=Clytia hemisphaerica|type=transcript|length=5490bp|location=Sequence derived from alignment at scaffold_284:1315323..1320812- (Clytia hemisphaerica)
TGTTTTTTGTGGAGCTAGCTTTTGGGGTTGGCAAAAGAATTCTTTTAATT
TCAATTTTTTGTAAAAAATGCATTTTAGAAAATTGATTTCCCTAATTGTT
TATGCTATCAATGTACAATTCTATAGTAATCTTTTATCTAATACTTTTAC
CTTGCAATCTTTTACTTCTACAAGCAGAGTAACAAGAACCTATTTTTTCA
TTTGTGTTAGTTTAGCTCAAATGAAAGAAGATGAAGATAGATAAACATGT
GAAATATTTCATAAGATGCTTGAATGCACTTCCTGGAGCTTATACATCAA
TAGACACTAGCAGGTAAACGATTTACACTTGTAAAAGCTTTACATTTTTA
CAGTTTCCTTATTCTAGTCCAGCCTACAGCAAATCACTATAAAAGATGAG
AGAGGGAAATGAAATATAGATTTTTTCATATGGCATGTGGTCTTTATTTT
AACTTTGATTAATATTTTTATTGTTTTTTGGTATCTATCTATTTATTAAG
TGGCATAAGGCGTGAGCCCATAATCGCGACATATAAAATAAATATTATTG
TCATTATCTACAAGTTTAATTAAAATTAGGTAGTTTCTGGAAAATTACTT
TAGAATAAAAAAAATATTTTTATCATTTAGGATGACAATCTTGTTTTTTG
CATTGTCTGGTTTGGATCTCTTGAATGCCTTGGATAAAATTGAAAATGAT
AAGAATAAGATTATTGATTGGATTTACTCACTGCAAATACTCCCTGGTGA
AAATACAGGTAACTTTTGAAGTATATTTTTAATAATACTAATCAACCCTG
ATGATGGAGTAACATGCAACTAAATTCAAAGCGTACCCCAATTTGGTTTG
TGTATGAATTGTGTTTTTTAGGAGAAATGCTTCTTATTTTTTGTTCAAAG
TTTGAAGGTTTTTGTTTCCAGCTTTCATAAGGATGGGAACCCCTTTCTAG
TACTTTATAGAAATGTTAACTATTTGAAATGCGATAAAGCATGGAGTTTG
TTTTTCTTTTATATTTAGCTGATAAAGATACAAAGAAGTGTGGTTTTCGG
GGGTCATCATTCCTTGGTGGTGAATTCAATCCAGATGTAATTCTTCTTTG
ATTATTTTTAATTTTCTTATTCTCAGAAATGTCTATTATTGTCAATTTGA
AGCCACTGTATGTGAGGGCAAAAATTGATCTATAAAGTGAACCCTGCAAA
TGTGCAGGGAAAATTTGGCAATATTTGTCCATTCTTTTTCCATTTTGAAG
CTACATATTTGTACCTTAGCAAAATTCTTTGATAAAAAGTTCGTTTCGGA
AACCTGAAATGGCTAGACTTACAACAGATCACCTTGAATTACCCTATTTT
TTGCTTGTATATGAAATCACAGAGTCTCAAAGTCTATACACTATAATTTT
TCTTAAATTTGAAACTAGATTTTACTTTTAGGGTTGTTTTACAACATCAG
AAATTTATGAAGGCTCCCATATAGCGATGACTTACACAGCACTTTTATCA
CTGCTTATATTGGGCGATGATTTATCTCGTGTCAACAAGAAAGCTATCAC
TGAAAACCTAAAGTCACTACAACTCAAGAATGGGAGGTTTGCTTTACTAT
TATCTTTAGTGAGCCAGGTCTTGAGGGTTAAATAAAATTGTATCTAAAGA
TAATTTGAATGATTTAAATAATTTTAATTCACAATTTCGAAGTTTAAAAA
AATACATTACTTCAAGTTGCATGCTTTGGATATGGATATATGGATACAGA
TTGCCGTAAGGCATGAAACTTGAAGTACTTTTTTTAACTTCAAAATTTTG
AAGTAAATTTGTTGGTTTGCTTTACACAGTTTATCACGAGCACTCTTTTA
AATGATGTTTAACAATATATATCAATAATGATATAGAGCGAGCTATACCA
ATTGGCATTTTCCCTCCTACCTGGGTAATGACTATGCAGAACATCCAGCA
ACCCTCTAATATAGTGGTATATCTTGGTTTCATATTCATACTTATCCCAG
GCAATTTTTCTGTGTTTAAACAAGGACTTTAGGGTGCACGACAATACAAT
GATTGGTATAAAATCGAACATGCTCCTGCTTGATGGTATTTTTGAGGCCA
TTGTTACTTTTTTTTTTCAATTCATTTTTCAGTTTCTACTCAACACCTGA
AGGAAGTGAGAACGACATGAGATTTTTATATTGCGCTTGCTGTATATCCT
ACATCATTGATAACTGGAGTGGTGTAAACAAGAAATTAGCTGTGAAATAT
GTTCAAAAAAGCATGGTATATAAAGTCTGTTCCAAAGAAATTGACAGTTT
GTTCTTTTTCAAACATTCCTCTTGAGGGGGGGTCTAGCTGAAAGTAATAC
TTCGTTGGAAAGATAATTTTGACCGGCTTGGAAGCAATTTGAAGATGAAA
TTGAAAAATTAAGAAGAAGAAAATGAAGACTTTCGCTACAGGACTAAAAA
CTTTTTTTTATATTTTTCTGAAGTTTTGAAATTTTAGAAGGTTCAAGTGG
GCGATAAATTGCTTAAGAATGCTCAAAATGAGCTTATCACAAAGGGCTAT
AAACTCTTAACACAAAATACATTTTAGAAATCTGAATACATTTTAGAAAT
CAGCGTGCTTCCAACGGTATTACTTTTAATTATAACATTTTTTCCTAAAG
TGCAATGTTTAAAAAAGGACAGTCTGCCAATTCTTCTGGAGTAGACTTTA
GTTTGAAAATAATCTATTGCAATAGTCTTTAGTATGTTTTGATTCTTTTT
TGAACAGCCAACCTCCAACTCCAGTCTTTGTAAATATTCTATTAGCTCCT
TATTCATAACTATTTCACGGTTGGGTACATAACCATGACATAACAAACAT
TAAACACTATACATTTTTAAGGCTACTATGTTATAAATTTGTTCAATCTT
AGGGTTATGATCATGGCATTTCTCAAGGACCACAGCTAGAATCTCATGGT
AGGTGAATCTCTTGTATAACTAATAAAGTTAAGTGCAAAAACTTTTCTAA
CCAAAACCTGCCACTCAAACCAAAGAAAATAGCCATGAAATTTATGAGAC
TCAACACAAAATATTAAAAAAAAATCTCAAATGAAGAAGTAACAGAAAGT
TACTCATTAAAAAGCAAAGCAAGCAGAAAGTAGAATATGAATTTTCGCTT
GGATGATAAGAACCAAATCTAGTATCAGGTGTGGTTTAGAGTAATCCTAA
GCATAACGATTGGTTTAATAAGATCAGTAGTCTTATTCCTGTAATTCCCC
TACCCATTTTCATATACTCTCAATATTATGTTGTCTGTAAAAAAAGTCAA
ATTGGAAGAGTTTCTCTTCTAAAATATGAATATCCTTTTATCAGACATGT
AGGTTTCTGTCTCATCTATATCAGGAATATCAAAATTTTGCATTTTTTTA
TATTTCAACATTTCCAGGTGGCTCTACCTTTTGTGCTGTAGCATCATTAC
ATCTCATGGGAGAATTAGAAAATTGCTTTGACTGTAAGAAATTGGAGAAA
CTGAAGAGGTGGTGCTTAGTACGACAGAAAAGTGGATTTCAAGGCCGCCC
TAATAAACCTGTTGATACTTGTTATTCATTCTGGGTTGGAGCATCTCTAA
AGGTGACGTTTCTTAAATTTGAGATTCTCAAGCGACCGAAGTGCAAAGGT
ACAGGGTGCGGCAAAAAAATATATAGTTTTGTCAAGATATTATTAGCTGA
CGGTTTAAAGATTTTTCGTTGATTCTTTTTATTTATGCTATAGAGAACTT
TAAGATCGGTTCAGTCAATCAAAAGTAATGTTGAAAAAACATTGATTGAC
TAAACTGATTTTAAAGCTTCAATTCACCAAAGTTTAAGTAAAGCTACCCT
CTAAGCTTTTTTCACATACACATAAAATCTAACATAAGACCTTTTGGAAA
ATCATTCGTAAGGCTGTCTTTTGGGAATTTCCCTGACATTATGTAGAGTT
TTTGTTGATTAAGAAACTTTTTGAACGTAAGCAAACTCTACATGAGGCCT
TAAAACACTACGTAAGCTTAGGGAAATTCCCCACCCTTCAAGGTCTTAAG
TAAAATTTTACGTACATGTGAAAAAAGCTCTATAGAATAAAAAAAGAATC
AACAAAAACTCTTTTACCGTAAGCTCACAATATCTTGACAAACCTGTATA
CTTTTTTGGTGCACTGGTAGAGCATTTTTTGTGCGCAAGGTTGTAGGCTT
AGTCCGCGGACCGGGTTATACTAAAAGGGAAAAGAGTGGCCCCTCCCTTA
ACCTACGGGTAGATGGCTATCGAAAAAGGAGCCCTTTGGGTTGCCTCCGA
CCGCAGTCGCAGACTTCTTTCTTAAGATTCTCAGATACCTTATTATTATG
TTTGGTCATTAAAGTGGAATCTAGTCTCAAGTTTTCAAAGAAATGGAGCT
AAAACTCTGACTCTCAGTTCGTTTGAAAAAGTTAAACTTTTGTAACTGAA
GATAACGAGTATCATTCAATTTCGATAACCTCTTTCCATTTTAGCTTTTG
GATTGCTTTCAATTTGTAGATATAGAAAAGAATCGAGAGTTTTTGTTAAC
AACGCAACACAATATTACTGGCGGTTTCAGTAAATGGCCAAATTATCACT
CTGGTAAGAATGTTTACAACAACTTTCTCCTTCTTCCGCGCTGATTGAGC
ATACAAATGTTGAGAAAGTGTTTTGTCTATACTCTACTTTGTCAGCAGAA
AGGCGCGCCATCTTTCTATATCATAACGAAGAATATCCTTAAATAGCCTG
CTCTCCTTGTTTCAATAGATGCACTGCATACCTATTTTGGAATTTGTGGC
ATGTCGCTTATGAATTTGTACAACCTCCAGCCATTATCTCCTGCATTGAA
CATCAGCGAACGAGCACACCAACATCTCAAGACTCTTCATAATACAAACA
CAATGGATATTTCTTGAAATACCCATTCTTCACTAGCTTTTATCAAAATT
TTGTAAAATTATTTCTAGCATACTATGTAGCTTCTTTATTAGCTTATTAT
TATGTATTTTCAGTTAAGTCGACTGCTTTTAACCCTTCTGTGCCTTATTA
ATGAGCACTTTCTGCTTATTAGCCAATTTCAGCATATGCTAATATGAGAG
ATTTGAAATTTCGATCTTGAACTAAGTTTTTTATGATGGAAAAACCTGAA
GAGTGGAAAATGGGAAATACATTTCCAAACTCAAGGGGACACATATCACT
TACATTTCTGATAATTTTCAGAACATTTTAAACTTAAAGGATGGTATGCA
CCGCAGTCGCTAATGTCGGCATAATATGCTCATATCTGGTAAATGGGGTT
CAACTTAATTTCTCCCTTCGGGAAATGGGCAAAACCTTAAAAAAACGCAG
ACAGTTAAAAAGTCAATTGAAATTTGGGAATCTATCACAAAACATTTTAA
TTTAATCCTTTTATTACGAAAATGATAGATTAGGTACCAAACCCCCTATA
TTGTAATTACCCCGTTAATCAAACAATCTCTTAAAATATG

Coding sequence (CDS) from alignment at scaffold_284:1315323..1320812-

>TCONS_00056973 ID=TCONS_00056973|Name=TCONS_00056973|organism=Clytia hemisphaerica|type=CDS|length=9504bp|location=Sequence derived from alignment at scaffold_284:1315323..1320812- (Clytia hemisphaerica)
ATGCACTGCATACCTATTTTGGAATTTGTGGCATGTCGCTTATGAATTTG
TACAACCTCCAGCCATTATCTCCTGCATTGAACATCAGCGAACGAGCACA
CCAACATCTCAAGACTCTTCATAATACAAACACAATGGATATTTCTTGAC
TTTTGGATTGCTTTCAATTTGTAGATATAGAAAAGAATCGAGAGTTTTTG
TTAACAACGCAACACAATATTACTGGCGGTTTCAGTAAATGGCCAAATTA
TCACTCTGGTGGCTCTACCTTTTGTGCTGTAGCATCATTACATCTCATGG
GAGAATTAGAAAATTGCTTTGACTGTAAGAAATTGGAGAAACTGAAGAGG
TGGTGCTTAGTACGACAGAAAAGTGGATTTCAAGGCCGCCCTAATAAACC
TGTTGATACTTGTTATTCATTCTGGGTTGGAGCATCTCTAAAGGGTTATG
ATCATGGCATTTCTCAAGGACCACAGCTAGAATCTCATGTTTCTACTCAA
CACCTGAAGGAAGTGAGAACGACATGAGATTTTTATATTGCGCTTGCTGT
ATATCCTACATCATTGATAACTGGAGTGGTGTAAACAAGAAATTAGCTGT
GAAATATGTTCAAAAAAGCATGGGTTGTTTTACAACATCAGAAATTTATG
AAGGCTCCCATATAGCGATGACTTACACAGCACTTTTATCACTGCTTATA
TTGGGCGATGATTTATCTCGTGTCAACAAGAAAGCTATCACTGAAAACCT
AAAGTCACTACAACTCAAGAATGGGAGCTGATAAAGATACAAAGAAGTGT
GGTTTTCGGGGGTCATCATTCCTTGGTGGTGAATTCAATCCAGATGATGA
CAATCTTGTTTTTTGCATTGTCTGGTTTGGATCTCTTGAATGCCTTGGAT
AAAATTGAAAATGATAAGAATAAGATTATTGATTGGATTTACTCACTGCA
AATACTCCCTGGTGAAAATACAGATGAAGATAGATAAACATGTGAAATAT
TTCATAAGATGCTTGAATGCACTTCCTGGAGCTTATACATCAATAGACAC
TAGCAGATGCACTGCATACCTATTTTGGAATTTGTGGCATGTCGCTTATG
AATTTGTACAACCTCCAGCCATTATCTCCTGCATTGAACATCAGCGAACG
AGCACACCAACATCTCAAGACTCTTCATAATACAAACACAATGGATATTT
CTTGACTTTTGGATTGCTTTCAATTTGTAGATATAGAAAAGAATCGAGAG
TTTTTGTTAACAACGCAACACAATATTACTGGCGGTTTCAGTAAATGGCC
AAATTATCACTCTGGTGGCTCTACCTTTTGTGCTGTAGCATCATTACATC
TCATGGGAGAATTAGAAAATTGCTTTGACTGTAAGAAATTGGAGAAACTG
AAGAGGTGGTGCTTAGTACGACAGAAAAGTGGATTTCAAGGCCGCCCTAA
TAAACCTGTTGATACTTGTTATTCATTCTGGGTTGGAGCATCTCTAAAGG
GTTATGATCATGGCATTTCTCAAGGACCACAGCTAGAATCTCATGTTTCT
ACTCAACACCTGAAGGAAGTGAGAACGACATGAGATTTTTATATTGCGCT
TGCTGTATATCCTACATCATTGATAACTGGAGTGGTGTAAACAAGAAATT
AGCTGTGAAATATGTTCAAAAAAGCATGGGTTGTTTTACAACATCAGAAA
TTTATGAAGGCTCCCATATAGCGATGACTTACACAGCACTTTTATCACTG
CTTATATTGGGCGATGATTTATCTCGTGTCAACAAGAAAGCTATCACTGA
AAACCTAAAGTCACTACAACTCAAGAATGGGAGCTGATAAAGATACAAAG
AAGTGTGGTTTTCGGGGGTCATCATTCCTTGGTGGTGAATTCAATCCAGA
TGATGACAATCTTGTTTTTTGCATTGTCTGGTTTGGATCTCTTGAATGCC
TTGGATAAAATTGAAAATGATAAGAATAAGATTATTGATTGGATTTACTC
ACTGCAAATACTCCCTGGTGAAAATACAGATGAAGATAGATAAACATGTG
AAATATTTCATAAGATGCTTGAATGCACTTCCTGGAGCTTATACATCAAT
AGACACTAGCAGATGCACTGCATACCTATTTTGGAATTTGTGGCATGTCG
CTTATGAATTTGTACAACCTCCAGCCATTATCTCCTGCATTGAACATCAG
CGAACGAGCACACCAACATCTCAAGACTCTTCATAATACAAACACAATGG
ATATTTCTTGACTTTTGGATTGCTTTCAATTTGTAGATATAGAAAAGAAT
CGAGAGTTTTTGTTAACAACGCAACACAATATTACTGGCGGTTTCAGTAA
ATGGCCAAATTATCACTCTGGTGGCTCTACCTTTTGTGCTGTAGCATCAT
TACATCTCATGGGAGAATTAGAAAATTGCTTTGACTGTAAGAAATTGGAG
AAACTGAAGAGGTGGTGCTTAGTACGACAGAAAAGTGGATTTCAAGGCCG
CCCTAATAAACCTGTTGATACTTGTTATTCATTCTGGGTTGGAGCATCTC
TAAAGGGTTATGATCATGGCATTTCTCAAGGACCACAGCTAGAATCTCAT
GTTTCTACTCAACACCTGAAGGAAGTGAGAACGACATGAGATTTTTATAT
TGCGCTTGCTGTATATCCTACATCATTGATAACTGGAGTGGTGTAAACAA
GAAATTAGCTGTGAAATATGTTCAAAAAAGCATGGGTTGTTTTACAACAT
CAGAAATTTATGAAGGCTCCCATATAGCGATGACTTACACAGCACTTTTA
TCACTGCTTATATTGGGCGATGATTTATCTCGTGTCAACAAGAAAGCTAT
CACTGAAAACCTAAAGTCACTACAACTCAAGAATGGGAGCTGATAAAGAT
ACAAAGAAGTGTGGTTTTCGGGGGTCATCATTCCTTGGTGGTGAATTCAA
TCCAGATGATGACAATCTTGTTTTTTGCATTGTCTGGTTTGGATCTCTTG
AATGCCTTGGATAAAATTGAAAATGATAAGAATAAGATTATTGATTGGAT
TTACTCACTGCAAATACTCCCTGGTGAAAATACAGATGAAGATAGATAAA
CATGTGAAATATTTCATAAGATGCTTGAATGCACTTCCTGGAGCTTATAC
ATCAATAGACACTAGCAGATGCACTGCATACCTATTTTGGAATTTGTGGC
ATGTCGCTTATGAATTTGTACAACCTCCAGCCATTATCTCCTGCATTGAA
CATCAGCGAACGAGCACACCAACATCTCAAGACTCTTCATAATACAAACA
CAATGGATATTTCTTGACTTTTGGATTGCTTTCAATTTGTAGATATAGAA
AAGAATCGAGAGTTTTTGTTAACAACGCAACACAATATTACTGGCGGTTT
CAGTAAATGGCCAAATTATCACTCTGGTGGCTCTACCTTTTGTGCTGTAG
CATCATTACATCTCATGGGAGAATTAGAAAATTGCTTTGACTGTAAGAAA
TTGGAGAAACTGAAGAGGTGGTGCTTAGTACGACAGAAAAGTGGATTTCA
AGGCCGCCCTAATAAACCTGTTGATACTTGTTATTCATTCTGGGTTGGAG
CATCTCTAAAGGGTTATGATCATGGCATTTCTCAAGGACCACAGCTAGAA
TCTCATGTTTCTACTCAACACCTGAAGGAAGTGAGAACGACATGAGATTT
TTATATTGCGCTTGCTGTATATCCTACATCATTGATAACTGGAGTGGTGT
AAACAAGAAATTAGCTGTGAAATATGTTCAAAAAAGCATGGGTTGTTTTA
CAACATCAGAAATTTATGAAGGCTCCCATATAGCGATGACTTACACAGCA
CTTTTATCACTGCTTATATTGGGCGATGATTTATCTCGTGTCAACAAGAA
AGCTATCACTGAAAACCTAAAGTCACTACAACTCAAGAATGGGAGCTGAT
AAAGATACAAAGAAGTGTGGTTTTCGGGGGTCATCATTCCTTGGTGGTGA
ATTCAATCCAGATGATGACAATCTTGTTTTTTGCATTGTCTGGTTTGGAT
CTCTTGAATGCCTTGGATAAAATTGAAAATGATAAGAATAAGATTATTGA
TTGGATTTACTCACTGCAAATACTCCCTGGTGAAAATACAGATGAAGATA
GATAAACATGTGAAATATTTCATAAGATGCTTGAATGCACTTCCTGGAGC
TTATACATCAATAGACACTAGCAGATGCACTGCATACCTATTTTGGAATT
TGTGGCATGTCGCTTATGAATTTGTACAACCTCCAGCCATTATCTCCTGC
ATTGAACATCAGCGAACGAGCACACCAACATCTCAAGACTCTTCATAATA
CAAACACAATGGATATTTCTTGACTTTTGGATTGCTTTCAATTTGTAGAT
ATAGAAAAGAATCGAGAGTTTTTGTTAACAACGCAACACAATATTACTGG
CGGTTTCAGTAAATGGCCAAATTATCACTCTGGTGGCTCTACCTTTTGTG
CTGTAGCATCATTACATCTCATGGGAGAATTAGAAAATTGCTTTGACTGT
AAGAAATTGGAGAAACTGAAGAGGTGGTGCTTAGTACGACAGAAAAGTGG
ATTTCAAGGCCGCCCTAATAAACCTGTTGATACTTGTTATTCATTCTGGG
TTGGAGCATCTCTAAAGGGTTATGATCATGGCATTTCTCAAGGACCACAG
CTAGAATCTCATGTTTCTACTCAACACCTGAAGGAAGTGAGAACGACATG
AGATTTTTATATTGCGCTTGCTGTATATCCTACATCATTGATAACTGGAG
TGGTGTAAACAAGAAATTAGCTGTGAAATATGTTCAAAAAAGCATGGGTT
GTTTTACAACATCAGAAATTTATGAAGGCTCCCATATAGCGATGACTTAC
ACAGCACTTTTATCACTGCTTATATTGGGCGATGATTTATCTCGTGTCAA
CAAGAAAGCTATCACTGAAAACCTAAAGTCACTACAACTCAAGAATGGGA
GCTGATAAAGATACAAAGAAGTGTGGTTTTCGGGGGTCATCATTCCTTGG
TGGTGAATTCAATCCAGATGATGACAATCTTGTTTTTTGCATTGTCTGGT
TTGGATCTCTTGAATGCCTTGGATAAAATTGAAAATGATAAGAATAAGAT
TATTGATTGGATTTACTCACTGCAAATACTCCCTGGTGAAAATACAGATG
AAGATAGATAAACATGTGAAATATTTCATAAGATGCTTGAATGCACTTCC
TGGAGCTTATACATCAATAGACACTAGCAGATGCACTGCATACCTATTTT
GGAATTTGTGGCATGTCGCTTATGAATTTGTACAACCTCCAGCCATTATC
TCCTGCATTGAACATCAGCGAACGAGCACACCAACATCTCAAGACTCTTC
ATAATACAAACACAATGGATATTTCTTGACTTTTGGATTGCTTTCAATTT
GTAGATATAGAAAAGAATCGAGAGTTTTTGTTAACAACGCAACACAATAT
TACTGGCGGTTTCAGTAAATGGCCAAATTATCACTCTGGTGGCTCTACCT
TTTGTGCTGTAGCATCATTACATCTCATGGGAGAATTAGAAAATTGCTTT
GACTGTAAGAAATTGGAGAAACTGAAGAGGTGGTGCTTAGTACGACAGAA
AAGTGGATTTCAAGGCCGCCCTAATAAACCTGTTGATACTTGTTATTCAT
TCTGGGTTGGAGCATCTCTAAAGGGTTATGATCATGGCATTTCTCAAGGA
CCACAGCTAGAATCTCATGTTTCTACTCAACACCTGAAGGAAGTGAGAAC
GACATGAGATTTTTATATTGCGCTTGCTGTATATCCTACATCATTGATAA
CTGGAGTGGTGTAAACAAGAAATTAGCTGTGAAATATGTTCAAAAAAGCA
TGGGTTGTTTTACAACATCAGAAATTTATGAAGGCTCCCATATAGCGATG
ACTTACACAGCACTTTTATCACTGCTTATATTGGGCGATGATTTATCTCG
TGTCAACAAGAAAGCTATCACTGAAAACCTAAAGTCACTACAACTCAAGA
ATGGGAGCTGATAAAGATACAAAGAAGTGTGGTTTTCGGGGGTCATCATT
CCTTGGTGGTGAATTCAATCCAGATGATGACAATCTTGTTTTTTGCATTG
TCTGGTTTGGATCTCTTGAATGCCTTGGATAAAATTGAAAATGATAAGAA
TAAGATTATTGATTGGATTTACTCACTGCAAATACTCCCTGGTGAAAATA
CAGATGAAGATAGATAAACATGTGAAATATTTCATAAGATGCTTGAATGC
ACTTCCTGGAGCTTATACATCAATAGACACTAGCAGATGCACTGCATACC
TATTTTGGAATTTGTGGCATGTCGCTTATGAATTTGTACAACCTCCAGCC
ATTATCTCCTGCATTGAACATCAGCGAACGAGCACACCAACATCTCAAGA
CTCTTCATAATACAAACACAATGGATATTTCTTGACTTTTGGATTGCTTT
CAATTTGTAGATATAGAAAAGAATCGAGAGTTTTTGTTAACAACGCAACA
CAATATTACTGGCGGTTTCAGTAAATGGCCAAATTATCACTCTGGTGGCT
CTACCTTTTGTGCTGTAGCATCATTACATCTCATGGGAGAATTAGAAAAT
TGCTTTGACTGTAAGAAATTGGAGAAACTGAAGAGGTGGTGCTTAGTACG
ACAGAAAAGTGGATTTCAAGGCCGCCCTAATAAACCTGTTGATACTTGTT
ATTCATTCTGGGTTGGAGCATCTCTAAAGGGTTATGATCATGGCATTTCT
CAAGGACCACAGCTAGAATCTCATGTTTCTACTCAACACCTGAAGGAAGT
GAGAACGACATGAGATTTTTATATTGCGCTTGCTGTATATCCTACATCAT
TGATAACTGGAGTGGTGTAAACAAGAAATTAGCTGTGAAATATGTTCAAA
AAAGCATGGGTTGTTTTACAACATCAGAAATTTATGAAGGCTCCCATATA
GCGATGACTTACACAGCACTTTTATCACTGCTTATATTGGGCGATGATTT
ATCTCGTGTCAACAAGAAAGCTATCACTGAAAACCTAAAGTCACTACAAC
TCAAGAATGGGAGCTGATAAAGATACAAAGAAGTGTGGTTTTCGGGGGTC
ATCATTCCTTGGTGGTGAATTCAATCCAGATGATGACAATCTTGTTTTTT
GCATTGTCTGGTTTGGATCTCTTGAATGCCTTGGATAAAATTGAAAATGA
TAAGAATAAGATTATTGATTGGATTTACTCACTGCAAATACTCCCTGGTG
AAAATACAGATGAAGATAGATAAACATGTGAAATATTTCATAAGATGCTT
GAATGCACTTCCTGGAGCTTATACATCAATAGACACTAGCAGATGCACTG
CATACCTATTTTGGAATTTGTGGCATGTCGCTTATGAATTTGTACAACCT
CCAGCCATTATCTCCTGCATTGAACATCAGCGAACGAGCACACCAACATC
TCAAGACTCTTCATAATACAAACACAATGGATATTTCTTGACTTTTGGAT
TGCTTTCAATTTGTAGATATAGAAAAGAATCGAGAGTTTTTGTTAACAAC
GCAACACAATATTACTGGCGGTTTCAGTAAATGGCCAAATTATCACTCTG
GTGGCTCTACCTTTTGTGCTGTAGCATCATTACATCTCATGGGAGAATTA
GAAAATTGCTTTGACTGTAAGAAATTGGAGAAACTGAAGAGGTGGTGCTT
AGTACGACAGAAAAGTGGATTTCAAGGCCGCCCTAATAAACCTGTTGATA
CTTGTTATTCATTCTGGGTTGGAGCATCTCTAAAGGGTTATGATCATGGC
ATTTCTCAAGGACCACAGCTAGAATCTCATGTTTCTACTCAACACCTGAA
GGAAGTGAGAACGACATGAGATTTTTATATTGCGCTTGCTGTATATCCTA
CATCATTGATAACTGGAGTGGTGTAAACAAGAAATTAGCTGTGAAATATG
TTCAAAAAAGCATGGGTTGTTTTACAACATCAGAAATTTATGAAGGCTCC
CATATAGCGATGACTTACACAGCACTTTTATCACTGCTTATATTGGGCGA
TGATTTATCTCGTGTCAACAAGAAAGCTATCACTGAAAACCTAAAGTCAC
TACAACTCAAGAATGGGAGCTGATAAAGATACAAAGAAGTGTGGTTTTCG
GGGGTCATCATTCCTTGGTGGTGAATTCAATCCAGATGATGACAATCTTG
TTTTTTGCATTGTCTGGTTTGGATCTCTTGAATGCCTTGGATAAAATTGA
AAATGATAAGAATAAGATTATTGATTGGATTTACTCACTGCAAATACTCC
CTGGTGAAAATACAGATGAAGATAGATAAACATGTGAAATATTTCATAAG
ATGCTTGAATGCACTTCCTGGAGCTTATACATCAATAGACACTAGCAGAT
GCACTGCATACCTATTTTGGAATTTGTGGCATGTCGCTTATGAATTTGTA
CAACCTCCAGCCATTATCTCCTGCATTGAACATCAGCGAACGAGCACACC
AACATCTCAAGACTCTTCATAATACAAACACAATGGATATTTCTTGACTT
TTGGATTGCTTTCAATTTGTAGATATAGAAAAGAATCGAGAGTTTTTGTT
AACAACGCAACACAATATTACTGGCGGTTTCAGTAAATGGCCAAATTATC
ACTCTGGTGGCTCTACCTTTTGTGCTGTAGCATCATTACATCTCATGGGA
GAATTAGAAAATTGCTTTGACTGTAAGAAATTGGAGAAACTGAAGAGGTG
GTGCTTAGTACGACAGAAAAGTGGATTTCAAGGCCGCCCTAATAAACCTG
TTGATACTTGTTATTCATTCTGGGTTGGAGCATCTCTAAAGGGTTATGAT
CATGGCATTTCTCAAGGACCACAGCTAGAATCTCATGTTTCTACTCAACA
CCTGAAGGAAGTGAGAACGACATGAGATTTTTATATTGCGCTTGCTGTAT
ATCCTACATCATTGATAACTGGAGTGGTGTAAACAAGAAATTAGCTGTGA
AATATGTTCAAAAAAGCATGGGTTGTTTTACAACATCAGAAATTTATGAA
GGCTCCCATATAGCGATGACTTACACAGCACTTTTATCACTGCTTATATT
GGGCGATGATTTATCTCGTGTCAACAAGAAAGCTATCACTGAAAACCTAA
AGTCACTACAACTCAAGAATGGGAGCTGATAAAGATACAAAGAAGTGTGG
TTTTCGGGGGTCATCATTCCTTGGTGGTGAATTCAATCCAGATGATGACA
ATCTTGTTTTTTGCATTGTCTGGTTTGGATCTCTTGAATGCCTTGGATAA
AATTGAAAATGATAAGAATAAGATTATTGATTGGATTTACTCACTGCAAA
TACTCCCTGGTGAAAATACAGATGAAGATAGATAAACATGTGAAATATTT
CATAAGATGCTTGAATGCACTTCCTGGAGCTTATACATCAATAGACACTA
GCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035878XLOC_035878Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056973-exon-scaffold_284-1575043694:1320787..1320812TCONS_00056973-exon-scaffold_284-1575043694:1320787..1320812Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1575043694:1320500..1320602TCONS_00056973-exon-scaffold_284-1575043694:1320500..1320602Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1575043694:1320055..1320182TCONS_00056973-exon-scaffold_284-1575043694:1320055..1320182Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1575043694:1319727..1319794TCONS_00056973-exon-scaffold_284-1575043694:1319727..1319794Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1575043694:1319227..1319381TCONS_00056973-exon-scaffold_284-1575043694:1319227..1319381Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1575043694:1318548..1318680TCONS_00056973-exon-scaffold_284-1575043694:1318548..1318680Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1575043694:1317865..1317910TCONS_00056973-exon-scaffold_284-1575043694:1317865..1317910Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1575043694:1317211..1317395TCONS_00056973-exon-scaffold_284-1575043694:1317211..1317395Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1575043694:1316210..1316318TCONS_00056973-exon-scaffold_284-1575043694:1316210..1316318Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1575043694:1315323..1316044TCONS_00056973-exon-scaffold_284-1575043694:1315323..1316044Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1510915933:1320787..1320812TCONS_00056973-exon-scaffold_284-1510915933:1320787..1320812Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1510915933:1320500..1320602TCONS_00056973-exon-scaffold_284-1510915933:1320500..1320602Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1510915933:1320055..1320182TCONS_00056973-exon-scaffold_284-1510915933:1320055..1320182Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1510915933:1319727..1319794TCONS_00056973-exon-scaffold_284-1510915933:1319727..1319794Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1510915933:1319227..1319381TCONS_00056973-exon-scaffold_284-1510915933:1319227..1319381Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1510915933:1318548..1318680TCONS_00056973-exon-scaffold_284-1510915933:1318548..1318680Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1510915933:1317865..1317910TCONS_00056973-exon-scaffold_284-1510915933:1317865..1317910Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1510915933:1317211..1317395TCONS_00056973-exon-scaffold_284-1510915933:1317211..1317395Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1510915933:1316210..1316318TCONS_00056973-exon-scaffold_284-1510915933:1316210..1316318Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1510915933:1315323..1316044TCONS_00056973-exon-scaffold_284-1510915933:1315323..1316044Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1491911889:1320787..1320812TCONS_00056973-exon-scaffold_284-1491911889:1320787..1320812Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1491911889:1320500..1320602TCONS_00056973-exon-scaffold_284-1491911889:1320500..1320602Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1491911889:1320055..1320182TCONS_00056973-exon-scaffold_284-1491911889:1320055..1320182Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1491911889:1319727..1319794TCONS_00056973-exon-scaffold_284-1491911889:1319727..1319794Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1491911889:1319227..1319381TCONS_00056973-exon-scaffold_284-1491911889:1319227..1319381Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1491911889:1318548..1318680TCONS_00056973-exon-scaffold_284-1491911889:1318548..1318680Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1491911889:1317865..1317910TCONS_00056973-exon-scaffold_284-1491911889:1317865..1317910Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1491911889:1317211..1317395TCONS_00056973-exon-scaffold_284-1491911889:1317211..1317395Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1491911889:1316210..1316318TCONS_00056973-exon-scaffold_284-1491911889:1316210..1316318Clytia hemisphaericaexon
TCONS_00056973-exon-scaffold_284-1491911889:1315323..1316044TCONS_00056973-exon-scaffold_284-1491911889:1315323..1316044Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056973-proteinTCONS_00056973-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1315323..1320812 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.1985	49.2279	18.4408	12.814	23.3018	17.2529	16.3968	16.5738	19.2512	18.5663	17.9228	14.3766	12.6184	10.6974	13.4257	14.4373	17.6584	19.198	7.43468	10.5795	14.273	14.7911	35.8777	34.3587	13.667	14.7483	19.9433	15.5115	34.9187	40.5573
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001330PFTB_repeat
IPR008930Terpenoid_cyclase/PrenylTrfase
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
Blast
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BLAST of TCONS_00056973 vs. Swiss-Prot (Human)
Match: PGTB1 (Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens GN=PGGT1B PE=1 SV=2)

HSP 1 Score: 403.29 bits (1035), Expect = 1.131e-135
Identity = 195/337 (57.86%), Postives = 261/337 (77.45%), Query Frame = 2 
Query:   71 YFIRCLNALPGAYTSIDTSRMTILFFALSGLDLLNALDKIENDKNKIIDWIYSLQILPGENTADKDTKKCGFRGSSFLGGEFNPDGCFTTSEIYEGSHIAMTYTAXXXXXXXXXXXXRVNKKAITENLKSLQLKNGSFYSTPEGSENDMRFLYCACCISYIIDNWSGVNKKLAVKYVQKSMGYDHGISQGPQLESHGGSTFCAVASLHLMGELENCFDCKKLEKLKRWCLVRQKSGFQGRPNKPVDTCYSFWVGASLKLLDCFQFVDIEKNREFLLTTQHNITGGFSKWPNYHSDALHTYFGICGMSLMNLYNLQPLSPALNISERAHQHLKTLHNT 1081
            +F RCL  LP  Y+S++TSR+TI FFALSGLD+L++LD +  +K+ II+WIYSLQ+LP E+ ++ +  +CGFRGSS+LG  FNP     T+  Y+  HIAMTYT L  L+ILGDDLSRVNK+A    L++LQL++GSF + PEGSENDMRF+YCA CI Y+++NWSG++ K A+ Y+++SM YD+G++QG  LESHGGSTFC +ASL LMG+LE  F  K+L ++KRWC++RQ++G+ GRPNKPVDTCYSFWVGA+LKLL  FQ+ + EKNR ++L+TQ  + GGF+KWP+ H DALH YFGICG+SLM    +  + PALN+S R  + L  LH +
Sbjct:   28 FFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVV--NKDDIIEWIYSLQVLPTEDRSNLN--RCGFRGSSYLGIPFNPSKAPGTAHPYDSGHIAMTYTGLSCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLLDLHQS 360
The following BLAST results are available for this feature:
BLAST of TCONS_00056973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGTB11.131e-13557.86Geranylgeranyl transferase type-1 subunit beta OS=... [more]
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