TCONS_00057247 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057247
Unique NameTCONS_00057247
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057247 ID=TCONS_00057247|Name=TCONS_00057247|organism=Clytia hemisphaerica|type=transcript|length=569bp
TCCTTACTGGTGAACATATTCAGTAAATTTCCAAGCTCTTTTTACAGCCG
TATTGCAGAAAATGATTTACCGAGTTTAATGTTCGTTGTAAGTGCATTAC
TACAGATAAAAGATGacgaaaaagtgaaatattGTAGTGGGAATGGTCTC
ACGGACAATATAGATAGAGTGGACACACTTACTGAAAATGTTTGATTGCC
CGTTTGGTGTTAACAGACGAGATGTTCATATCGCAACTGAAAAGTCTTTT
AAACGGACCGGAAAATTTTGATATGCTGTTCAAAGATTTGTTGTTCTCAA
GCAGCGATAACGCTATACGGTGTGATGTTTTGGCTGTTATGAGTCATCTA
GCGCGCCAGTCGGCTGATACTTCAAGAGTTGTTTCAAGAATCTTTGAGCA
AGAAAACGGTTTTTCAAGGCTATTTTTGTTACTACACGATGAGGATTCAA
GGCTAGTCGTTCGGGCTGCTATGGTTATTGCAAACACATTGAAACACTCG
AGTGATCTTTATGGAGATATTGTCAGGATGAAGGTCCATCCAACACTATT
TGAATTACTTCAAAGTCAA
Run BLAST on NCBI

transcript from alignment at scaffold_286:356373..358533-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057247 ID=TCONS_00057247|Name=TCONS_00057247|organism=Clytia hemisphaerica|type=transcript|length=2161bp|location=Sequence derived from alignment at scaffold_286:356373..358533- (Clytia hemisphaerica)
TCCTTACTGGTGAACATATTCAGTAAATTTCCAAGCTCTTTTTACAGCCG
TATTGCAGAAAATGATTTACCGAGTTTAATGTTCGTTGTAAGTGCATTAC
TACAGATAAAAGATGACGAAAAAGTGAAATATTGTAGTGGGAATGGTCTC
ACGGACAATATAGATAGAGTGGACACACTTACTGAAAATGTGATTAAAAT
TCTATGTCTTCCGTTTGCGTTGGATCTTGATCAAANGAAAATGTGATTAA
AATTCTTTGTCTTCCTTTTGCATTGGATCTTGATCAATGTCTCTTGTATG
AGATTCTATGTTCGTTATATCAAAGCTCAACTATAGGATCGCTGTTTTTT
TTGCTGTCTAAACCAAGTATGATTGACAACCAAGAGGAAACTTCGATTGT
TGTAGGTTTGATTGCCCGTTTGGTGTTAACAGACGAGATGTTCATATCGC
AACTGAAAAGTCTTTTAAACGGACCGGAAAATTTTGATATGCTGTTCAAA
GATTTGTTGTTCTCAAGCAGCGATAACGCTATACGGTGTGATGTTTTGGC
TGTTATGAGTCATCTAGCGCGCCAGTCGGCTGATACTTCAAGAGTTGTTT
CAAGAATCTTTGAGCAAGAAAACGGTAAGCTATTTACCAACACCTGTTCT
AATTGACAACTAGTCTCTTTGGGAAAATATTGGCAGTTGTGGAAATCACT
CTAAAGAGATTTAGTCTAAATTTGCTAACATGGTTTCCACATATTAGCAA
GTATATTTTATTTCTACTGACCCTACTTTTAAAAATAGTTATCAAATAAA
GGATAGTATTGGTAGGTTCCCAAATCATGGTCATTAAAAAATACCCTGGT
CTGTAAAGGCTTTTGAAAACAAACGAAACATTTTTAAATTCTCCCAAATT
CTCTTTAGCCCGGTCTGGAAGGCTTTTGTTTCTTTCTTATTATATTGACA
GTTAGAGCTTTTGTACGTAAATAGATTTGCTTTGCATATTTTTTGATCAT
GTGACTAGAAAATAAACCCAAGAATCAAAAAATGGTAACGTGATCAAAAA
GTGTGCATATCGCAACTTTCCTTTTATTTACCTTATTGGTATATATTTTC
GCGTGTTACAAATTTTCGCGGGTACTTAATTTCGTCAGTTTTTTGGTCAA
TTTTCGCGAAATTTAATACTGCTTAAATTTTTCAAAATTACAAAATCGCG
AAATTAAATACACGCGAAAAATTTTTTCTTAGTATTTTGTTAGTTTTTTA
CATCAAAAACGTTGTGTTTCAAGCAAAATCAGTCTTTTTCTTGCTTTATA
TTCCCACTTTCTGAAAATACCTAGTTTAGTGAATCGCGAAATTTATTACA
CGCGAAAATTTTCCAGAAGTCGGCAATCGCGAAATTTAATACACGCGAAA
CACGTTTTTTCGAAAAAATTTCGCGATTCGCAAAAATCTGTAACACGCGA
AAATATATACCAATAAGGTATAAAAAATGAAAATTTGACAATAAAGCTAA
CACAATAGATTATTACCAGACCAGGTTTTTTATAATGGCTACTAGATATT
GCCAACTGTTACTTATAGGTTTTTCAAGGCTATTTTTGTTACTACACGAT
GAGGATTCAAGGCTAGTCGTTCGGGCTGCTATGGTTATTGCAAACACATT
GAAACACTCGAGTGATCTTTATGGAGATATTGTCAGGTGAGTAAATATTT
CGAATTTTTTATCCTCTTTAAATCATTTCACGGTGATATGCAAACATGCT
GTTATCTTTTTTGGTAACATTTCCACAGGAAAAAGATTGGAGCAAGACTG
GTCAGAAAGAGGAAAAGAAAAACATTTTTTGCTTATATCAGCACAATATA
ACAATATGTAGACACCGCGTTTTGATATGAAACTACTCCTGGGTTATTTG
TAAAAAGACTTCAAAAATTAGAGTGAAGTTTTTATGGTTCCCTTTTTACG
CCGGTCCGATTGGAATGAATTTTTAGCTTTTATTCTTTTTTCTAACTCGT
CCTTGGCAGCTTACATCTTAGCAAAGAAAGGGTTATTTGTGCGCCACCTT
CCCCGGGAATAAAAGAAATATTAAAATCTTTGTTTATATCTTTAATATTA
TTTTGTTCCCTTTTTCAGGATGAAGGTCCATCCAACACTATTTGAATTAC
TTCAAAGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036062XLOC_036062Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057247-exon-scaffold_286-1575043694:358345..358533TCONS_00057247-exon-scaffold_286-1575043694:358345..358533Clytia hemisphaericaexon
TCONS_00057247-exon-scaffold_286-1575043694:357910..358128TCONS_00057247-exon-scaffold_286-1575043694:357910..358128Clytia hemisphaericaexon
TCONS_00057247-exon-scaffold_286-1575043694:356848..356965TCONS_00057247-exon-scaffold_286-1575043694:356848..356965Clytia hemisphaericaexon
TCONS_00057247-exon-scaffold_286-1575043694:356373..356415TCONS_00057247-exon-scaffold_286-1575043694:356373..356415Clytia hemisphaericaexon
TCONS_00057247-exon-scaffold_286-1510915933:358345..358533TCONS_00057247-exon-scaffold_286-1510915933:358345..358533Clytia hemisphaericaexon
TCONS_00057247-exon-scaffold_286-1510915933:357910..358128TCONS_00057247-exon-scaffold_286-1510915933:357910..358128Clytia hemisphaericaexon
TCONS_00057247-exon-scaffold_286-1510915933:356848..356965TCONS_00057247-exon-scaffold_286-1510915933:356848..356965Clytia hemisphaericaexon
TCONS_00057247-exon-scaffold_286-1510915933:356373..356415TCONS_00057247-exon-scaffold_286-1510915933:356373..356415Clytia hemisphaericaexon
TCONS_00057247-exon-scaffold_286-1491911889:358345..358533TCONS_00057247-exon-scaffold_286-1491911889:358345..358533Clytia hemisphaericaexon
TCONS_00057247-exon-scaffold_286-1491911889:357910..358128TCONS_00057247-exon-scaffold_286-1491911889:357910..358128Clytia hemisphaericaexon
TCONS_00057247-exon-scaffold_286-1491911889:356848..356965TCONS_00057247-exon-scaffold_286-1491911889:356848..356965Clytia hemisphaericaexon
TCONS_00057247-exon-scaffold_286-1491911889:356373..356415TCONS_00057247-exon-scaffold_286-1491911889:356373..356415Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:356373..358533 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.60692e-07	0.435182	0.617148	0	0	0.623617	0.546725	2.39095	1.88089	1.76754	0	0.42961	0.000129063	0	0.643088	0	1.08529	0.384689	2.51124	0	0	1.82386	0.0795023	1.33106	3.08878e-09	1.75884	0.274933	2.09521	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057247 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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