TCONS_00005711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005711
Unique NameTCONS_00005711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005711 ID=TCONS_00005711|Name=TCONS_00005711|organism=Clytia hemisphaerica|type=transcript|length=348bp
AATCGATGTTGACGTGGAGTTTggcgcaaaattttaaggattggcGCGCA
TCACGTGAAAGTGATGATTTGGAATTTCTGGACTATTTTGGTATTTCAGA
GCCCTTTCTAAAGTATACAAAGTAGTACTTTATTCCATTTTAGTCAAACA
cagaaagaattttgtaaaacggttGATTTATTACAGAAAAATAGAGATAT
ATATCTCACTTCTGACTTTACggaccattttctcaaaataggttTCAGGG
GGTTTTCGCACACCTTGGCAACGTTTTTTCAGGATTGGAAAGAGCTCTat
gatcatgaaattttcaggagttgCTCCGTTTATGGTTTGCTATGGAAT
Run BLAST on NCBI

transcript from alignment at sc0000054:751199..751546

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005711 ID=TCONS_00005711|Name=TCONS_00005711|organism=Clytia hemisphaerica|type=transcript|length=348bp|location=Sequence derived from alignment at sc0000054:751199..751546 (Clytia hemisphaerica)
ATTCCATAGCAAACCATAAACGGAGcaactcctgaaaatttcatgatcat
AGAGCTCTTTCCAATCCTGAAAAAACGTTGCCAAGGTGTGCGAAAACCCC
CTGAaacctattttgagaaaatggtccGTAAAGTCAGAAGTGAGATATAT
ATCTCTATTTTTCTGTAATAAATCaaccgttttacaaaattctttctgTG
TTTGACTAAAATGGAATAAAGTACTACTTTGTATACTTTAGAAAGGGCTC
TGAAATACCAAAATAGTCCAGAAATTCCAAATCATCACTTTCACGTGATG
CGCgccaatccttaaaattttgcgccAAACTCCACGTCAACATCGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003236XLOC_003236Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005711-exon-sc0000054-1491911889:751199..751546TCONS_00005711-exon-sc0000054-1491911889:751199..751546Clytia hemisphaericaexon
TCONS_00005711-exon-sc0000054-1510915933:751199..751546TCONS_00005711-exon-sc0000054-1510915933:751199..751546Clytia hemisphaericaexon
TCONS_00005711-exon-sc0000054-1575043694:751199..751546TCONS_00005711-exon-sc0000054-1575043694:751199..751546Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:751199..751546 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.08333	0	0.648691	0.999205	0	1.06845	1.99811	0.246926	0.292036	0	0.947695	0.207546	1.02531	0.403081	0.691088	0.230537	1.0064	0.573578	2.18481	3.26988	6.39268	0.838485	1.55281	0.402151	0	6.50078	5.04488	4.83605	4.72455
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top