Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057487 ID=TCONS_00057487|Name=TCONS_00057487|organism=Clytia hemisphaerica|type=transcript|length=2307bp CACCCATCCCTTTtaaagcttacagtgtaagtgAGGCAGGTAAAATCAAT CATGCTGTCTGTTTTAAggtttatctgatattccgatggcggattggctg CCGCcaacgctaaagctctaaaggagcgggccaatttcccatcggagagg aattaTAGTCGGCCATTGATGTGCCGCATTCCCTAGTCGGGTTTAACAGC CCTTGCGCTTAAACCCataaatattttggttggacccgccaatccccgaa aacgagagctgggttaccagacctcctgctgaaaaattcttgacgtggtc tcgcaaaattccgtaatgtaaacatTCCAGACGTTGAAAaatttcccgac cttcagagctttagcgtgtcggatgaaaatttcaccatctggatGTCAGA TAATTTTAATGTTACACCAGCAGCATGAGTagctattttttgaaaaaaag atttctttattaatttcttatttttaacaGTAATTATTGTACAtgcattt ttaagaaaaaaggaAACAGTCCATATCCGTCTGAAGTACATCTATGAGTG GCTACAGCCGTGAAAGCAGTATTATTTTGAATATGAAGTTCATCAAAATT CAGAAGCTTTGTTATTCACACCATTCGATTCATCCATATAAGCTTTCCTC ATTTCACTTTTCAAAGTCGCAATCACGCCATGAAGTTCCTTTTCAAGACT TTGCAGTTTCTGATATTGCGGTAACATTTCATAGGATaaaactttctttg tttcttgtCGCTTTCGTTTCATTTTTGACGATGAATTTCCCTTTATAAAG ACGATAATCTCACTGAGGATTCCTATGAAAACTAAGCAACCGGCAGCGAT GGCTGTATACAAAGCTAACCCGCCATCTTGTTTATTAAACATCTCTTCTA TACTACGTGTATAGTAATGAACGACAACATACGGTGGGACGTATCTGGCA ATCATACCACGTGACATTGCTACCGGTATCTCGTCGTCATCGTACTCAAT ATCAAACCAACTATATTTTTTATGGTAGTAAATGTACGCGTATATTTGAG CCGTGATCATATATTCGGATTCAATTTTCAAGTCCGCTGGCTTCTCAGTA TTGAAATAGACAGAGGCTACATTAGAATCCATTAAAATTCCATCAATATC TTTGTTTAGAAGAGCACTGTACATTTCTTCATAGCTGTTGTACTGTTTCG GATTTCCAGACAGTTGACTGCGGACAATACTGAGTTCAGTGGAATGTCTG AGAACACCTATATCTTTTCCGCCTGTACTGTAATCTTTTTGGACAGCCTC CATGACGGTTGTCGTAATGATAGCCGTTAACATTAAACCGACCAACATCC AGGCTAAACATAACAAACGACTTATAAAATGTTTTGGAACTTTATCTCCG TAACCAACTGTTGTCATGGTAACAAAACAATACCAAAATGAAGTCCAAAG TCCAGCACCGAATGTGTTTTGAAAATCGGGATTTGAATTTCGTTCGATAA ACCAAATAATAGCCGCCAAATTTATCGCCACTGTGATTGAAAAAGAAACG ACACCGAGACAGTTAGAGATTCCTTCTAAAAATCTTAACAATAATAGAAT GTCCTCAGTTCGGACGATCAAAACAGATTTTTCGGATTTAACAACGGGCA CTTTGATAAAAAGTGTTCCATTTTTTGATGCATCGAATGTGGTTGCAGAT ACAATGAAAATATCGCCGGAATCTTCACTCATATTAAGTTTTTGCAATAA ACGTGTTTTATTGGTTTCCAGaagcaaattaaaaatttcttgTTGTGTGT CATAGTGATGTTTCGGTAGATTATGAAATTCGATTAGTTTCGATGGTTCC TCTTTCCCTTCACAATCTGCTACTGcgactttttctttgtttaactCTTC ATCCAAAGTTAAATGAATCAAAGACTGTGTAACACCGAAACCTTCAAATC CTTTGACTTTTTTATCCGAATAATATGGCTTATTATTTATCCAACTTATA AAATAAGCGTTTGTTGTTCCGTTaggaaagggtcccaaaaatgTGGTGTT TTGGTTGGCAAAGCATGAACAAGGGTCCATATCTCCGCCCATATCTCCGC TCATTTCCATACAATGTCTAAGCATTCCGCCCATGTCATCGTCACCGTCC TCGCTAGCAATGGCGTGATGGCAAATCATAAATAAAAGCAGAAATCTCCT CATATTTTGAGACTTTAGTAAGTTTACGTTAAAATGGTACCCTGTTTTTT ACTCGCTATGAAATTTTAACTgatagaaaaactttttttatccgTCCTTT CCCCCAA Run BLAST on NCBI protein sequence of TCONS_00057487-protein >TCONS_00057487-protein ID=TCONS_00057487-protein|Name=TCONS_00057487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=536bp
MRRFLLLFMICHHAIASEDGDDDMGGMLRHCMEMSGDMGGDMDPCSCFAN QNTTFLGPFPNGTTNAYFISWINNKPYYSDKKVKGFEGFGVTQSLIHLTL DEELNKEKVAVADCEGKEEPSKLIEFHNLPKHHYDTQQEIFNLLLETNKT RLLQKLNMSEDSGDIFIVSATTFDASKNGTLFIKVPVVKSEKSVLIVRTE DILLLLRFLEGISNCLGVVSFSITVAINLAAIIWFIERNSNPDFQNTFGA GLWTSFWYCFVTMTTVGYGDKVPKHFISRLLCLAWMLVGLMLTAIITTTV MEAVQKDYSTGGKDIGVLRHSTELSIVRSQLSGNPKQYNSYEEMYSALLN KDIDGILMDSNVASVYFNTEKPADLKIESEYMITAQIYAYIYYHKKYSWF DIEYDDDEIPVAMSRGMIARYVPPYVVVHYYTRSIEEMFNKQDGGLALYT AIAAGCLVFIGILSEIIVFIKGNSSSKMKRKRQETKKVLSYEMLPQYQKL QSLEKELHGVIATLKSEMRKAYMDESNGVNNKASEF Run BLAST on NCBI transcript from alignment at scaffold_289:78523..80829 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057487 ID=TCONS_00057487|Name=TCONS_00057487|organism=Clytia hemisphaerica|type=transcript|length=2307bp|location=Sequence derived from alignment at scaffold_289:78523..80829 (Clytia hemisphaerica) TTGGGGGAAAGGAcggataaaaaaagtttttctatcAGTTAAAATTTCAT
AGCGAGTAAAAAACAGGGTACCATTTTAACGTAAACTTACTAAAGTCTCA
AAATATGAGGAGATTTCTGCTTTTATTTATGATTTGCCATCACGCCATTG
CTAGCGAGGACGGTGACGATGACATGGGCGGAATGCTTAGACATTGTATG
GAAATGAGCGGAGATATGGGCGGAGATATGGACCCTTGTTCATGCTTTGC
CAACCAAAACACCAcatttttgggaccctttcctAACGGAACAACAAACG
CTTATTTTATAAGTTGGATAAATAATAAGCCATATTATTCGGATAAAAAA
GTCAAAGGATTTGAAGGTTTCGGTGTTACACAGTCTTTGATTCATTTAAC
TTTGGATGAAGagttaaacaaagaaaaagtcgCAGTAGCAGATTGTGAAG
GGAAAGAGGAACCATCGAAACTAATCGAATTTCATAATCTACCGAAACAT
CACTATGACACACAAcaagaaatttttaatttgcttCTGGAAACCAATAA
AACACGTTTATTGCAAAAACTTAATATGAGTGAAGATTCCGGCGATATTT
TCATTGTATCTGCAACCACATTCGATGCATCAAAAAATGGAACACTTTTT
ATCAAAGTGCCCGTTGTTAAATCCGAAAAATCTGTTTTGATCGTCCGAAC
TGAGGACATTCTATTATTGTTAAGATTTTTAGAAGGAATCTCTAACTGTC
TCGGTGTCGTTTCTTTTTCAATCACAGTGGCGATAAATTTGGCGGCTATT
ATTTGGTTTATCGAACGAAATTCAAATCCCGATTTTCAAAACACATTCGG
TGCTGGACTTTGGACTTCATTTTGGTATTGTTTTGTTACCATGACAACAG
TTGGTTACGGAGATAAAGTTCCAAAACATTTTATAAGTCGTTTGTTATGT
TTAGCCTGGATGTTGGTCGGTTTAATGTTAACGGCTATCATTACGACAAC
CGTCATGGAGGCTGTCCAAAAAGATTACAGTACAGGCGGAAAAGATATAG
GTGTTCTCAGACATTCCACTGAACTCAGTATTGTCCGCAGTCAACTGTCT
GGAAATCCGAAACAGTACAACAGCTATGAAGAAATGTACAGTGCTCTTCT
AAACAAAGATATTGATGGAATTTTAATGGATTCTAATGTAGCCTCTGTCT
ATTTCAATACTGAGAAGCCAGCGGACTTGAAAATTGAATCCGAATATATG
ATCACGGCTCAAATATACGCGTACATTTACTACCATAAAAAATATAGTTG
GTTTGATATTGAGTACGATGACGACGAGATACCGGTAGCAATGTCACGTG
GTATGATTGCCAGATACGTCCCACCGTATGTTGTCGTTCATTACTATACA
CGTAGTATAGAAGAGATGTTTAATAAACAAGATGGCGGGTTAGCTTTGTA
TACAGCCATCGCTGCCGGTTGCTTAGTTTTCATAGGAATCCTCAGTGAGA
TTATCGTCTTTATAAAGGGAAATTCATCGTCAAAAATGAAACGAAAGCGa
caagaaacaaagaaagttttATCCTATGAAATGTTACCGCAATATCAGAA
ACTGCAAAGTCTTGAAAAGGAACTTCATGGCGTGATTGCGACTTTGAAAA
GTGAAATGAGGAAAGCTTATATGGATGAATCGAATGGTGTGAATAACAAA
GCTTCTGAATTTTGATGAACTTCATATTCAAAATAATACTGCTTTCACGG
CTGTAGCCACTCATAGATGTACTTCAGACGGATATGGACTGTTtcctttt
ttcttaaaaatgcaTGTACAATAATTACtgttaaaaataagaaattaata
aagaaatctttttttcaaaaaatagctACTCATGCTGCTGGTGTAACATT
AAAATTATCTGACatccagatggtgaaattttcatccgacacgctaaagc
tctgaaggtcgggaaattTTTCAACGTCTGGAatgtttacattacggaat
tttgcgagaccacgtcaagaatttttcagcaggaggtctggtaacccagc
tctcgttttcggggattggcgggtccaaccaaaatatttatGGGTTTAAG
CGCAAGGGCTGTTAAACCCGACTAGGGAATGCGGCACATCAATGGCCGAC
TAtaattcctctccgatgggaaattggcccgctcctttagagctttagcg
ttgGCGGcagccaatccgccatcggaatatcagataaaccTTAAAACAGA
CAGCATGATTGATTTTACCTGCCTcacttacactgtaagctttaAAAGGG
ATGGGTG Coding sequence (CDS) from alignment at scaffold_289:78523..80829 >TCONS_00057487 ID=TCONS_00057487|Name=TCONS_00057487|organism=Clytia hemisphaerica|type=CDS|length=1611bp|location=Sequence derived from alignment at scaffold_289:78523..80829 (Clytia hemisphaerica) ATGAGGAGATTTCTGCTTTTATTTATGATTTGCCATCACGCCATTGCTAG CGAGGACGGTGACGATGACATGGGCGGAATGCTTAGACATTGTATGGAAA TGAGCGGAGATATGGGCGGAGATATGGACCCTTGTTCATGCTTTGCCAAC CAAAACACCAcatttttgggaccctttcctAACGGAACAACAAACGCTTA TTTTATAAGTTGGATAAATAATAAGCCATATTATTCGGATAAAAAAGTCA AAGGATTTGAAGGTTTCGGTGTTACACAGTCTTTGATTCATTTAACTTTG GATGAAGagttaaacaaagaaaaagtcgCAGTAGCAGATTGTGAAGGGAA AGAGGAACCATCGAAACTAATCGAATTTCATAATCTACCGAAACATCACT ATGACACACAAcaagaaatttttaatttgcttCTGGAAACCAATAAAACA CGTTTATTGCAAAAACTTAATATGAGTGAAGATTCCGGCGATATTTTCAT TGTATCTGCAACCACATTCGATGCATCAAAAAATGGAACACTTTTTATCA AAGTGCCCGTTGTTAAATCCGAAAAATCTGTTTTGATCGTCCGAACTGAG GACATTCTATTATTGTTAAGATTTTTAGAAGGAATCTCTAACTGTCTCGG TGTCGTTTCTTTTTCAATCACAGTGGCGATAAATTTGGCGGCTATTATTT GGTTTATCGAACGAAATTCAAATCCCGATTTTCAAAACACATTCGGTGCT GGACTTTGGACTTCATTTTGGTATTGTTTTGTTACCATGACAACAGTTGG TTACGGAGATAAAGTTCCAAAACATTTTATAAGTCGTTTGTTATGTTTAG CCTGGATGTTGGTCGGTTTAATGTTAACGGCTATCATTACGACAACCGTC ATGGAGGCTGTCCAAAAAGATTACAGTACAGGCGGAAAAGATATAGGTGT TCTCAGACATTCCACTGAACTCAGTATTGTCCGCAGTCAACTGTCTGGAA ATCCGAAACAGTACAACAGCTATGAAGAAATGTACAGTGCTCTTCTAAAC AAAGATATTGATGGAATTTTAATGGATTCTAATGTAGCCTCTGTCTATTT CAATACTGAGAAGCCAGCGGACTTGAAAATTGAATCCGAATATATGATCA CGGCTCAAATATACGCGTACATTTACTACCATAAAAAATATAGTTGGTTT GATATTGAGTACGATGACGACGAGATACCGGTAGCAATGTCACGTGGTAT GATTGCCAGATACGTCCCACCGTATGTTGTCGTTCATTACTATACACGTA GTATAGAAGAGATGTTTAATAAACAAGATGGCGGGTTAGCTTTGTATACA GCCATCGCTGCCGGTTGCTTAGTTTTCATAGGAATCCTCAGTGAGATTAT CGTCTTTATAAAGGGAAATTCATCGTCAAAAATGAAACGAAAGCGacaag aaacaaagaaagttttATCCTATGAAATGTTACCGCAATATCAGAAACTG CAAAGTCTTGAAAAGGAACTTCATGGCGTGATTGCGACTTTGAAAAGTGA AATGAGGAAAGCTTATATGGATGAATCGAATGGTGTGAATAACAAAGCTT CTGAATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057487-exon-scaffold_289-1491911889:78523..80829 | TCONS_00057487-exon-scaffold_289-1491911889:78523..80829 | Clytia hemisphaerica | exon |
TCONS_00057487-exon-scaffold_289-1510915933:78523..80829 | TCONS_00057487-exon-scaffold_289-1510915933:78523..80829 | Clytia hemisphaerica | exon |
TCONS_00057487-exon-scaffold_289-1575043694:78523..80829 | TCONS_00057487-exon-scaffold_289-1575043694:78523..80829 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_289 | supercontig | scaffold_289:78523..80829 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0004970 | ionotropic glutamate receptor activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0016020 |
membrane |
molecular_function |
GO:0004970 |
ionotropic glutamate receptor activity |
Blast
The following BLAST results are available for this feature:
|