TCONS_00005704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005704
Unique NameTCONS_00005704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005704 ID=TCONS_00005704|Name=TCONS_00005704|organism=Clytia hemisphaerica|type=transcript|length=399bp
acttattaaaaaaagttacaaaaagttGATGAACTTGACATCGCTAACCG
AACGTACTTCATAGCTTTGATATAAGAATAACTAACCTTAtcaacttatt
aaaaaaagttacaaaaagttGATGAACTTGACATCGCTAACCGAACCAAC
TTTTAGCGTTgacataaaaatacaaaaagaaaagtGCTAAAAATGCAATA
TAATTTAAAAGTATGTACGTGCAAAAAGTTGGCGATTTTACATCGCTAAC
CGAACGTACTTCATAGCTTTGATATAAGAGTAACTAACCTAGtcaactta
ttaaaaaaagttacaaaaaattGGTGAGCTTGACATCGCTAAACGAACTA
ACTTTTAGCGTTGACATAAAAATACAagaatgttgaaaatttgccaaat
Run BLAST on NCBI

transcript from alignment at sc0000054:630687..631085

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005704 ID=TCONS_00005704|Name=TCONS_00005704|organism=Clytia hemisphaerica|type=transcript|length=399bp|location=Sequence derived from alignment at sc0000054:630687..631085 (Clytia hemisphaerica)
atttggcaaattttcaacattctTGTATTTTTATGTCAACGCTAAAAGTT
AGTTCGTTTAGCGATGTCAAGCTCACCaattttttgtaactttttttaat
aagttgaCTAGGTTAGTTACTCTTATATCAAAGCTATGAAGTACGTTCGG
TTAGCGATGTAAAATCGCCAACTTTTTGCACGTACATACTTTTAAATTAT
ATTGCATTTTTAGCacttttctttttgtatttttatgtcAACGCTAAAAG
TTGGTTCGGTTAGCGATGTCAAGTTCATCaactttttgtaacttttttta
ataagttgaTAAGGTTAGTTATTCTTATATCAAAGCTATGAAGTACGTTC
GGTTAGCGATGTCAAGTTCATCaactttttgtaactttttttaataagt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003229XLOC_003229Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005704-exon-sc0000054-1491911889:630687..631085TCONS_00005704-exon-sc0000054-1491911889:630687..631085Clytia hemisphaericaexon
TCONS_00005704-exon-sc0000054-1510915933:630687..631085TCONS_00005704-exon-sc0000054-1510915933:630687..631085Clytia hemisphaericaexon
TCONS_00005704-exon-sc0000054-1575043694:630687..631085TCONS_00005704-exon-sc0000054-1575043694:630687..631085Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:630687..631085 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.124358	0	0.515869	0	0	0.140174	0.287347	0.793971	0	1.44429	1.84924	1.49867	2.53037	0	0.357844	0.256037	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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