TCONS_00057706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057706
Unique NameTCONS_00057706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057706 ID=TCONS_00057706|Name=TCONS_00057706|organism=Clytia hemisphaerica|type=transcript|length=1623bp
aaaatGAACTTGATAAGCTCCTATTCTTAAAGCTTCCAAGACAAGCACCT
TGCTTCTATAAGGATTCATTCTAATATCACCTTTATTTATTCCTCAGAAA
AAATGGACATGAAAatcaagaaacaaaaaaaaattgaaaaagccaCGAAT
TGACAATGTTTTTCGAAGTTTTGGGCGCCTTTTCAGGCGTGGTGAAGGCG
TTTAGCATAGAAGATTTCGGTGAATTCTTggaatcaatttcagaattctt
tTCAACATTAAATTCTTACTTACCACAAAACCGAGTTATTCGTTTTGTAT
TTTATGGTTCTGGTGTGGTTGGATTGATGAGTTTAGCGCCGTATGTTTTG
AGACATACCGAATGGATGGATTATCATTATCGACATTTGAGTTATTTTCA
TCGCTACTGTCCACTTATCGACGAACAAAAACGCTTGATATTTGATAACA
TGATTCAAAGCTATGACGAGTTACCAAAATACAAGGATAAATTCTTGGTG
GTGGAGATCCAAGCTGGAGGTGGGTCAAACTTATTATATTATCCAGAGAA
TACAAGACTTATAGCTGTCGACCACGATGAAAAATATAAGGATCAAATGA
GTTTGAATTTTCCTGACGATGAAGATGAGAGATTAATGAAAAACGTGAAT
TTAGAACGTTTTATTTGTTCACATCCGGAACAATTGATTGGTGTTCCTGA
TGGAACAATAAGTGCTATCGTGTCTGTTCACTCCTTGTGTTATCCGATGA
ACTTAGATCATTGTTTTGAAGAATTTAAACGTGTCTTGATGCCTGGTGGA
CGGATATACTTCATTGAGCATGCGCAAGAAACGAATTTCTTCTCATGGGC
TTATTTCAATCAACTGAGATTTGTATTTGTTTTCGCGCTGGTTAGATGCC
ACGTGAGGCGTGATGTTGAGAAATTTTTGAGGAGAGCGAATTTCTCGTTT
TTAAAGATTGATCAATTTTGTTTGGATACTGAGGAGATTGCAACGAGACC
TTTACAGGTATTAGCACCTCACATCTATGGATATGCTATCAAATAAATTG
ATCATATAATGTTTTTTAACACGaagatattcgacaagaaaaataaaatt
ggatatcaaaaaatattcagtcgagcttgatgGATATCAGCATGCGAGAT
CAACACAAAACAACTTATCTGCTTCATACTAGATACTATCTTCCATAGGT
ATCGCAACGAGTTTTCCTTTTCGTGAACCTGTATTATCGTCACAATACAT
AGAGTAGGGGGAcatttgttcgattttttcgaaaaaagatgGAACCAATG
TTATTTtcattcccctaccccttaccgttcaaaaaatgtataacaagtgc
ttttaaaaaagtcgagcgattttacaaatttccccctactgaTATAGGTT
ATTACATTTTACACatttaaaagaatatattttgtataaatttagatttt
tgtatACAGTATCCTCTTTTGTACCAtacaaattatgaaaattttcattt
agagATACCATTACTCTCTGacatttatatttttcatatttatatTTGAT
GAATTAAAATTACCCGTTTTCGTTGTCATGAATGTCGACCGGCTCATCAT
TCAAAGCACATATAAAGAAGGAC
Run BLAST on NCBI

protein sequence of TCONS_00057706-protein

>TCONS_00057706-protein ID=TCONS_00057706-protein|Name=TCONS_00057706-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MFFEVLGAFSGVVKAFSIEDFGEFLESISEFFSTLNSYLPQNRVIRFVFY
GSGVVGLMSLAPYVLRHTEWMDYHYRHLSYFHRYCPLIDEQKRLIFDNMI
QSYDELPKYKDKFLVVEIQAGGGSNLLYYPENTRLIAVDHDEKYKDQMSL
NFPDDEDERLMKNVNLERFICSHPEQLIGVPDGTISAIVSVHSLCYPMNL
DHCFEEFKRVLMPGGRIYFIEHAQETNFFSWAYFNQLRFVFVFALVRCHV
RRDVEKFLRRANFSFLKIDQFCLDTEEIATRPLQVLAPHIYGYAIK
Run BLAST on NCBI

transcript from alignment at scaffold_297:21220..22842

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057706 ID=TCONS_00057706|Name=TCONS_00057706|organism=Clytia hemisphaerica|type=transcript|length=1623bp|location=Sequence derived from alignment at scaffold_297:21220..22842 (Clytia hemisphaerica)
GTCCTTCTTTATATGTGCTTTGAATGATGAGCCGGTCGACATTCATGACA
ACGAAAACGGGTAATTTTAATTCATCAAatataaatatgaaaaatataaa
tgtCAGAGAGTAATGGTATctctaaatgaaaattttcataatttgtaTGG
TACAAAAGAGGATACTGTatacaaaaatctaaatttatacaaaatatatt
cttttaaatGTGTAAAATGTAATAACCTATAtcagtagggggaaatttgt
aaaatcgctcgacttttttaaaagcacttgttatacattttttgaacggt
aaggggtaggggaatgaAAATAACATTGGTTCcatcttttttcgaaaaaa
tcgaacaaatgTCCCCCTACTCTATGTATTGTGACGATAATACAGGTTCA
CGAAAAGGAAAACTCGTTGCGATACCTATGGAAGATAGTATCTAGTATGA
AGCAGATAAGTTGTTTTGTGTTGATCTCGCATGCTGATATCcatcaagct
cgactgaatattttttgatatccaattttatttttcttgtcgaatatctt
CGTGTTAAAAAACATTATATGATCAATTTATTTGATAGCATATCCATAGA
TGTGAGGTGCTAATACCTGTAAAGGTCTCGTTGCAATCTCCTCAGTATCC
AAACAAAATTGATCAATCTTTAAAAACGAGAAATTCGCTCTCCTCAAAAA
TTTCTCAACATCACGCCTCACGTGGCATCTAACCAGCGCGAAAACAAATA
CAAATCTCAGTTGATTGAAATAAGCCCATGAGAAGAAATTCGTTTCTTGC
GCATGCTCAATGAAGTATATCCGTCCACCAGGCATCAAGACACGTTTAAA
TTCTTCAAAACAATGATCTAAGTTCATCGGATAACACAAGGAGTGAACAG
ACACGATAGCACTTATTGTTCCATCAGGAACACCAATCAATTGTTCCGGA
TGTGAACAAATAAAACGTTCTAAATTCACGTTTTTCATTAATCTCTCATC
TTCATCGTCAGGAAAATTCAAACTCATTTGATCCTTATATTTTTCATCGT
GGTCGACAGCTATAAGTCTTGTATTCTCTGGATAATATAATAAGTTTGAC
CCACCTCCAGCTTGGATCTCCACCACCAAGAATTTATCCTTGTATTTTGG
TAACTCGTCATAGCTTTGAATCATGTTATCAAATATCAAGCGTTTTTGTT
CGTCGATAAGTGGACAGTAGCGATGAAAATAACTCAAATGTCGATAATGA
TAATCCATCCATTCGGTATGTCTCAAAACATACGGCGCTAAACTCATCAA
TCCAACCACACCAGAACCATAAAATACAAAACGAATAACTCGGTTTTGTG
GTAAGTAAGAATTTAATGTTGAaaagaattctgaaattgattccAAGAAT
TCACCGAAATCTTCTATGCTAAACGCCTTCACCACGCCTGAAAAGGCGCC
CAAAACTTCGAAAAACATTGTCAATTCGtggctttttcaatttttttttg
tttcttgatTTTCATGTCCATTTTTTCTGAGGAATAAATAAAGGTGATAT
TAGAATGAATCCTTATAGAAGCAAGGTGCTTGTCTTGGAAGCTTTAAGAA
TAGGAGCTTATCAAGTTCatttt

Coding sequence (CDS) from alignment at scaffold_297:21220..22842

>TCONS_00057706 ID=TCONS_00057706|Name=TCONS_00057706|organism=Clytia hemisphaerica|type=CDS|length=891bp|location=Sequence derived from alignment at scaffold_297:21220..22842 (Clytia hemisphaerica)
TTATTTGATAGCATATCCATAGATGTGAGGTGCTAATACCTGTAAAGGTC
TCGTTGCAATCTCCTCAGTATCCAAACAAAATTGATCAATCTTTAAAAAC
GAGAAATTCGCTCTCCTCAAAAATTTCTCAACATCACGCCTCACGTGGCA
TCTAACCAGCGCGAAAACAAATACAAATCTCAGTTGATTGAAATAAGCCC
ATGAGAAGAAATTCGTTTCTTGCGCATGCTCAATGAAGTATATCCGTCCA
CCAGGCATCAAGACACGTTTAAATTCTTCAAAACAATGATCTAAGTTCAT
CGGATAACACAAGGAGTGAACAGACACGATAGCACTTATTGTTCCATCAG
GAACACCAATCAATTGTTCCGGATGTGAACAAATAAAACGTTCTAAATTC
ACGTTTTTCATTAATCTCTCATCTTCATCGTCAGGAAAATTCAAACTCAT
TTGATCCTTATATTTTTCATCGTGGTCGACAGCTATAAGTCTTGTATTCT
CTGGATAATATAATAAGTTTGACCCACCTCCAGCTTGGATCTCCACCACC
AAGAATTTATCCTTGTATTTTGGTAACTCGTCATAGCTTTGAATCATGTT
ATCAAATATCAAGCGTTTTTGTTCGTCGATAAGTGGACAGTAGCGATGAA
AATAACTCAAATGTCGATAATGATAATCCATCCATTCGGTATGTCTCAAA
ACATACGGCGCTAAACTCATCAATCCAACCACACCAGAACCATAAAATAC
AAAACGAATAACTCGGTTTTGTGGTAAGTAAGAATTTAATGTTGAaaaga
attctgaaattgattccAAGAATTCACCGAAATCTTCTATGCTAAACGCC
TTCACCACGCCTGAAAAGGCGCCCAAAACTTCGAAAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036387XLOC_036387Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057706-proteinTCONS_00057706-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057706-exon-scaffold_297-1491911889:21220..22842TCONS_00057706-exon-scaffold_297-1491911889:21220..22842Clytia hemisphaericaexon
TCONS_00057706-exon-scaffold_297-1510915933:21220..22842TCONS_00057706-exon-scaffold_297-1510915933:21220..22842Clytia hemisphaericaexon
TCONS_00057706-exon-scaffold_297-1575043694:21220..22842TCONS_00057706-exon-scaffold_297-1575043694:21220..22842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:21220..22842 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.9681	11.7197	3.83516	3.66872	13.805	10.6415	10.1611	10.0261	6.62176	6.5473	4.24512	4.51171	4.73905	4.26303	5.69885	6.06987	9.945	7.29748	3.70735	5.83317	7.01078	6.14111	11.1045	10.2525	6.27664	7.6934	4.57571	2.46002	7.65829	8.25655
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013216Methyltransf_11
IPR029063SAM-dependent_MTases
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0008168 methyltransferase activity
Blast
[Close]
BLAST of TCONS_00057706 vs. Swiss-Prot (Human)
Match: MET7A (Methyltransferase-like protein 7A OS=Homo sapiens GN=METTL7A PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.062e-21
Identity = 62/212 (29.25%), Postives = 104/212 (49.06%), Query Frame = 3 
Query:  417 IDEQKRLIFDNMIQSYDELPKYKDKFLVVEIQAGGGSNLLYYPENTRLIAVDHDEKYKDQMSLNFPDDEDERLMKNVNLERFICSHPEQLIGVPDGTISAIVSVHSLCYPMNLDHCFEEFKRVLMPGGRIYFIEH-AQETNFFSWAYFNQLRFVFVFALV--RCHVRRDVEKFLRRANFSFLKIDQFCLDTEEIATRPLQVLAPHIYGYAIK 1043
            +  +KR +F N+     E      K  ++E+  G G+N  +YP   R+  +D +  ++  +  +  ++      +++  ERF+ +  E +  V DG++  +V    LC   N +    E  RVL PGG  YF+EH A E +  +W YF Q      + L+   C++ R+  K L RA+FS LK+          A    +++ PHIYGYA+K
Sbjct:   51 MASKKRELFSNL----QEFAGPSGKLSLLEVGCGTGANFKFYPPGCRVTCIDPNPNFEKFLIKSIAEN------RHLQFERFVVAAGENMHQVADGSVDVVVCTLVLCSVKNQERILREVCRVLRPGGAFYFMEHVAAECS--TWNYFWQQVLDPAWHLLFDGCNLTRESWKALERASFSKLKLQHI------QAPLSWELVRPHIYGYAVK 244
The following BLAST results are available for this feature:
BLAST of TCONS_00057706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MET7A2.062e-2129.25Methyltransferase-like protein 7A OS=Homo sapiens ... [more]
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