TCONS_00057487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057487
Unique NameTCONS_00057487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057487 ID=TCONS_00057487|Name=TCONS_00057487|organism=Clytia hemisphaerica|type=transcript|length=2307bp
CACCCATCCCTTTtaaagcttacagtgtaagtgAGGCAGGTAAAATCAAT
CATGCTGTCTGTTTTAAggtttatctgatattccgatggcggattggctg
CCGCcaacgctaaagctctaaaggagcgggccaatttcccatcggagagg
aattaTAGTCGGCCATTGATGTGCCGCATTCCCTAGTCGGGTTTAACAGC
CCTTGCGCTTAAACCCataaatattttggttggacccgccaatccccgaa
aacgagagctgggttaccagacctcctgctgaaaaattcttgacgtggtc
tcgcaaaattccgtaatgtaaacatTCCAGACGTTGAAAaatttcccgac
cttcagagctttagcgtgtcggatgaaaatttcaccatctggatGTCAGA
TAATTTTAATGTTACACCAGCAGCATGAGTagctattttttgaaaaaaag
atttctttattaatttcttatttttaacaGTAATTATTGTACAtgcattt
ttaagaaaaaaggaAACAGTCCATATCCGTCTGAAGTACATCTATGAGTG
GCTACAGCCGTGAAAGCAGTATTATTTTGAATATGAAGTTCATCAAAATT
CAGAAGCTTTGTTATTCACACCATTCGATTCATCCATATAAGCTTTCCTC
ATTTCACTTTTCAAAGTCGCAATCACGCCATGAAGTTCCTTTTCAAGACT
TTGCAGTTTCTGATATTGCGGTAACATTTCATAGGATaaaactttctttg
tttcttgtCGCTTTCGTTTCATTTTTGACGATGAATTTCCCTTTATAAAG
ACGATAATCTCACTGAGGATTCCTATGAAAACTAAGCAACCGGCAGCGAT
GGCTGTATACAAAGCTAACCCGCCATCTTGTTTATTAAACATCTCTTCTA
TACTACGTGTATAGTAATGAACGACAACATACGGTGGGACGTATCTGGCA
ATCATACCACGTGACATTGCTACCGGTATCTCGTCGTCATCGTACTCAAT
ATCAAACCAACTATATTTTTTATGGTAGTAAATGTACGCGTATATTTGAG
CCGTGATCATATATTCGGATTCAATTTTCAAGTCCGCTGGCTTCTCAGTA
TTGAAATAGACAGAGGCTACATTAGAATCCATTAAAATTCCATCAATATC
TTTGTTTAGAAGAGCACTGTACATTTCTTCATAGCTGTTGTACTGTTTCG
GATTTCCAGACAGTTGACTGCGGACAATACTGAGTTCAGTGGAATGTCTG
AGAACACCTATATCTTTTCCGCCTGTACTGTAATCTTTTTGGACAGCCTC
CATGACGGTTGTCGTAATGATAGCCGTTAACATTAAACCGACCAACATCC
AGGCTAAACATAACAAACGACTTATAAAATGTTTTGGAACTTTATCTCCG
TAACCAACTGTTGTCATGGTAACAAAACAATACCAAAATGAAGTCCAAAG
TCCAGCACCGAATGTGTTTTGAAAATCGGGATTTGAATTTCGTTCGATAA
ACCAAATAATAGCCGCCAAATTTATCGCCACTGTGATTGAAAAAGAAACG
ACACCGAGACAGTTAGAGATTCCTTCTAAAAATCTTAACAATAATAGAAT
GTCCTCAGTTCGGACGATCAAAACAGATTTTTCGGATTTAACAACGGGCA
CTTTGATAAAAAGTGTTCCATTTTTTGATGCATCGAATGTGGTTGCAGAT
ACAATGAAAATATCGCCGGAATCTTCACTCATATTAAGTTTTTGCAATAA
ACGTGTTTTATTGGTTTCCAGaagcaaattaaaaatttcttgTTGTGTGT
CATAGTGATGTTTCGGTAGATTATGAAATTCGATTAGTTTCGATGGTTCC
TCTTTCCCTTCACAATCTGCTACTGcgactttttctttgtttaactCTTC
ATCCAAAGTTAAATGAATCAAAGACTGTGTAACACCGAAACCTTCAAATC
CTTTGACTTTTTTATCCGAATAATATGGCTTATTATTTATCCAACTTATA
AAATAAGCGTTTGTTGTTCCGTTaggaaagggtcccaaaaatgTGGTGTT
TTGGTTGGCAAAGCATGAACAAGGGTCCATATCTCCGCCCATATCTCCGC
TCATTTCCATACAATGTCTAAGCATTCCGCCCATGTCATCGTCACCGTCC
TCGCTAGCAATGGCGTGATGGCAAATCATAAATAAAAGCAGAAATCTCCT
CATATTTTGAGACTTTAGTAAGTTTACGTTAAAATGGTACCCTGTTTTTT
ACTCGCTATGAAATTTTAACTgatagaaaaactttttttatccgTCCTTT
CCCCCAA
Run BLAST on NCBI

protein sequence of TCONS_00057487-protein

>TCONS_00057487-protein ID=TCONS_00057487-protein|Name=TCONS_00057487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=536bp
MRRFLLLFMICHHAIASEDGDDDMGGMLRHCMEMSGDMGGDMDPCSCFAN
QNTTFLGPFPNGTTNAYFISWINNKPYYSDKKVKGFEGFGVTQSLIHLTL
DEELNKEKVAVADCEGKEEPSKLIEFHNLPKHHYDTQQEIFNLLLETNKT
RLLQKLNMSEDSGDIFIVSATTFDASKNGTLFIKVPVVKSEKSVLIVRTE
DILLLLRFLEGISNCLGVVSFSITVAINLAAIIWFIERNSNPDFQNTFGA
GLWTSFWYCFVTMTTVGYGDKVPKHFISRLLCLAWMLVGLMLTAIITTTV
MEAVQKDYSTGGKDIGVLRHSTELSIVRSQLSGNPKQYNSYEEMYSALLN
KDIDGILMDSNVASVYFNTEKPADLKIESEYMITAQIYAYIYYHKKYSWF
DIEYDDDEIPVAMSRGMIARYVPPYVVVHYYTRSIEEMFNKQDGGLALYT
AIAAGCLVFIGILSEIIVFIKGNSSSKMKRKRQETKKVLSYEMLPQYQKL
QSLEKELHGVIATLKSEMRKAYMDESNGVNNKASEF
Run BLAST on NCBI

transcript from alignment at scaffold_289:78523..80829

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057487 ID=TCONS_00057487|Name=TCONS_00057487|organism=Clytia hemisphaerica|type=transcript|length=2307bp|location=Sequence derived from alignment at scaffold_289:78523..80829 (Clytia hemisphaerica)
TTGGGGGAAAGGAcggataaaaaaagtttttctatcAGTTAAAATTTCAT AGCGAGTAAAAAACAGGGTACCATTTTAACGTAAACTTACTAAAGTCTCA AAATATGAGGAGATTTCTGCTTTTATTTATGATTTGCCATCACGCCATTG CTAGCGAGGACGGTGACGATGACATGGGCGGAATGCTTAGACATTGTATG GAAATGAGCGGAGATATGGGCGGAGATATGGACCCTTGTTCATGCTTTGC CAACCAAAACACCAcatttttgggaccctttcctAACGGAACAACAAACG CTTATTTTATAAGTTGGATAAATAATAAGCCATATTATTCGGATAAAAAA GTCAAAGGATTTGAAGGTTTCGGTGTTACACAGTCTTTGATTCATTTAAC TTTGGATGAAGagttaaacaaagaaaaagtcgCAGTAGCAGATTGTGAAG GGAAAGAGGAACCATCGAAACTAATCGAATTTCATAATCTACCGAAACAT CACTATGACACACAAcaagaaatttttaatttgcttCTGGAAACCAATAA AACACGTTTATTGCAAAAACTTAATATGAGTGAAGATTCCGGCGATATTT TCATTGTATCTGCAACCACATTCGATGCATCAAAAAATGGAACACTTTTT ATCAAAGTGCCCGTTGTTAAATCCGAAAAATCTGTTTTGATCGTCCGAAC TGAGGACATTCTATTATTGTTAAGATTTTTAGAAGGAATCTCTAACTGTC TCGGTGTCGTTTCTTTTTCAATCACAGTGGCGATAAATTTGGCGGCTATT ATTTGGTTTATCGAACGAAATTCAAATCCCGATTTTCAAAACACATTCGG TGCTGGACTTTGGACTTCATTTTGGTATTGTTTTGTTACCATGACAACAG TTGGTTACGGAGATAAAGTTCCAAAACATTTTATAAGTCGTTTGTTATGT TTAGCCTGGATGTTGGTCGGTTTAATGTTAACGGCTATCATTACGACAAC CGTCATGGAGGCTGTCCAAAAAGATTACAGTACAGGCGGAAAAGATATAG GTGTTCTCAGACATTCCACTGAACTCAGTATTGTCCGCAGTCAACTGTCT GGAAATCCGAAACAGTACAACAGCTATGAAGAAATGTACAGTGCTCTTCT AAACAAAGATATTGATGGAATTTTAATGGATTCTAATGTAGCCTCTGTCT ATTTCAATACTGAGAAGCCAGCGGACTTGAAAATTGAATCCGAATATATG ATCACGGCTCAAATATACGCGTACATTTACTACCATAAAAAATATAGTTG GTTTGATATTGAGTACGATGACGACGAGATACCGGTAGCAATGTCACGTG GTATGATTGCCAGATACGTCCCACCGTATGTTGTCGTTCATTACTATACA CGTAGTATAGAAGAGATGTTTAATAAACAAGATGGCGGGTTAGCTTTGTA TACAGCCATCGCTGCCGGTTGCTTAGTTTTCATAGGAATCCTCAGTGAGA TTATCGTCTTTATAAAGGGAAATTCATCGTCAAAAATGAAACGAAAGCGa caagaaacaaagaaagttttATCCTATGAAATGTTACCGCAATATCAGAA ACTGCAAAGTCTTGAAAAGGAACTTCATGGCGTGATTGCGACTTTGAAAA GTGAAATGAGGAAAGCTTATATGGATGAATCGAATGGTGTGAATAACAAA GCTTCTGAATTTTGATGAACTTCATATTCAAAATAATACTGCTTTCACGG CTGTAGCCACTCATAGATGTACTTCAGACGGATATGGACTGTTtcctttt ttcttaaaaatgcaTGTACAATAATTACtgttaaaaataagaaattaata aagaaatctttttttcaaaaaatagctACTCATGCTGCTGGTGTAACATT AAAATTATCTGACatccagatggtgaaattttcatccgacacgctaaagc tctgaaggtcgggaaattTTTCAACGTCTGGAatgtttacattacggaat tttgcgagaccacgtcaagaatttttcagcaggaggtctggtaacccagc tctcgttttcggggattggcgggtccaaccaaaatatttatGGGTTTAAG CGCAAGGGCTGTTAAACCCGACTAGGGAATGCGGCACATCAATGGCCGAC TAtaattcctctccgatgggaaattggcccgctcctttagagctttagcg ttgGCGGcagccaatccgccatcggaatatcagataaaccTTAAAACAGA CAGCATGATTGATTTTACCTGCCTcacttacactgtaagctttaAAAGGG ATGGGTG

Coding sequence (CDS) from alignment at scaffold_289:78523..80829

>TCONS_00057487 ID=TCONS_00057487|Name=TCONS_00057487|organism=Clytia hemisphaerica|type=CDS|length=1611bp|location=Sequence derived from alignment at scaffold_289:78523..80829 (Clytia hemisphaerica)
ATGAGGAGATTTCTGCTTTTATTTATGATTTGCCATCACGCCATTGCTAG
CGAGGACGGTGACGATGACATGGGCGGAATGCTTAGACATTGTATGGAAA
TGAGCGGAGATATGGGCGGAGATATGGACCCTTGTTCATGCTTTGCCAAC
CAAAACACCAcatttttgggaccctttcctAACGGAACAACAAACGCTTA
TTTTATAAGTTGGATAAATAATAAGCCATATTATTCGGATAAAAAAGTCA
AAGGATTTGAAGGTTTCGGTGTTACACAGTCTTTGATTCATTTAACTTTG
GATGAAGagttaaacaaagaaaaagtcgCAGTAGCAGATTGTGAAGGGAA
AGAGGAACCATCGAAACTAATCGAATTTCATAATCTACCGAAACATCACT
ATGACACACAAcaagaaatttttaatttgcttCTGGAAACCAATAAAACA
CGTTTATTGCAAAAACTTAATATGAGTGAAGATTCCGGCGATATTTTCAT
TGTATCTGCAACCACATTCGATGCATCAAAAAATGGAACACTTTTTATCA
AAGTGCCCGTTGTTAAATCCGAAAAATCTGTTTTGATCGTCCGAACTGAG
GACATTCTATTATTGTTAAGATTTTTAGAAGGAATCTCTAACTGTCTCGG
TGTCGTTTCTTTTTCAATCACAGTGGCGATAAATTTGGCGGCTATTATTT
GGTTTATCGAACGAAATTCAAATCCCGATTTTCAAAACACATTCGGTGCT
GGACTTTGGACTTCATTTTGGTATTGTTTTGTTACCATGACAACAGTTGG
TTACGGAGATAAAGTTCCAAAACATTTTATAAGTCGTTTGTTATGTTTAG
CCTGGATGTTGGTCGGTTTAATGTTAACGGCTATCATTACGACAACCGTC
ATGGAGGCTGTCCAAAAAGATTACAGTACAGGCGGAAAAGATATAGGTGT
TCTCAGACATTCCACTGAACTCAGTATTGTCCGCAGTCAACTGTCTGGAA
ATCCGAAACAGTACAACAGCTATGAAGAAATGTACAGTGCTCTTCTAAAC
AAAGATATTGATGGAATTTTAATGGATTCTAATGTAGCCTCTGTCTATTT
CAATACTGAGAAGCCAGCGGACTTGAAAATTGAATCCGAATATATGATCA
CGGCTCAAATATACGCGTACATTTACTACCATAAAAAATATAGTTGGTTT
GATATTGAGTACGATGACGACGAGATACCGGTAGCAATGTCACGTGGTAT
GATTGCCAGATACGTCCCACCGTATGTTGTCGTTCATTACTATACACGTA
GTATAGAAGAGATGTTTAATAAACAAGATGGCGGGTTAGCTTTGTATACA
GCCATCGCTGCCGGTTGCTTAGTTTTCATAGGAATCCTCAGTGAGATTAT
CGTCTTTATAAAGGGAAATTCATCGTCAAAAATGAAACGAAAGCGacaag
aaacaaagaaagttttATCCTATGAAATGTTACCGCAATATCAGAAACTG
CAAAGTCTTGAAAAGGAACTTCATGGCGTGATTGCGACTTTGAAAAGTGA
AATGAGGAAAGCTTATATGGATGAATCGAATGGTGTGAATAACAAAGCTT
CTGAATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036228XLOC_036228Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057487-proteinTCONS_00057487-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057487-exon-scaffold_289-1491911889:78523..80829TCONS_00057487-exon-scaffold_289-1491911889:78523..80829Clytia hemisphaericaexon
TCONS_00057487-exon-scaffold_289-1510915933:78523..80829TCONS_00057487-exon-scaffold_289-1510915933:78523..80829Clytia hemisphaericaexon
TCONS_00057487-exon-scaffold_289-1575043694:78523..80829TCONS_00057487-exon-scaffold_289-1575043694:78523..80829Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:78523..80829 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (4.92757 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0879364 0.0362853 0.139029 0.27497 0.0912178 0.240563 0.565261 0.488484 0.913765 0.83112 0.422783 0.767911 2.57692 2.43385 0.511947 0.633486 0.820908 1.15972 4.61983 4.92757 1.55931 1.58258 0.388728 0.423822 0.499838 0.718833 0.255745 0.0812079 0 0.0766812
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR001638Solute-binding_3/MltF_N
IPR013099K_chnl_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0004970 ionotropic glutamate receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600180020002200Sequence
Match NameE-valueIdentityDescription
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