TCONS_00057692 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057692
Unique NameTCONS_00057692
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057692 ID=TCONS_00057692|Name=TCONS_00057692|organism=Clytia hemisphaerica|type=transcript|length=408bp
GCAGTACTGTATTGCCCACATAAAATCGTTGTTTAACCTTTGCAATATTT
CTTTGAGAGATCCTGTTGCTGTCTAAAAACATACATTTCTTTTCCACAGA
CTCGCTTTGAAAGAGACACCGAGAAAATGTTAAATGAAATCAAATTGAAA
CGTGGTGAAAAAGGAGATTTGGGCATACCAGGAGTACGAGGAAAGCAAGG
TTTTGATGGTGTCAAAGGAGCAAAGGGTGAAATGGGAGTTGGACTGAAAG
GTGAAAAAGGCAAGGGTATTAATTTGTCGGACGTTGTCAATGAAGTTGTT
CGAGATACCGAAGAAAGTGAGTCCTTTTCACAAGAAATTCCACCTGTAAT
ATAAGTTAATTCACTGCATTTACCTAATCTCATTCCTtggcaatagacct
tatcggag
Run BLAST on NCBI

transcript from alignment at scaffold_297:127386..128561-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057692 ID=TCONS_00057692|Name=TCONS_00057692|organism=Clytia hemisphaerica|type=transcript|length=1176bp|location=Sequence derived from alignment at scaffold_297:127386..128561- (Clytia hemisphaerica)
GCAGTACTGTATTGCCCACATAAAATCGTTGTTTAACCTTTGCAATATTT
CTTTGAGAGATCCTGTTGCTGTCTAAAAACATACATTTCTTTTCCACAGA
CTCGCTTTGAAAGAGACACCGAGAAAATGTTAAATGAAATCAAATTGAAA
CGTGGTGAAAAAGGAGATTTGGTAAGAAACGATTTATTCAAGGAAAGTTT
TTTCTCATATTTTCATAGGTCATATCACGGTCGAAAGGAATTATGGGTAA
TCAGGACTACCGTGCTCTGATAACGAATTTTTGTTAGTTTAAAGTTTTGG
AAGTTGTCGCATTTACCAACGGGAAGCCGTTTTGACTTCGCGATCAGTCC
TGATTAACCATGATTCATTAGGACCGTGAAATGGCATATTGGATCAGTAA
ATGCAAGTTATAAACGTAAAAGATATAATGTTTTACTTTCATCGTAGAAT
CGTCACTTCGTACTCTGAAGACATTGGGCTTCTATTACTTACACAACATT
TTTCATTTTTCCTTCCATCAAAACATTTATTTCTTACCACGTTACAGGGC
ATACCAGGAGTACGAGGAAAGCAAGGTTTTGATGGTGTCAAAGGAGCAAA
GGTAATACCACTCATTCAACTTAAGCGAAAGCTATCTGATAACACCCTCG
GATTAAATAACAATATTTATGTCTTATAATTTGCTGTGTAGCTCTATTTT
AAATCAAAATCAATGATAGTCCCACTTTCATTCTGATACCCACCAATTAG
AGAGTCTAGCCTGACTCGTTTCTTTTTACCTTACAGGGTGAAATGGGAGT
TGGACTGAAAGGTGAAAAAGGCAAGGGTATTAATGTAAGTGCAATACCAA
TAAAAACTTTCATGTCAAGTTGAATTGTTATTGCGTAGTTCGGTCTGGAC
CACGGTTTATCGGATGGCTTGATCAAACCGATATTTTAGACACAAACCAC
CTGGCCTCTCCTCAAGATTCCTAAAGATTCAACAATTGTACAAATCCACG
ATTATTTTTTTCGAATCAAAAATATTATATCTTTATTTCAGTTGTCGGAC
GTTGTCAATGAAGTTGTTCGAGATACCGAAGAAAGTGAGTCCTTTTCACA
AGAAATTCCACCTGTAATATAAGTTAATTCACTGCATTTACCTAATCTCA
TTCCTTGGCAATAGACCTTATCGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036376XLOC_036376Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057692-exon-scaffold_297-1575043694:128391..128561TCONS_00057692-exon-scaffold_297-1575043694:128391..128561Clytia hemisphaericaexon
TCONS_00057692-exon-scaffold_297-1575043694:127961..128014TCONS_00057692-exon-scaffold_297-1575043694:127961..128014Clytia hemisphaericaexon
TCONS_00057692-exon-scaffold_297-1575043694:127728..127775TCONS_00057692-exon-scaffold_297-1575043694:127728..127775Clytia hemisphaericaexon
TCONS_00057692-exon-scaffold_297-1575043694:127386..127520TCONS_00057692-exon-scaffold_297-1575043694:127386..127520Clytia hemisphaericaexon
TCONS_00057692-exon-scaffold_297-1510915933:128391..128561TCONS_00057692-exon-scaffold_297-1510915933:128391..128561Clytia hemisphaericaexon
TCONS_00057692-exon-scaffold_297-1510915933:127961..128014TCONS_00057692-exon-scaffold_297-1510915933:127961..128014Clytia hemisphaericaexon
TCONS_00057692-exon-scaffold_297-1510915933:127728..127775TCONS_00057692-exon-scaffold_297-1510915933:127728..127775Clytia hemisphaericaexon
TCONS_00057692-exon-scaffold_297-1510915933:127386..127520TCONS_00057692-exon-scaffold_297-1510915933:127386..127520Clytia hemisphaericaexon
TCONS_00057692-exon-scaffold_297-1491911889:128391..128561TCONS_00057692-exon-scaffold_297-1491911889:128391..128561Clytia hemisphaericaexon
TCONS_00057692-exon-scaffold_297-1491911889:127961..128014TCONS_00057692-exon-scaffold_297-1491911889:127961..128014Clytia hemisphaericaexon
TCONS_00057692-exon-scaffold_297-1491911889:127728..127775TCONS_00057692-exon-scaffold_297-1491911889:127728..127775Clytia hemisphaericaexon
TCONS_00057692-exon-scaffold_297-1491911889:127386..127520TCONS_00057692-exon-scaffold_297-1491911889:127386..127520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:127386..128561 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.92216	2.78162	1.81672	1.3824	24.7633	20.5182	90.7661	97.4198	16.075	27.541	11.7404	2.96834	16.1253	10.4664	4.5555	3.47644	14.4541	17.97	22.3629	17.8483	25.6833	19.9262	10.8339	10.5929	42.6848	37.0701	71.1371	78.5284	14.0493	17.9429
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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