TCONS_00057222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057222
Unique NameTCONS_00057222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057222 ID=TCONS_00057222|Name=TCONS_00057222|organism=Clytia hemisphaerica|type=transcript|length=2785bp
TTCAATCTTGTCATTTCATCTTACAGGCAACAAGTGCTTTGGATGCTGAG
AGTGAACATTTGGTTCAAGAAGCTATCGATCGAGCCATGGTTGGACGCAC
TGTACTTGTTATTGCTCACCGTTTGTCCACGGTCCGTGATGCGTCCAGGG
TCATCGTCATCAACAAGGGAACCATCGCTGAACAAGGAACGCATGAGGAA
TTATTAGAATTGAACGGTGTTTACAAGAAACTCGTTTTACGTCAATTAGA
AAAAAATGCTTCGGATTTTAATAATGAAGATGCGGATGATGAAAATGGTG
GAGAAAATAAAACAGATGATGGAGGAGATGGAAAAGGAAATGGCGGACAC
AGGCCAAGTTTGATAAGACAAATTTCGGACACCTTAATGTAGCCTGTTTG
ACTTTCTTGACATAAAGGCTGGTCTTAACTTTCGCGCGACACgagcgaaa
atttttgacgtttttgtaagctcattggtcggttgaaaaatgaagcaatt
ccattggtagaaattgacgtaacggatgaaaaaagtagaacttacttcaa
ctttttttttttcgtttgcgcgaaacttttttatgacgtaatcttttctc
caggcaaaaaaggttaagaaaaaaagctgtcgcccatttcgcgcgaaagt
ggagaccggccttaaagtAGTATAGTATTTAGGCTAATTTATTCTGCGGT
TCATTTGTTGTGTGGTATTTGAGTTGGAAGTTTGTTCCCGTCAATAGTTC
CTGTTTTTTGTTAGCCTTCAATCGGCTTAACCGATTTCGCAGGTTTCTTT
CTCCGTAAATCTGTTGATGGTATCCCGCAATCGTGGCATGTCGTTTCAGA
TGaaattaccgagtttatgtatctgtgtttttctgcgCCGGATACGGTAA
GGTTataatttgtctacatcctcACTGACTGAGGACGCGACGGTAAATCa
gttaccgtcctcgattttgctggtcaaaactgcgggtttttccaaatagC
TTCAGTCACTTaaccgtcctcaaaagtacaAATATATGAACTTGCTATTA
TGAGTAGTTATGAAGGAAATGAGAAACTGGAACTAGAAAACTAGAAAGAC
TTAATAAATAGAGCTAAATTAACGCgatgattaaattttttaacTATAAT
GATATGTACATTACTGATTGGCAATGATATACAATTTTACGTGTTTGACT
TATAGTTTACTTGCATtgcagtcaactctctctaattcgaacttctgtaa
ttcgaatctttctgtaattcaaaccAAATAATTGGCCCCTTCAGCTGTAA
GGTGGTTTGAAATGACCCCTATAATTCGAATCTGGAGTATGTTTTATATA
TATGAGGCATTATTAACTTAAGGAGACGAGCAATTGTACaaattaaggag
acattcgagttatagaggttcaagttaAAAAGTTTCCGTTGTATGTACTT
ATTAAACTTTTGAGACGTCTAGGTCCTAACAATCGATAAGTCTAGTCAAG
TAGAGGACTATATGTAATATTTGAATAGGTATGCGAGAGTAGTTtaaagc
aagtttttatttttatttaccttttgttaataaaatacaaaaagtaTTGA
TTTGTGACTCCTTCCAGATCCATAATTCACATGCCCCTAACTGATGCAGG
AAGATCAGACATCAAGCTTCCTTCTTTTGaacaaataattttcatttcta
aTTAAGGCTTGAGCTTTCTATTCTTCGACTTATAAAGGTATTCGTACGCT
CGCtcctttttggaaatttgaacaaaaactgatttttgagaGTTACTTAA
AATAAGTAGACATTTTGAACATTATTCTTTCACACGCTTTAAAATTAAGA
TTGTTTAGTTTACAGAATGCTaccttttttattagaacttgCTAATATTA
TACAGTGTGTTccgcaaaaaagtatactcaaaAAGTAAAGCGTAGCTCTG
AAAAAACTATCTATATATTGAGCTTAATTTTTAAACCAGGTAAAAGCATA
ACCATCAAGCTTTTTGTGGTCGAAAATTCATTGCAACAGAATTTTCGATT
CAAGAGATATCAAGTTATAAGAAAGCAAAGGTACAGATTTTAAACATCGG
AGATCaagtaaattttttcataattacTTCACTAAAAAGTAACGTTAATT
TCAAATtggaagaaagataaaaaattctaaatttttaatgcaaaagaaag
aaaaatcattctTCTTTCCACTGCTGAAagaatttctttggaaaaaccTA
TTGTTAATGAGATAATTAATTTCCAAGCTGTATAGGTCAATctttcaaaa
tgcaaagtttaatcaaattgacaaaaaaacagacctgtcaatcaaaaatt
aattaactcTTGGTAATAAAAATGATGCATCTCGACTTTTTTTAAACTCC
AACAGGGTGTAGTAAGAGCGTCATATCTCACTAAAGAAGAATTGTTCGAA
ATGAAATTTGGACAGTAGAAAGCTGAATAGCTGTGCTTTcagtattttta
aaaatcattcaaaacagatcatcatttatttcaaaagttgactttattta
tttgagtatacttttttgcggAACACACTGTATAACTAGTGGTTAGCGAT
TTATgcacattgaaaaaaaaactgttaTTGTTCCTTGTAAAATATGGATA
ATTTTTAGCCAATTGATTTATTTTGTAATGActttaatcattttttcatc
TAATAGATATAATATTGAAAGAAAAACGATGATTTTGCAACTAAAgtgta
tccagatataattgtcAGTAAGAACAAGAGCCTGT
Run BLAST on NCBI

protein sequence of TCONS_00057222-protein

>TCONS_00057222-protein ID=TCONS_00057222-protein|Name=TCONS_00057222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
QSCHFILQATSALDAESEHLVQEAIDRAMVGRTVLVIAHRLSTVRDASRV
IVINKGTIAEQGTHEELLELNGVYKKLVLRQLEKNASDFNNEDADDENGG
ENKTDDGGDGKGNGGHRPSLIRQISDTLM
Run BLAST on NCBI

transcript from alignment at scaffold_286:1006706..1010085+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057222 ID=TCONS_00057222|Name=TCONS_00057222|organism=Clytia hemisphaerica|type=transcript|length=3380bp|location=Sequence derived from alignment at scaffold_286:1006706..1010085+ (Clytia hemisphaerica)
TTCAATCTTGTCATTTCATCTTACAGGCAACAAGTGCTTTGGATGCTGAG
AGTGAACATTTGGTTCAAGAAGCTATCGATCGAGCCATGGTTGGACGCAC
TGTACTTGTTATTGCTCACCGTTTGTCCACGGTCCGTGATGCGTCCAGGG
TAAgaacatttcgaaattttgtACCGTGTACCGTCGTTCTGTATAAGATT
CCATTTCCGCACTAtgattcttgtcacttttccaGATCTTACCGCTATTT
CTTCCGGAATAaccggcatgagattggaaagggtaCGCGGAAAATCCCAC
CAAACTGCCTAGCTTTCCGGAGCTCACTTTTCAACTACCCGAAGTtctgg
tctttttccgctagTAAAGTGGCCCCTTGCCACAGTCTTAGTAtggaaat
gggaaacttatacaaaacgacggtataCCCTCAATGGTTTTCAACTACTT
TTCAACTTGGGTGTGTGTGTCCAGTTTTACAGTTAATTAGTCCGCTCATG
TAGTTTTTCATTTCTGTTTGTTAATAGcgtattcgaatgttttgaaattg
aaatgttcGAAGATCCAACGGAAAACAGAAAACGTCCAttagagggtcag
taaacgcgggaaaatataTATAAGATAAACTATACATggttaaaagaacg
acaaattacgcatgcgtgttatgaTGCAGGATTTTTAAATTTAGAGGAAC
GACTGGTTTTTTAACCGACGCCTCGATATTCCTTCTATTTCTAGGTCATC
GTCATCAACAAGGGAACCATCGCTGAACAAGGAACGCATGAGGAATTATT
AGAATTGAACGGTGTTTACAAGAAACTCGTTTTACGTCAATTAGAAAAAA
ATGCTTCGGATTTTAATAATGAAGATGCGGATGATGAAAATGGTGGAGAA
AATAAAACAGATGATGGAGGAGATGGAAAAGGAAATGGCGGACACAGGCC
AAGTTTGATAAGACAAATTTCGGACACCTTAATGTAGCCTGTTTGACTTT
CTTGACATAAAGGCTGGTCTTAACTTTCGCGCGACACgagcgaaaatttt
tgacgtttttgtaagctcattggtcggttgaaaaatgaagcaattccatt
ggtagaaattgacgtaacggatgaaaaaagtagaacttacttcaactttt
tttttttcgtttgcgcgaaacttttttatgacgtaatcttttctccaggc
aaaaaaggttaagaaaaaaagctgtcgcccatttcgcgcgaaagtggaga
ccggccttaaagtAGTATAGTATTTAGGCTAATTTATTCTGCGGTTCATT
TGTTGTGTGGTATTTGAGTTGGAAGTTTGTTCCCGTCAATAGTTCCTGTT
TTTTGTTAGCCTTCAATCGGCTTAACCGATTTCGCAGGTTTCTTTCTCCG
TAAATCTGTTGATGGTATCCCGCAATCGTGGCATGTCGTTTCAGATGaaa
ttaccgagtttatgtatctgtgtttttctgcgCCGGATACGGTAAGGTTa
taatttgtctacatcctcACTGACTGAGGACGCGACGGTAAATCagttac
cgtcctcgattttgctggtcaaaactgcgggtttttccaaatagCTTCAG
TCACTTaaccgtcctcaaaagtacaAATATATGAACTTGCTATTATGAGT
AGTTATGAAGGAAATGAGAAACTGGAACTAGAAAACTAGAAAGACTTAAT
AAATAGAGCTAAATTAACGCgatgattaaattttttaacTATAATGATAT
GTACATTACTGATTGGCAATGATATACAATTTTACGTGTTTGACTTATAG
TTTACTTGCATtgcagtcaactctctctaattcgaacttctgtaattcga
atctttctgtaattcaaaccAAATAATTGGCCCCTTCAGCTGTAAGGTGG
TTTGAAATGACCCCTATAATTCGAATCTGGAGTATGTTTTATATATATGA
GGCATTATTAACTTAAGGAGACGAGCAATTGTACaaattaaggagacatt
cgagttatagaggttcaagttaAAAAGTTTCCGTTGTATGTACTTATTAA
ACTTTTGAGACGTCTAGGTCCTAACAATCGATAAGTCTAGTCAAGTAGAG
GACTATATGTAATATTTGAATAGGTATGCGAGAGTAGTTtaaagcaagtt
tttatttttatttaccttttgttaataaaatacaaaaagtaTTGATTTGT
GACTCCTTCCAGATCCATAATTCACATGCCCCTAACTGATGCAGGAAGAT
CAGACATCAAGCTTCCTTCTTTTGaacaaataattttcatttctaaTTAA
GGCTTGAGCTTTCTATTCTTCGACTTATAAAGGTATTCGTACGCTCGCtc
ctttttggaaatttgaacaaaaactgatttttgagaGTTACTTAAAATAA
GTAGACATTTTGAACATTATTCTTTCACACGCTTTAAAATTAAGATTGTT
TAGTTTACAGAATGCTaccttttttattagaacttgCTAATATTATACAG
TGTGTTccgcaaaaaagtatactcaaaAAGTAAAGCGTAGCTCTGAAAAA
ACTATCTATATATTGAGCTTAATTTTTAAACCAGGTAAAAGCATAACCAT
CAAGCTTTTTGTGGTCGAAAATTCATTGCAACAGAATTTTCGATTCAAGA
GATATCAAGTTATAAGAAAGCAAAGGTACAGATTTTAAACATCGGAGATC
aagtaaattttttcataattacTTCACTAAAAAGTAACGTTAATTTCAAA
Ttggaagaaagataaaaaattctaaatttttaatgcaaaagaaagaaaaa
tcattctTCTTTCCACTGCTGAAagaatttctttggaaaaaccTATTGTT
AATGAGATAATTAATTTCCAAGCTGTATAGGTCAATctttcaaaatgcaa
agtttaatcaaattgacaaaaaaacagacctgtcaatcaaaaattaatta
actcTTGGTAATAAAAATGATGCATCTCGACTTTTTTTAAACTCCAACAG
GGTGTAGTAAGAGCGTCATATCTCACTAAAGAAGAATTGTTCGAAATGAA
ATTTGGACAGTAGAAAGCTGAATAGCTGTGCTTTcagtatttttaaaaat
cattcaaaacagatcatcatttatttcaaaagttgactttatttatttga
gtatacttttttgcggAACACACTGTATAACTAGTGGTTAGCGATTTATg
cacattgaaaaaaaaactgttaTTGTTCCTTGTAAAATATGGATAATTTT
TAGCCAATTGATTTATTTTGTAATGActttaatcattttttcatcTAATA
GATATAATATTGAAAGAAAAACGATGATTTTGCAACTAAAgtgtatccag
atataattgtcAGTAAGAACAAGAGCCTGT

Coding sequence (CDS) from alignment at scaffold_286:1006706..1010085+

>TCONS_00057222 ID=TCONS_00057222|Name=TCONS_00057222|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_286:1006706..1010085+ (Clytia hemisphaerica)
CAATCTTGTCATTTCATCTTACAGGCAACAAGTGCTTTGGATGCTGAGAG
TGAACATTTGGTTCAAGAAGCTATCGATCGAGCCATGGTTGGACGCACTG
TACTTGTTATTGCTCACCGTTTGTCCACGGTCCGTGATGCGTCCAGGGTC
ATCGTCATCAACAAGGGAACCATCGCTGAACAAGGAACGCATGAGGAATT
ATTAGAATTGAACGGTGTTTACAAGAAACTCGTTTTACGTCAATTAGAAA
AAAATGCTTCGGATTTTAATAATGAAGATGCGGATGATGAAAATGGTGGA
GAAAATAAAACAGATGATGGAGGAGATGGAAAAGGAAATGGCGGACACAG
GCCAAGTTTGATAAGACAAATTTCGGACACCTTAATGTAGCAATCTTGTC
ATTTCATCTTACAGGCAACAAGTGCTTTGGATGCTGAGAGTGAACATTTG
GTTCAAGAAGCTATCGATCGAGCCATGGTTGGACGCACTGTACTTGTTAT
TGCTCACCGTTTGTCCACGGTCCGTGATGCGTCCAGGGTCATCGTCATCA
ACAAGGGAACCATCGCTGAACAAGGAACGCATGAGGAATTATTAGAATTG
AACGGTGTTTACAAGAAACTCGTTTTACGTCAATTAGAAAAAAATGCTTC
GGATTTTAATAATGAAGATGCGGATGATGAAAATGGTGGAGAAAATAAAA
CAGATGATGGAGGAGATGGAAAAGGAAATGGCGGACACAGGCCAAGTTTG
ATAAGACAAATTTCGGACACCTTAATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036049XLOC_036049Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057222-proteinTCONS_00057222-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057222-exon-scaffold_286-1491911889:1006706..1006854TCONS_00057222-exon-scaffold_286-1491911889:1006706..1006854Clytia hemisphaericaexon
TCONS_00057222-exon-scaffold_286-1510915933:1006706..1006854TCONS_00057222-exon-scaffold_286-1510915933:1006706..1006854Clytia hemisphaericaexon
TCONS_00057222-exon-scaffold_286-1575043694:1006706..1006854TCONS_00057222-exon-scaffold_286-1575043694:1006706..1006854Clytia hemisphaericaexon
TCONS_00057222-exon-scaffold_286-1491911889:1007450..1010085TCONS_00057222-exon-scaffold_286-1491911889:1007450..1010085Clytia hemisphaericaexon
TCONS_00057222-exon-scaffold_286-1510915933:1007450..1010085TCONS_00057222-exon-scaffold_286-1510915933:1007450..1010085Clytia hemisphaericaexon
TCONS_00057222-exon-scaffold_286-1575043694:1007450..1010085TCONS_00057222-exon-scaffold_286-1575043694:1007450..1010085Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:1006706..1010085 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.30641	4.19159	5.83389	7.34463	10.8045	7.98233	13.2716	15.1244	11.542	11.3531	22.1927	6.88003	8.89878	7.22537	4.76219	6.6253	8.01915	7.34273	4.74078	7.71181	8.13094	8.88302	6.61246	7.88244	9.97288	16.3265	9.23682	8.54423	15.8291	11.0114
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
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BLAST of TCONS_00057222 vs. Swiss-Prot (Human)
Match: ABCBA (ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.008e-20
Identity = 48/75 (64.00%), Postives = 64/75 (85.33%), Query Frame = 3 
Query:   24 QATSALDAESEHLVQEAIDRAMVGRTVLVIAHRLSTVRDASRVIVINKGTIAEQGTHEELL-ELNGVYKKLVLRQ 245
            +ATSALDAE+E+LVQEA+DR M GRTVLVIAHRLST+++A+ V V+++G I E G HEELL + NG+Y+KL+ +Q
Sbjct:  659 EATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 733
The following BLAST results are available for this feature:
BLAST of TCONS_00057222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABCBA1.008e-2064.00ATP-binding cassette sub-family B member 10, mitoc... [more]
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