TCONS_00058382 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058382
Unique NameTCONS_00058382
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length982

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058382 ID=TCONS_00058382|Name=TCONS_00058382|organism=Clytia hemisphaerica|type=transcript|length=982bp
GAAAAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCAGATCAACA
TAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATG
AAATGGACATTCTCCATAAGGCTCCGGTCACTCAACAAGATGATGATTTG
GAGAGTGGATTTGATGATACAGCAGcTTCTATTGCACGCCCTATTAGGAA
AGCCAAGATGAGAAATTCCAAAGAGTCGACTGACTCGGTCACAACCAGGG
AACCAGGAATTCGAAAACGTGGCAAAGAAAATACGAAGGCGAAAAAAACA
TCAGCCTCAAacAACAATTCAATGAAACGCAAaagaaaagaggaaaagaa
agagACTATTATGTGTACGGGATGTGGAGAAAAGTACGACGAAAAAACTG
ATGATAATAGGTGGGTGCAATGTGATGCATGCGAACAGTGGTGTCATCTC
CAGTGTTCCGGCATAAAATATCGGACGTCAAAATATGACACTATTAATCT
TGAAAATATACCGTTTAAGTGTAGAACGTCGTGTTTAAAGTAAAGATTGA
ACAATAAAAAGTGTCTGTATTTTTACTCAACGTAACTACAGTAATCGTAT
TTTTATATGGTCGAGCTCTCTTTTGCGAATTGGGATAAATGTTTTACGAA
GACAATAACAATGGAAATAGGTCTTGAATTCCCAAGtcaattgaatgaaa
acaaaaacaaaatttgtcaAAGTCTTTCTTGAAGGGAAATCCGGACTTTT
TTGCACGTCCTATGTAATAGGCTAATCGCAATAAACAATTTAACCCCCAT
GTTGAGGAAGTCACTTTTGGAAAATATTCATCCATAGTCCTTATAAAAAC
CCTGGTCCGgaagcttatttttcaaatattttgttagctttttcctttgt
tgccatcaaaagataaaaatcaatttgctcAATTTTGGATCACGTTACCG
agtactcctcttgggattggtttgagcaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_31:443..3520+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058382 ID=TCONS_00058382|Name=TCONS_00058382|organism=Clytia hemisphaerica|type=transcript|length=3078bp|location=Sequence derived from alignment at scaffold_31:443..3520+ (Clytia hemisphaerica)
GAAAAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTGagaa
aatctttacaaatagaaattATCGTTATTTTTCTACGGTTCTCTTTTTcc
attgttatttttcattcacTTTGAAGTTTATtgattatattatttttatc
tACTTAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATA
TGACAGAAATGATGAAATGGACATTCTCCATAAGGCTCCGGTCACTCAAC
AAGATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTgagaaaatc
ttttacaaataGAAATTATCGTTATTTTTCTACGGTTCTCTTTTTccatt
gttatttttcattcacTTTGAAGTTTATTGATTATATTATTCTTATCTAC
TTAGATCAACATAAGAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGA
CAGAAATGTTGAAATGGACATTCTCCATAAGGCTCCGGTCACTCAACAAG
ATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTgagaaaatcttt
tacaaataGAAATTATCGTTATTTTTCTACGGTTCTCTTTTTccattgtt
atttttcattcacTTTGAAGTTTATtgattatattatttttatctACTTA
GATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAG
AAATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTGAAAAAG
ATGATGATTTGGAGAGTGGATTTGATGATACAGCAggtgagaaaaatttg
aaaacaacaatTCTCCCGAGTAACAAACGTGTTGACTATAAATGGATAAA
CTTGAATTTcttgggtcatttattaaatttggttcattggatcaaaagtt
atcctaatttgaaaaaaaagttacttCAGGAAAGTactcaaaaacgttga
aaatcgacctatcaaatttttattctgaaattttcagtagcgACAGCTTT
TGCACGAATAAGAGCATTACGTAGTAATTtagaaacataatttttttcaa
acttgagcctagaaagggtttaaaatcttcatcaaaatcatttccaTTTG
TAAAAGGATTAAACTTTTTAGATCTCTTTTTAGAATATTCACctgaaaga
gagaaacttttttgtggcgcaccagGTATATAATATCACTATATTGAAAA
cgatttcattttctttcagcTTCTATTGCACGCCCTATTAGGAAAGCCAA
GATGAGAAATTCCAAAGAGTCGACTGACTCGGTCACAACCAGTAAGCTTT
TTTTTCATCCTATCAGATTCATGTCCCGTTTCAAgctatttttcttttcg
catctTGAACTTTCAAAATGTTGTCAATTATGAATACTAACTATCAGAAT
TTTCCTTTGAATGTAACAAAATGAATCCTTATTATTGTTattcttgtttt
tattattattgtatTCAAAGATTCTATTGTATTACTTATCTTCGTTAGCC
GAATTGAGAAACCAGCCCATAGCAAACCCAAACCTCTGATAAGTTTTACA
TCTCTTTCAGGGGAACCAGGAATTCGAAAACGTGGCAAAGAAAATACGAA
GGCGAAAAAAACATCAGCCTCAAGTATGGTTATTTTCCCGTTATAAATGT
CCAGGGCCTAAAGTTACTCTTGAAATTGCCTTTTTGATTAACATAATTTT
ATATCTTAAACTACAGGTacatgaaattttattttcaaaactttttagat
ATAATCCCTATTTCTTTTCCAATTGAGTTTGCCTCTCATTTTGTATGCCA
TTTTGAGTGGTACAATATCGAATCTTTTGTATATATGACAGTCAAATCTA
GTATGGGAGTATTCCTCTGGCTCTGGGTCATTTATTATCACAATTGtaat
tctcttttattttagacAACAATTCAATGAAACGCAAaagaaaagaggaa
aagaaagagACTATTATGTGTACGGGATGTGGAGAAAAGTACGACGAAAA
AACTGATGATAATAGGTATGAAGAGTCGTTATGTTCGATTTTTTAGATCA
AAAGCACTTCCTTTTTAAAGATTATACAAGGAAGACCTTTCTTGGAATTA
AAGCATACCGTTTTCTTGTGAAAATTTAGAAAGAAGATATTATAGAGAAT
GACTGGTAGCAGTAGTTTAACCTACTTTAAACACCATCAGTTTTTGCTTC
TCAATCTCAATTACTctaataatttaattttgaattttgcaaaaaatttt
caCCCAATACATTTTTATTCCGAAcccctgcttgttaatttttggaaaat
tttatttgaaagttatTTTCCTTGCCCTAGTTATTCTGTATTAACCTGCT
TTTCTAAAATTCTCTCTGTAATACCTACTCCTGCGAAAGGAGAGGGGATC
CAGAGGCTTCATATATAATATCTATATCTAGTATCCACTGGTATTCGAAG
ATATTTCGAATGTCTGTTTTTCATGTTTGTTCGATGTCTTATCATATTTA
TTATAGGTGGGTGCAATGTGATGCATGCGAACAGTGGTGTCATCTCCAGT
GTTCCGGCATAAAATATCGGACGTCAAAATATGACACTATTAATCTTGAA
AATATACCGTTTAAGTGTAGAACGTCGTGTTTAAAGTAAAGATTGAACAA
TAAAAAGTGTCTGTATTTTTACTCAACGTAACTACAGTAATCGTATTTTT
ATATGGTCGAGCTCTCTTTTGCGAATTGGGATAAATGTTTTACGAAGACA
ATAACAATGGAAATAGGTCTTGAATTCCCAAGtcaattgaatgaaaacaa
aaacaaaatttgtcaAAGTCTTTCTTGAAGGGAAATCCGGACTTTTTTGC
ACGTCCTATGTAATAGGCTAATCGCAATAAACAATTTAACCCCCATGTTG
AGGAAGTCACTTTTGGAAAATATTCATCCATAGTCCTTATAAAAACCCTG
GTCCGgaagcttatttttcaaatattttgttagctttttcctttgttgcc
atcaaaagataaaaatcaatttgctcAATTTTGGATCACGTTACCGagta
ctcctcttgggattggtttgagcaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036772XLOC_036772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058382-exon-scaffold_31-1491911889:443..485TCONS_00058382-exon-scaffold_31-1491911889:443..485Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1510915933:443..485TCONS_00058382-exon-scaffold_31-1510915933:443..485Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1575043694:443..485TCONS_00058382-exon-scaffold_31-1575043694:443..485Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1491911889:600..731TCONS_00058382-exon-scaffold_31-1491911889:600..731Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1510915933:600..731TCONS_00058382-exon-scaffold_31-1510915933:600..731Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1575043694:600..731TCONS_00058382-exon-scaffold_31-1575043694:600..731Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1491911889:1662..1733TCONS_00058382-exon-scaffold_31-1491911889:1662..1733Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1510915933:1662..1733TCONS_00058382-exon-scaffold_31-1510915933:1662..1733Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1575043694:1662..1733TCONS_00058382-exon-scaffold_31-1575043694:1662..1733Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1491911889:2003..2065TCONS_00058382-exon-scaffold_31-1491911889:2003..2065Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1510915933:2003..2065TCONS_00058382-exon-scaffold_31-1510915933:2003..2065Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1575043694:2003..2065TCONS_00058382-exon-scaffold_31-1575043694:2003..2065Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1491911889:2358..2457TCONS_00058382-exon-scaffold_31-1491911889:2358..2457Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1510915933:2358..2457TCONS_00058382-exon-scaffold_31-1510915933:2358..2457Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1575043694:2358..2457TCONS_00058382-exon-scaffold_31-1575043694:2358..2457Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1491911889:2949..3520TCONS_00058382-exon-scaffold_31-1491911889:2949..3520Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1510915933:2949..3520TCONS_00058382-exon-scaffold_31-1510915933:2949..3520Clytia hemisphaericaexon
TCONS_00058382-exon-scaffold_31-1575043694:2949..3520TCONS_00058382-exon-scaffold_31-1575043694:2949..3520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:443..3520 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40785e-08	0	0	0.167799	0	0	0	0	0.000121072	0	0	0	0	0	0	0	0.0220672	0	0	0.414144	0.211522	0	0.513066	0	0	0	0.460961	0	0.000905335	0.0891715
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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