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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057551 ID=TCONS_00057551|Name=TCONS_00057551|organism=Clytia hemisphaerica|type=transcript|length=844bp
aatttcaaaatgaatttctTGTGTATTTGATtcatttattttagatttat
taTGACATGTTTCAATATTAACAGactttgtattcttatcattaTTGCTG
GTTTTCTctacacaaattttttttttctttaatttcacTTCGCATAGCTT
TTCTACGTTTCCTCTTTGTTGTAATCGATTCATTTTCAATAGGTGGTAAA
AAGGCGACATTATACATACTACATTCTCCCTGTAAAAGTTTATCAGCTTT
GTCTCGACAATGTTTCTCTTTGCCTGTATATGTTGTATTTTTCTCTCCCT
TAGACAATGTTAGAGATGAAAAAATGTGTGGTTTGACAATactattttct
tttgaattaaggGTTGATGAATTTCGATTGGGTGTTGCCCcttctttttt
gtttgattttctatAGATTAACAAATATGGAACAATCTGATCATTGACTT
TGCAATTGAAATTGGGATCTGGAATAGTTGACACTTTTGCATCGTTGACA
AAATACCATATGTTCCCATAGTTAACAGCAGCAGTATAGTGACCTGTGTT
AGGAGTATCACCATGATGGTAAATAACTGCTTGCAAGTTTAGATTCCCTA
GCaatgtattttcaaaataagtttCAATATTAAAgttgggaactaatttt
cttgaagTGTTTGAAGCATaatcatagcaaaatatttttagtgaGACAAT
CAAATATTCAGATATGTTGATAATAGTTTTACTTTTTGTGGCCTGTGTGT
GGCATGGGCAATTTGCACAATCATACAAGTCATGGAGCAATTCTCCATGT
GGATCGTTTACTAGTCtcgaaatttcattttttatagaaTAATG Run BLAST on NCBI protein sequence of TCONS_00057551-protein >TCONS_00057551-protein ID=TCONS_00057551-protein|Name=TCONS_00057551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
HYSIKNEISRLVNDPHGELLHDLYDCANCPCHTQATKSKTIINISEYLIV
SLKIFCYDYASNTSRKLVPNFNIETYFENTLLGNLNLQAVIYHHGDTPNT
GHYTAAVNYGNIWYFVNDAKVSTIPDPNFNCKVNDQIVPYLLIYRKSNKK
EGATPNRNSSTLNSKENSIVKPHIFSSLTLSKGEKNTTYTGKEKHCRDKA
DKLLQGECSMYNVAFLPPIENESITTKRKRRKAMRSEIKEKKNLCRENQQ Run BLAST on NCBI transcript from alignment at scaffold_292:11283..12126 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057551 ID=TCONS_00057551|Name=TCONS_00057551|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at scaffold_292:11283..12126 (Clytia hemisphaerica)
CATTAttctataaaaaatgaaatttcgaGACTAGTAAACGATCCACATGG
AGAATTGCTCCATGACTTGTATGATTGTGCAAATTGCCCATGCCACACAC
AGGCCACAAAAAGTAAAACTATTATCAACATATCTGAATATTTGATTGTC
tcactaaaaatattttgctatgattATGCTTCAAACActtcaagaaaatt
agttcccaacTTTAATATTGaaacttattttgaaaatacattGCTAGGGA
ATCTAAACTTGCAAGCAGTTATTTACCATCATGGTGATACTCCTAACACA
GGTCACTATACTGCTGCTGTTAACTATGGGAACATATGGTATTTTGTCAA
CGATGCAAAAGTGTCAACTATTCCAGATCCCAATTTCAATTGCAAAGTCA
ATGATCAGATTGTTCCATATTTGTTAATCTatagaaaatcaaacaaaaaa
gaagGGGCAACACCCAATCGAAATTCATCAACccttaattcaaaagaaaa
tagtATTGTCAAACCACACATTTTTTCATCTCTAACATTGTCTAAGGGAG
AGAAAAATACAACATATACAGGCAAAGAGAAACATTGTCGAGACAAAGCT
GATAAACTTTTACAGGGAGAATGTAGTATGTATAATGTCGCCTTTTTACC
ACCTATTGAAAATGAATCGATTACAACAAAGAGGAAACGTAGAAAAGCTA
TGCGAAgtgaaattaaagaaaaaaaaaatttgtgtagAGAAAACCAGCAA
taatgataagaatacaaagtCTGTTAATATTGAAACATGTCAtaataaat
ctaaaataaatgaATCAAATACACAagaaattcattttgaaatt Coding sequence (CDS) from alignment at scaffold_292:11283..12126 >TCONS_00057551 ID=TCONS_00057551|Name=TCONS_00057551|organism=Clytia hemisphaerica|type=CDS|length=753bp|location=Sequence derived from alignment at scaffold_292:11283..12126 (Clytia hemisphaerica)
CATTAttctataaaaaatgaaatttcgaGACTAGTAAACGATCCACATGG
AGAATTGCTCCATGACTTGTATGATTGTGCAAATTGCCCATGCCACACAC
AGGCCACAAAAAGTAAAACTATTATCAACATATCTGAATATTTGATTGTC
tcactaaaaatattttgctatgattATGCTTCAAACActtcaagaaaatt
agttcccaacTTTAATATTGaaacttattttgaaaatacattGCTAGGGA
ATCTAAACTTGCAAGCAGTTATTTACCATCATGGTGATACTCCTAACACA
GGTCACTATACTGCTGCTGTTAACTATGGGAACATATGGTATTTTGTCAA
CGATGCAAAAGTGTCAACTATTCCAGATCCCAATTTCAATTGCAAAGTCA
ATGATCAGATTGTTCCATATTTGTTAATCTatagaaaatcaaacaaaaaa
gaagGGGCAACACCCAATCGAAATTCATCAACccttaattcaaaagaaaa
tagtATTGTCAAACCACACATTTTTTCATCTCTAACATTGTCTAAGGGAG
AGAAAAATACAACATATACAGGCAAAGAGAAACATTGTCGAGACAAAGCT
GATAAACTTTTACAGGGAGAATGTAGTATGTATAATGTCGCCTTTTTACC
ACCTATTGAAAATGAATCGATTACAACAAAGAGGAAACGTAGAAAAGCTA
TGCGAAgtgaaattaaagaaaaaaaaaatttgtgtagAGAAAACCAGCAA
taa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057551-exon-scaffold_292-1491911889:11283..12126 | TCONS_00057551-exon-scaffold_292-1491911889:11283..12126 | Clytia hemisphaerica | exon |
| TCONS_00057551-exon-scaffold_292-1510915933:11283..12126 | TCONS_00057551-exon-scaffold_292-1510915933:11283..12126 | Clytia hemisphaerica | exon |
| TCONS_00057551-exon-scaffold_292-1575043694:11283..12126 | TCONS_00057551-exon-scaffold_292-1575043694:11283..12126 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_292 | supercontig | scaffold_292:11283..12126 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR028889 | USP_dom |
Blast
The following BLAST results are available for this feature:
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